ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11o12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF486634.1| Triticum aestivum ferredoxin precursor, mRNA, complete cds Length = 800 Score = 289 bits (146), Expect = 3e-75 Identities = 180/193 (93%) Strand = Plus / Minus Query: 145 attagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaa 204 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct: 592 attagtagagttcctcctcttggtgggtttgaatgacgcaatctgccttggggtatgaga 533 Query: 205 tgcangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgact 264 |||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 532 tgcaggtcagaaggtacccctcgcccatctggttctcatcaaggaaggagccctccgact 473 Query: 265 gatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaag 324 |||||||||||||||| ||||||||||||||||| |||||||||||||||| || || | Sbjct: 472 gatcgacctccccggtagtcatcttgcccgcgcatgtggagcacgatccggcgcggcagg 413 Query: 325 agaatggcagctc 337 ||||||||||||| Sbjct: 412 agaatggcagctc 400 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 3 tcacaacttatatagcacgatctcatcaaaagac 36 |||||||| ||||| ||||||| ||||||||||| Sbjct: 717 tcacaactcatatatcacgatcccatcaaaagac 684
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 167 bits (84), Expect = 3e-38 Identities = 163/191 (85%) Strand = Plus / Plus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |||||| Sbjct: 114753 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 114812 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 114813 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 114872 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 || || || || | | |||||| ||||| || |||||||| ||||| | | || ||| Sbjct: 114873 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 114932 Query: 327 aatggcagctc 337 ||||||||||| Sbjct: 114933 aatggcagctc 114943
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 167 bits (84), Expect = 3e-38 Identities = 163/191 (85%) Strand = Plus / Plus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |||||| Sbjct: 153980 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 154039 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 154040 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 154099 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 || || || || | | |||||| ||||| || |||||||| ||||| | | || ||| Sbjct: 154100 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 154159 Query: 327 aatggcagctc 337 ||||||||||| Sbjct: 154160 aatggcagctc 154170
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 167 bits (84), Expect = 3e-38 Identities = 163/191 (85%) Strand = Plus / Plus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |||||| Sbjct: 21560897 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 21560956 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 21560957 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 21561016 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 || || || || | | |||||| ||||| || |||||||| ||||| | | || ||| Sbjct: 21561017 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 21561076 Query: 327 aatggcagctc 337 ||||||||||| Sbjct: 21561077 aatggcagctc 21561087
>dbj|AK103416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128I21, full insert sequence Length = 1337 Score = 167 bits (84), Expect = 3e-38 Identities = 163/191 (85%) Strand = Plus / Minus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |||||| Sbjct: 1046 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 987 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 986 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 927 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 || || || || | | |||||| ||||| || |||||||| ||||| | | || ||| Sbjct: 926 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 867 Query: 327 aatggcagctc 337 ||||||||||| Sbjct: 866 aatggcagctc 856
>dbj|D83660.1|RICRF Oryza sativa mRNA for root ferredoxin, partial cds Length = 603 Score = 167 bits (84), Expect = 3e-38 Identities = 163/191 (85%) Strand = Plus / Minus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |||||| Sbjct: 263 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 204 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 203 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 144 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 || || || || | | |||||| ||||| || |||||||| ||||| | | || ||| Sbjct: 143 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 84 Query: 327 aatggcagctc 337 ||||||||||| Sbjct: 83 aatggcagctc 73
>dbj|D30794.1|RICFERRA Oryza sativa (japonica cultivar-group) gene for ferredoxin, complete cds Length = 1829 Score = 167 bits (84), Expect = 3e-38 Identities = 163/191 (85%) Strand = Plus / Minus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |||||| Sbjct: 1573 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 1514 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 1513 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 1454 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 || || || || | | |||||| ||||| || |||||||| ||||| | | || ||| Sbjct: 1453 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 1394 Query: 327 aatggcagctc 337 ||||||||||| Sbjct: 1393 aatggcagctc 1383
