ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd11o06 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 52.4 bits (124), Expect(2) = 7e-09 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Frame = -1 Query: 475 QPEKFGFYKQLPRACCGAPGSVAKAAYNFNVTAKCGEPGAT---------ACADPTTHWS 323 +PEK GF L CCG G YNF+VTA CG+ +CA P+ + Sbjct: 292 EPEKHGFEFPLI-TCCGYGGK-----YNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVN 345 Query: 322 WDGIHLTEAAYGHIARGWLYGPFADQPI 239 WDG H TEAA + G F+D P+ Sbjct: 346 WDGAHYTEAANEYFFDQISTGAFSDPPV 373 Score = 27.3 bits (59), Expect(2) = 7e-09 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -3 Query: 620 SGCIRQYNTFSWVHNAHLKKALEKLRPKYPNVRIIYGDYYT 498 +GC + YN + N LK+ + +LR P ++ D Y+ Sbjct: 244 AGCAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYS 284
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 31.6 bits (70), Expect(2) = 0.020 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 9/57 (15%) Frame = -1 Query: 436 ACCGAPGSVAKAAYNFNVTAKCGEPGATA---------CADPTTHWSWDGIHLTEAA 293 +CCG G YN+N CG C +P WDG+H T+AA Sbjct: 302 SCCGHGGK-----YNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAA 353 Score = 25.8 bits (55), Expect(2) = 0.020 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -3 Query: 617 GCIRQYNTFSWVHNAHLKKALEKLRPKYPNVRIIYGDYYT 498 GC+ N + N LK+A+ +LR I Y D Y+ Sbjct: 243 GCVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVDVYS 282
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 30.8 bits (68), Expect(2) = 0.055 Identities = 17/68 (25%), Positives = 33/68 (48%) Frame = -1 Query: 493 VVQFMLQPEKFGFYKQLPRACCGAPGSVAKAAYNFNVTAKCGEPGATACADPTTHWSWDG 314 + Q + P +GF ++ + CC G ++ A C + + C + +++ WDG Sbjct: 459 ISQMLETPAAYGF-EETKKPCCKT-GLLSAGAL-------CKKSTSKICPNTSSYLFWDG 509 Query: 313 IHLTEAAY 290 +H T+ AY Sbjct: 510 VHPTQRAY 517 Score = 25.0 bits (53), Expect(2) = 0.055 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -3 Query: 614 CIRQYNTFSWVHNAHLKKALEKLRPKYPNVRIIYGDYYT 498 C + N S + N+ L L +L PN +Y D YT Sbjct: 419 CNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYT 457
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 26.2 bits (56), Expect(2) = 0.69 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -3 Query: 614 CIRQYNTFSWVHNAHLKKALEKLRPKYPNVRIIYGDYYT 498 C N + + N+ L L +L PN I+YGD Y+ Sbjct: 336 CNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIVYGDIYS 374 Score = 25.8 bits (55), Expect(2) = 0.69 Identities = 15/61 (24%), Positives = 29/61 (47%) Frame = -1 Query: 472 PEKFGFYKQLPRACCGAPGSVAKAAYNFNVTAKCGEPGATACADPTTHWSWDGIHLTEAA 293 PE +GF +++ + CC G + C E ++ +++ WDG+H ++ A Sbjct: 383 PEDYGF-EEIKKPCCKI-GLTKGGVF-------CKERTLKNMSNASSYLFWDGLHPSQRA 433 Query: 292 Y 290 Y Sbjct: 434 Y 434
>UL34_EHV1V (P84406) Virion gene 26 protein| Length = 275 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/78 (34%), Positives = 37/78 (47%) Frame = -2 Query: 417 GPLPRRPTTSMSQPNAVSLVPLLVLIQRPTGAGTAFT*RRLLMAISPGVGYMALSQTNRL 238 G L RP +M Q + + +P++ L R G A +RLL + G M L Q R Sbjct: 136 GGLDLRPLQAMMQISCFTRMPVVQLSFRFMGPEDASRTQRLLERAT-SFGAMELHQ-KRT 193 Query: 237 FSPCERSASAVAPVERRE 184 C+RS V+P E RE Sbjct: 194 VDSCDRSNGIVSPREHRE 211
