ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11o18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104407.1| Zea mays PCO114073 mRNA sequence 72 4e-10
2ref|XM_464842.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-06
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
4dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
5dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
6dbj|AK070671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
7dbj|AK061300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
8gb|AY108995.1| Zea mays PCO109727 mRNA sequence 42 0.40
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
10gb|AC087284.22| Homo sapiens chromosome 15, clone RP11-617F23, c... 38 6.2
11dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
12dbj|AK120456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2
13dbj|AK059898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2 
>gb|AY104407.1| Zea mays PCO114073 mRNA sequence
          Length = 1726

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 54   atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
            ||||||||||| ||||| || || |||||||| ||  ||||||||||||  || ||||||
Sbjct: 1372 atcggttggtccgcgaaaggcccgtatagccagcctttggcgatatggcggtaggcagcc 1313

                               
Query: 114  tccgtcaagtgaatgccgt 132
            ||||||| |||||||||||
Sbjct: 1312 tccgtcaggtgaatgccgt 1294
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>ref|XM_464842.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1149

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 54   atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
            ||||||||||| ||||| || ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 1133 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 1074

                             
Query: 114  tccgtcaagtgaatgcc 130
            || |||| |||||||||
Sbjct: 1073 tctgtcaggtgaatgcc 1057
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                           
Query: 54      atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
               ||||||||||| ||||| || ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 8503788 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 8503729

                                
Query: 114     tccgtcaagtgaatgcc 130
               || |||| |||||||||
Sbjct: 8503728 tctgtcaggtgaatgcc 8503712
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0011N12
          Length = 158586

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                          
Query: 54     atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
              ||||||||||| ||||| || ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 156638 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 156579

                               
Query: 114    tccgtcaagtgaatgcc 130
              || |||| |||||||||
Sbjct: 156578 tctgtcaggtgaatgcc 156562
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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1113_G05
          Length = 131445

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                         
Query: 54    atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
             ||||||||||| ||||| || ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 53058 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 52999

                              
Query: 114   tccgtcaagtgaatgcc 130
             || |||| |||||||||
Sbjct: 52998 tctgtcaggtgaatgcc 52982
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>dbj|AK070671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056M20, full
            insert sequence
          Length = 3220

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 54   atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
            ||||||||||| ||||| || ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 2934 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 2875

                             
Query: 114  tccgtcaagtgaatgcc 130
            || |||| |||||||||
Sbjct: 2874 tctgtcaggtgaatgcc 2858
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>dbj|AK061300.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-E12, full
           insert sequence
          Length = 1100

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 54  atcggttggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcc 113
           ||||||||||| ||||| || ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 814 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 755

                            
Query: 114 tccgtcaagtgaatgcc 130
           || |||| |||||||||
Sbjct: 754 tctgtcaggtgaatgcc 738
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>gb|AY108995.1| Zea mays PCO109727 mRNA sequence
          Length = 847

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 61  ggtctgcgaangggccatatagccaacccctggcgatatggccataagcagcctccgtca 120
           |||| ||||| || || || ||||| ||||||||||| ||||| || || |||||||| |
Sbjct: 373 ggtcggcgaagggcccgtagagccagcccctggcgatgtggccgtaggcggcctccgtga 314

                       
Query: 121 agtgaatgccgt 132
            ||| |||||||
Sbjct: 313 ggtggatgccgt 302
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                   
Query: 93       gcgatatggccataagcagcctccgtcaagtgaat 127
                |||||||| ||||| || ||||| |||||||||||
Sbjct: 19491885 gcgatatgtccatatgcggcctctgtcaagtgaat 19491919
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>gb|AC087284.22| Homo sapiens chromosome 15, clone RP11-617F23, complete sequence
          Length = 183773

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   taagcagcctccgtcaagt 123
             |||||||||||||||||||
Sbjct: 67632 taagcagcctccgtcaagt 67614
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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0410C01
          Length = 138424

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                 
Query: 93     gcgatatggccataagcagcctccgtcaagtgaat 127
              |||||||| ||||| || ||||| |||||||||||
Sbjct: 110294 gcgatatgtccatatgcggcctctgtcaagtgaat 110328
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>dbj|AK120456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105I19, full
           insert sequence
          Length = 1263

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 93  gcgatatggccataagcagcctccgtcaagtgaat 127
           |||||||| ||||| || ||||| |||||||||||
Sbjct: 418 gcgatatgtccatatgcggcctctgtcaagtgaat 384
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>dbj|AK059898.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F09, full
            insert sequence
          Length = 1432

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 93   gcgatatggccataagcagcctccgtcaagtgaat 127
            |||||||| ||||| || ||||| |||||||||||
Sbjct: 1121 gcgatatgtccatatgcggcctctgtcaagtgaat 1087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 369,716
Number of Sequences: 3902068
Number of extensions: 369716
Number of successful extensions: 18409
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18380
Number of HSP's gapped (non-prelim): 29
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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