>gb|AY107646.1| Zea mays PCO072676 mRNA sequence Length = 941 Score = 103 bits (52), Expect = 4e-19 Identities = 155/191 (81%) Strand = Plus / Minus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||| || |||||||| | ||||||||| |||||||| || ||||||||||| || ||| Sbjct: 623 tagtacaggtcctcctccttgtgggtgtggatgacgcagtctgccttggggtaggagatg 564 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || || || ||||| |||||| |||||||| | ||||||||||| ||||||||||| Sbjct: 563 caggtgaggaggtacccctcggccatctggccgtcgtcgaggaaggacccctccgactgg 504 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 |||||||| |||| | |||| | || ||||| |||||||| || |||| || || ||| Sbjct: 503 tcgacctcgccggccgacatcctcccggcgcaggtggagcaggacccggcgcggcaggag 444 Query: 327 aatggcagctc 337 || |||||||| Sbjct: 443 aagggcagctc 433
>dbj|AB001386.1| Maize DNA for Fd VI, complete cds Length = 2351 Score = 103 bits (52), Expect = 4e-19 Identities = 155/191 (81%) Strand = Plus / Minus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||| || |||||||| | ||||||||| |||||||| || ||||||||||| || ||| Sbjct: 2047 tagtacaggtcctcctccttgtgggtgtggatgacgcagtctgccttggggtaggagatg 1988 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || || || ||||| |||||| |||||||| | ||||||||||| ||||||||||| Sbjct: 1987 caggtgaggaggtacccctcggccatctggccgtcgtcgaggaaggacccctccgactgg 1928 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 |||||||| |||| | |||| | || ||||| |||||||| || |||| || || ||| Sbjct: 1927 tcgacctcgccggccgacatcctcccggcgcaggtggagcaggacccggcgcggcaggag 1868 Query: 327 aatggcagctc 337 || |||||||| Sbjct: 1867 aagggcagctc 1857
>dbj|AB001385.1| Maize mRNA for Fd VI, complete cds Length = 845 Score = 103 bits (52), Expect = 4e-19 Identities = 155/191 (81%) Strand = Plus / Minus Query: 147 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 206 ||||| || |||||||| | ||||||||| |||||||| || ||||||||||| || ||| Sbjct: 621 tagtacaggtcctcctccttgtgggtgtggatgacgcagtctgccttggggtaggagatg 562 Query: 207 cangtcagaaggtatccctcgcccatctggttctnatcgaggaaggagccctccgactga 266 || || || ||||| |||||| |||||||| | ||||||||||| ||||||||||| Sbjct: 561 caggtgaggaggtacccctcggccatctggccgtcgtcgaggaaggacccctccgactgg 502 Query: 267 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggngcnncaagag 326 |||||||| |||| | |||| | || ||||| |||||||| || |||| || || ||| Sbjct: 501 tcgacctcgccggccgacatcctcccggcgcaggtggagcaggacccggcgcggcaggag 442 Query: 327 aatggcagctc 337 || |||||||| Sbjct: 441 aagggcagctc 431
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 258 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccgg 315 |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| |||| Sbjct: 37235096 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccgg 37235039
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489B03 Length = 150381 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 258 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccgg 315 |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| |||| Sbjct: 109752 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccgg 109695
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0679C12 Length = 153666 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 258 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccgg 315 |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| |||| Sbjct: 72085 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccgg 72028
>dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G06, full insert sequence Length = 3419 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Plus Query: 258 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccgg 315 |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| |||| Sbjct: 499 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccgg 556
>dbj|AK069860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035H08, full insert sequence Length = 911 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 258 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccgg 315 |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| |||| Sbjct: 682 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccgg 625 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,758,365 Number of Sequences: 3902068 Number of extensions: 1758365 Number of successful extensions: 24756 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24710 Number of HSP's gapped (non-prelim): 37 length of query: 337 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 315 effective length of database: 17,147,199,772 effective search space: 5401367928180 effective search space used: 5401367928180 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