>UL34_EHV1B (P28954) Virion gene 26 protein| Length = 275 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/78 (34%), Positives = 37/78 (47%) Frame = -2 Query: 417 GPLPRRPTTSMSQPNAVSLVPLLVLIQRPTGAGTAFT*RRLLMAISPGVGYMALSQTNRL 238 G L RP +M Q + + +P++ L R G A +RLL + G M L Q R Sbjct: 136 GGLDLRPLQAMMQISCFTRMPVVQLSFRFMGPEDASRTQRLLERAT-SFGAMELHQ-KRT 193 Query: 237 FSPCERSASAVAPVERRE 184 C+RS V+P E RE Sbjct: 194 VDSCDRSNGIVSPREHRE 211
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -1 Query: 343 DPTTHWSWDGIHLTEAAYGHIARGW 269 D T SWDG+HL+E Y IA W Sbjct: 109 DRNTDISWDGLHLSEIGYTKIANIW 133
>YHYA_BPH44 (P15317) Hypothetical 65 kDa protein in hyaluronidase region| Length = 593 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 435 ALGNCL*NPNFSGWSMNWTTRCVVIAVDDPHIGVL 539 ALG C + N + WS N+ TR +IA + HI L Sbjct: 559 ALGRCWLHANNTAWSWNFDTRSAIIAEYNAHINNL 593
>DNAJ_MYCPN (P78004) Chaperone protein dnaJ| Length = 390 Score = 30.4 bits (67), Expect = 5.0 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 602 TDGCTRSVRLTRGLACRACSG 664 T+GCTR++ T+ + C AC G Sbjct: 150 TNGCTRTIEYTKRVTCSACDG 170
>TRPG_ASPAW (P18483) Anthranilate synthase component 2 (EC 4.1.3.27)| (Anthranilate synthase component II) [Includes: Glutamine amidotransferase; Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3 Length = 768 Score = 30.0 bits (66), Expect = 6.6 Identities = 18/66 (27%), Positives = 29/66 (43%) Frame = +2 Query: 176 VCYSRRSTGATAEAERSQGLNNRLVCERAI*PTPGDMAISSLRQVNAVPAPVGRWISTSS 355 +C +R A A E L ++ + P D+A+ + V ++P P G+ TS Sbjct: 536 ICGTRSEEAARAAIEAGADLIGIIMVQGRTRCVPDDVALRISQVVKSIPKPAGQTPPTSR 595 Query: 356 GTRLTA 373 GT A Sbjct: 596 GTPAAA 601
>WNT3A_XENLA (P31285) Protein Wnt-3a precursor (XWnt-3a)| Length = 352 Score = 30.0 bits (66), Expect = 6.6 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%) Frame = -1 Query: 415 SVAKAAYNFNVTAKCGEPGATACADPTTH-------WSWDG 314 ++A A F VT C E AT C T H W W G Sbjct: 114 AIASAGVAFAVTRSCAEGSATICGCDTHHKGPPGEGWKWGG 154
>PROA_PSEPK (Q88DL4) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 423 Score = 29.6 bits (65), Expect = 8.6 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +2 Query: 215 AERSQGLNNRLVCERAI*PTPGDMAISSLRQVNAVPAPVG 334 A R+ GL L+ A+ P D I+ LRQV ++P PVG Sbjct: 59 AGRASGLEPALLDRLALTPARIDGMITGLRQVASLPDPVG 98
>PHT1_PSEPU (Q05181) Phthalate transporter| Length = 451 Score = 29.6 bits (65), Expect = 8.6 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +2 Query: 278 GDMAISSLRQVNAVPAPVG-RWISTSSGTRLTAFGCDIEVVGRLGNGPRSPTACPRQLLV 454 G AISSL Q+ A AP+G WI+T +G+ A G I L G A P L Sbjct: 387 GISAISSLGQIGAFCAPIGLGWINTVTGS--LAIGLTIIGALVLAGGMAVLIAVPANALS 444 Query: 455 ESKL 466 E L Sbjct: 445 EKPL 448 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,295,772 Number of Sequences: 219361 Number of extensions: 2200090 Number of successful extensions: 5852 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5851 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
