ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11o02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 228 bits (115), Expect = 9e-57 Identities = 171/190 (90%) Strand = Plus / Plus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 |||||||| || ||||||| || |||||||| || || ||||||||||||||||||||| Sbjct: 18758009 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 18758068 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 18758069 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 18758128 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct: 18758129 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 18758188 Query: 309 atatccttga 318 || ||||||| Sbjct: 18758189 atgtccttga 18758198
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 228 bits (115), Expect = 9e-57 Identities = 171/190 (90%) Strand = Plus / Plus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 |||||||| || ||||||| || |||||||| || || ||||||||||||||||||||| Sbjct: 107172 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 107231 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 107232 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 107291 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct: 107292 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 107351 Query: 309 atatccttga 318 || ||||||| Sbjct: 107352 atgtccttga 107361
>dbj|AK104588.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G07, full insert sequence Length = 1239 Score = 228 bits (115), Expect = 9e-57 Identities = 171/190 (90%) Strand = Plus / Minus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 |||||||| || ||||||| || |||||||| || || ||||||||||||||||||||| Sbjct: 1034 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 975 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 974 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 915 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct: 914 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 855 Query: 309 atatccttga 318 || ||||||| Sbjct: 854 atgtccttga 845
>dbj|AK104732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C08, full insert sequence Length = 1239 Score = 228 bits (115), Expect = 9e-57 Identities = 171/190 (90%) Strand = Plus / Minus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 |||||||| || ||||||| || |||||||| || || ||||||||||||||||||||| Sbjct: 1034 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 975 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 974 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 915 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct: 914 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 855 Query: 309 atatccttga 318 || ||||||| Sbjct: 854 atgtccttga 845
>dbj|AK101795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066B14, full insert sequence Length = 1692 Score = 228 bits (115), Expect = 9e-57 Identities = 171/190 (90%) Strand = Plus / Minus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 |||||||| || ||||||| || |||||||| || || ||||||||||||||||||||| Sbjct: 1481 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 1422 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 1421 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 1362 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct: 1361 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 1302 Query: 309 atatccttga 318 || ||||||| Sbjct: 1301 atgtccttga 1292
>dbj|AK071912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063J16, full insert sequence Length = 1487 Score = 228 bits (115), Expect = 9e-57 Identities = 171/190 (90%) Strand = Plus / Minus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 |||||||| || ||||||| || |||||||| || || ||||||||||||||||||||| Sbjct: 1365 tgtcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaa 1306 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 1305 tggcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtg 1246 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct: 1245 ttccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatg 1186 Query: 309 atatccttga 318 || ||||||| Sbjct: 1185 atgtccttga 1176
>ref|XM_472247.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1278 Score = 224 bits (113), Expect = 1e-55 Identities = 169/188 (89%) Strand = Plus / Minus Query: 131 tcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaatg 190 |||||| || ||||||| || |||||||| || || ||||||||||||||||||||||| Sbjct: 1278 tcatacagtgctgtttggaggcaggggaacaacaccatcgaagaaatccccaaagtaatg 1219 Query: 191 ccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtgtc 250 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 1218 gcgtggctcgtgcaccagcttggagattatgtccctcagcgtgatgaccccctcggtgtt 1159 Query: 251 ccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatgat 310 ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 1158 ccccttgtcatcgatcacgtagatcctgtggatcttctccgagtccagcttcagtatgat 1099 Query: 311 atccttga 318 ||||||| Sbjct: 1098 gtccttga 1091
