ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11n20 |
|---|---|
| Clone Library Name | barley_pub |
>MPRF_STAAR (Q6GH45) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 32.0 bits (71), Expect = 0.39 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = -2 Query: 172 VAFSVLGFALSLPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 V + + +L LP +++ VRP + YV ++C LV+ L + V+Y C Sbjct: 165 VRWVLYAVSLFLPLFIIYSMVRPPDKNNRYVGLYCTLVSCVEWLAAAVVLYFC 217
>TYRP2_MOUSE (P29812) L-dopachrome tautomerase precursor (EC 5.3.3.12) (DT)| (DCT) (L-dopachrome delta-isomerase) (Tyrosinase-related protein 2) (TRP-2) (TRP2) (SLATY locus protein) Length = 517 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -1 Query: 191 ERSILLGCIFGFGVCLEFATAARPWTCPSVLTNR 90 E + + G + G G C E T RPW+ P +L N+ Sbjct: 47 EATNICGFLEGRGQCAEVQTDTRPWSGPYILRNQ 80
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +3 Query: 186 ALQ*FSFTTTAPLPTDQNLLCFLLSAWGISSLPPKCPSRG 305 A+ FS T+PLPT +L ++ W S + P + G Sbjct: 1792 AMMAFSAALTSPLPTSTTILLNIMGGWLASQIAPAAGATG 1831
>SPP1_SCHPO (O74508) Set1 complex component spp1 (Set1C component spp1)| (COMPASS component spp1) (Complex proteins associated with set1 protein spp1) Length = 424 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +2 Query: 161 RKCNLTEWSAPIIQFYNYCSTSHG 232 RKC L E S P NYCS HG Sbjct: 177 RKCRLRECSNPTRPNSNYCSDKHG 200
>Y1993_PSEAE (Q9I2B6) UPF0226 protein PA1993| Length = 402 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -2 Query: 220 GAVVVK-LNYWSAPFC*VAFSVLGFALSLPQL---LVHGRVRPF 101 G ++V+ L WS V LGFAL+ P+L LVHG PF Sbjct: 174 GVLLVQWLGLWSMGASIVLLGALGFALAWPKLPAPLVHGERLPF 217
>SPP1_YEAST (Q03012) COMPASS component SPP1 (Complex proteins associated with| SET1 protein SPP1) (Set1C component SPP1) (Suppressor of PRP protein 1) Length = 353 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 116 SMDEQLWQTQGKPQNRKCNLTEWSAPIIQFYNYCSTSHG 232 S+ + LW+ RKC +++ P +Q YCS HG Sbjct: 87 SLPKTLWK-------RKCRISDCYKPCLQDSKYCSEEHG 118
>MPRF_STAAW (Q8NWU7) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 LP +++ VRP + +V ++C LV+ L + V+Y C Sbjct: 176 LPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFC 217
>MPRF_STAAU (Q9AIV3) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 LP +++ VRP + +V ++C LV+ L + V+Y C Sbjct: 176 LPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFC 217
>MPRF_STAAS (Q6G9J9) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 LP +++ VRP + +V ++C LV+ L + V+Y C Sbjct: 176 LPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFC 217
>MPRF_STAAN (Q7A5R9) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 LP +++ VRP + +V ++C LV+ L + V+Y C Sbjct: 176 LPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFC 217
>MPRF_STAAM (Q99UB9) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 LP +++ VRP + +V ++C LV+ L + V+Y C Sbjct: 176 LPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFC 217
>MPRF_STAAC (Q5HG59) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYAC 14 LP +++ VRP + +V ++C LV+ L + V+Y C Sbjct: 176 LPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVVLYFC 217
>NING_BPH19 (O48427) Protein ninG| Length = 201 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = +2 Query: 149 KPQNRKCNLT-EWSAPIIQFYNYCSTSHGSK 238 KP RKC + EW P +CS HG+K Sbjct: 3 KPARRKCKICKEWFHPAFSNQWWCSPEHGTK 33
>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 198 FSFTTTAPLPTDQNLLCFLLSAWGISSLPPKCPSRG 305 FS T+PLPT +L ++ W S + P + G Sbjct: 1796 FSAALTSPLPTSTTILLNIMGGWLASQIAPPAGATG 1831
