ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11o04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YD72_SCHPO (Q10327) Hypothetical protein C32A11.02c in chromosome I 34 0.45
2YCFI_YEAST (P39109) Metal resistance protein YCF1 (Yeast cadmium... 31 2.9
3EZRA_STAES (Q8CNW5) Septation ring formation regulator ezrA 31 3.8
4EZRA_STAEQ (Q5HNI8) Septation ring formation regulator ezrA 31 3.8
5Y4628_STRCO (Q04296) Putative HTH-type transcriptional regulator... 30 5.0
6ALBG2_BACSU (Q8RKH1) Antilisterial bacteriocin subtilosin biosyn... 30 6.6

>YD72_SCHPO (Q10327) Hypothetical protein C32A11.02c in chromosome I|
          Length = 851

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -1

Query: 575 EHPVDEAINRAESLLEKLKSFAGEMKVRSSHALERVMQYVRSLISSL 435
           +HPV   +N  +  ++KL   +G +   ++   +R MQY++ L+ ++
Sbjct: 247 QHPVRSLLNLIDKFIDKLSEQSGNVTADTNEHYDRAMQYLKQLVENI 293



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>YCFI_YEAST (P39109) Metal resistance protein YCF1 (Yeast cadmium factor 1)|
          Length = 1515

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 54  YVASSLL-LHYIHSFIYNNTQNVMYSTTSHDAKCSTSCHKIYSSVSCLFGWL*IVWSQIH 230
           Y+ S+L  L Y  S + +N  + + ST       S    K+      L  WL ++WS   
Sbjct: 376 YIKSALTALIYQKSLVLSNEASGLSSTGDIVNLMSVDVQKLQD----LTQWLNLIWS--- 428

Query: 231 KA*KAPYQQLVCLESVHKLL 290
                P+Q ++CL S++KLL
Sbjct: 429 ----GPFQIIICLYSLYKLL 444



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>EZRA_STAES (Q8CNW5) Septation ring formation regulator ezrA|
          Length = 564

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 569 PVDEAINRAESLLEKLKSFAGEMKVRSSHAL 477
           PV+E I  AE LLEK K  A + ++  +H L
Sbjct: 83  PVEEKIQNAEELLEKFKFTAAQTEIDDAHEL 113



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>EZRA_STAEQ (Q5HNI8) Septation ring formation regulator ezrA|
          Length = 564

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 569 PVDEAINRAESLLEKLKSFAGEMKVRSSHAL 477
           PV+E I  AE LLEK K  A + ++  +H L
Sbjct: 83  PVEEKIQNAEELLEKFKFTAAQTEIDDAHEL 113



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>Y4628_STRCO (Q04296) Putative HTH-type transcriptional regulator SCO4628|
          Length = 269

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = -3

Query: 480 PGESNAVCEVLDLKPEG-GSGARVRRSWGCCSLKGKEAVIRSEGVGFKRRGQVEE-GSGG 307
           PGE   + ++ DL   G GS   V R++     +G  A+ R  G   +R+  ++  G G 
Sbjct: 26  PGEQ--LPQIRDLVEAGEGSKETVHRAYKALETEGLVAMSRGHGTVVRRKAPLKRLGIGR 83

Query: 306 LQR---RPGEVCAQIQDRLAAGR 247
             +   R G+  A I DR+A+GR
Sbjct: 84  YDKAKWRDGDEVAFIADRVASGR 106



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>ALBG2_BACSU (Q8RKH1) Antilisterial bacteriocin subtilosin biosynthesis protein|
           albG
          Length = 233

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +3

Query: 33  KIGLICCYVASSLL-----LHYIHSFIYNNTQNVMYSTTSHDAKCSTSCHKIYS 179
           ++GL+ C  A  +L     LHY+   + N T      T SH + C    H++ S
Sbjct: 44  RLGLLACIAAVLMLPAFLYLHYVTQSVKNMTAAFQKLTQSHQSCCDFQHHRLCS 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,790,598
Number of Sequences: 219361
Number of extensions: 1893585
Number of successful extensions: 4897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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