>gb|AY105248.1| Zea mays PCO134665 mRNA sequence Length = 1817 Score = 190 bits (96), Expect = 2e-45 Identities = 167/191 (87%) Strand = Plus / Minus Query: 129 tgtcatacggtactgtttgcgggtaggggaacgacgccgtcgaagaaatccccaaagtaa 188 ||||||||||| |||||||| || |||||||| || || || |||||||||||||||||| Sbjct: 1530 tgtcatacggtgctgtttgcaggcaggggaacaacaccatcaaagaaatccccaaagtaa 1471 Query: 189 tgccgtggctcgtgcaccagcttggagattatgtccctcagtgtgatcaccccctcggtg 248 || |||||||| |||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 1470 tggcgtggctcatgcaccagcttggagattatgtccctcaaggtgatgactccctcggtg 1411 Query: 249 tcccccttgtcgtcgaccacgtanatcctgtggatcttggtcgagtccagcttcagtatg 308 | ||| ||||| || || ||||| |||||||||||||| |||||||||||||||||| Sbjct: 1410 ttccctttgtcatccacaacgtagatcctgtggatcttctcagagtccagcttcagtatg 1351 Query: 309 atatccttgat 319 || |||||||| Sbjct: 1350 atgtccttgat 1340
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 195 ggctcgtgcaccagcttggagattatgtc 223 ||||||| ||||||||||| ||||||||| Sbjct: 31118 ggctcgtacaccagcttggcgattatgtc 31146
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 195 ggctcgtgcaccagcttggagattatgtc 223 ||||||| ||||||||||| ||||||||| Sbjct: 40232166 ggctcgtacaccagcttggcgattatgtc 40232194
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 195 ggctcgtgcaccagcttggagattatgtc 223 ||||||| ||||||||||| ||||||||| Sbjct: 97944 ggctcgtacaccagcttggcgattatgtc 97972
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 195 ggctcgtgcaccagcttggagattatgtc 223 ||||||| ||||||||||| ||||||||| Sbjct: 23516 ggctcgtacaccagcttggcgattatgtc 23544
>dbj|AK105517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F06, full insert sequence Length = 1473 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 195 ggctcgtgcaccagcttggagattatgtc 223 ||||||| ||||||||||| ||||||||| Sbjct: 1255 ggctcgtacaccagcttggcgattatgtc 1227
>gb|AE014306.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 3 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aatgtacattttcttacaga 117 |||||||||||||||||||| Sbjct: 196414 aatgtacattttcttacaga 196395
>ref|XM_763655.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_155_30673_36963) partial mRNA Length = 6291 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cattttcttacagagtacagcgtt 127 ||||||||| |||||||||||||| Sbjct: 5448 cattttcttgcagagtacagcgtt 5471
>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a likely ortholog of mouse hepatoma-derived growth factor related protein 3 pseudogene (HDGFRP3), a novel protein similar to PAGE-5 protein (LOC203569), a novel protein similar to PAGE-5 protein (LOC139795), gene FLJ20434, a cytochrome c oxidase I (MTCO1) pseudogene, a G antigen, family D pseudogene and a CpG island, complete sequence Length = 130005 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ataatgtacattttcttaca 115 |||||||||||||||||||| Sbjct: 124731 ataatgtacattttcttaca 124712
>emb|AL445226.9| Human DNA sequence from clone RP11-261F2 on chromosome 13, complete sequence Length = 56239 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aatgtacattttcttacaga 117 |||||||||||||||||||| Sbjct: 53298 aatgtacattttcttacaga 53279
>emb|AL031286.2|HS681J21 Human DNA sequence from clone RP4-681J21 on chromosome 1q23.2-24.3 Contains the 5' end of a novel gene, the 5' end of the gene for expressed in hematopoietic cells (heart, liver) (HLL) and a CpG island, complete sequence Length = 68770 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 agataatgtacattttctta 113 |||||||||||||||||||| Sbjct: 18244 agataatgtacattttctta 18225
>gb|AY111046.1| Zea mays CL31773_1 mRNA sequence Length = 549 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 acgacgccgtcgaagaaatc 178 |||||||||||||||||||| Sbjct: 498 acgacgccgtcgaagaaatc 479
>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete sequence Length = 178812 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 atgtccctcagtgtgatcac 238 |||||||||||||||||||| Sbjct: 56361 atgtccctcagtgtgatcac 56380
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gtcccccttgtcgtcgacca 267 |||||||||||||||||||| Sbjct: 1956409 gtcccccttgtcgtcgacca 1956428 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,528,037 Number of Sequences: 3902068 Number of extensions: 2528037 Number of successful extensions: 45750 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45684 Number of HSP's gapped (non-prelim): 65 length of query: 349 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 327 effective length of database: 17,147,199,772 effective search space: 5607134325444 effective search space used: 5607134325444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