>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 198 FSFTTTAPLPTDQNLLCFLLSAWGISSLPPKCPSRG 305 FS T+PLPT +L ++ W S + P + G Sbjct: 1796 FSAALTSPLPTSTTILLNIMGGWLASQIAPPAGATG 1831
>MATK_ADEFA (Q8WJR5) Maturase K (Intron maturase)| Length = 504 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 96 QQILMLLYSVFSLTLELFFFGLLSFMPVFC 7 QQIL L++ S TL+ F+ G + ++ +FC Sbjct: 467 QQILSLIFPRASYTLKKFYRGRIWYLDIFC 496
>VID21_YEAST (Q06337) Chromatin modification-related protein VID21| (ESA1-associated factor 1) (Vacuolar import and degradation protein 21) Length = 982 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +1 Query: 31 KTEKEQL*R*REDRI*QHKYLLVRTDGHVHGRAAVANSRQTPKPKMQPNRMERSNNSVLQ 210 +T +EQ + ++ +I Q + L HV + Q P PK P++ SN S + Sbjct: 903 RTLREQQQQLKQHQIQQQRQQLQEESSHVQQLQQLQPGSQAPPPKSSPSQSSLSNISNIN 962 Query: 211 LLLHFPRIKT 240 PRIK+ Sbjct: 963 ---SAPRIKS 969
>MATK_PRULA (Q8WJP2) Maturase K (Intron maturase)| Length = 500 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 96 QQILMLLYSVFSLTLELFFFGLLSFMPVFC 7 +QIL L++ S TL+ F+ G + ++ +FC Sbjct: 463 EQILSLIFPRASYTLKKFYSGRIWYLDIFC 492
>ISPDF_TROWT (Q83MX3) IspD/ispF bifunctional enzyme [Includes:| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclod Length = 422 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -2 Query: 172 VAFSVLGFALSLPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVL 41 V + F+ + +LLVH R F P + Y+++ L +AV+ Sbjct: 88 VGLGIRYFSARITKLLVHDVARAFTPPEIYLSVIKQLETSKAVI 131
>ISPDF_TROW8 (Q83NK3) IspD/ispF bifunctional enzyme [Includes:| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclod Length = 422 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -2 Query: 172 VAFSVLGFALSLPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVL 41 V + F+ + +LLVH R F P + Y+++ L +AV+ Sbjct: 88 VGLGIRYFSARITKLLVHDVARAFTPPEIYLSVIKQLETSKAVI 131
>LCTP_STRIN (O33654) L-lactate permease| Length = 474 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 154 GFALSLPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFR 35 G A +LPQ+LV V LP+ ++FC+LV + V R Sbjct: 218 GLAFALPQILVSNYVGAELPS-IIGSLFCILVTILFVNLR 256
>PMPH_CHLTR (O84880) Probable outer membrane protein pmpH precursor| (Polymorphic membrane protein H) Length = 1016 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = -2 Query: 154 GFALSLPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYA 17 GFA S PQ+L PF D Y+ C VNV A S+I A Sbjct: 22 GFASS-PQVLTPNVTTPFKGDDVYLNGDCAFVNVYAGAENGSIISA 66
>MRP1_CHICK (Q5F364) Multidrug resistance-associated protein 1 (ATP-binding| cassette sub-family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter) Length = 1525 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -2 Query: 199 NYWSAPFC*VAFSVLGFALSLPQLLV-HGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVI 23 N + APF ++ +VLG + L L+ H R++ + + + + + V+FRS ++ Sbjct: 99 NIFRAPFFLISPTVLGITMLLATFLIQHERLKGVQSSGVMMIFWLISLLCATVIFRSKIM 158 Query: 22 YA 17 A Sbjct: 159 LA 160
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 154 GFALSLPQLLVHGRVRPFLP 95 GFALS PQL VH + +LP Sbjct: 2763 GFALSEPQLTVHQALESYLP 2782
>MATK_CRAMN (Q8WJQ9) Maturase K (Intron maturase)| Length = 506 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 96 QQILMLLYSVFSLTLELFFFGLLSFMPVFC 7 +QIL L++ S TL+ F+ G + ++ +FC Sbjct: 469 EQILSLIFPRASYTLKKFYRGRIWYLDIFC 498
>MPRF_STAHJ (Q4L667) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/48 (25%), Positives = 25/48 (52%) Frame = -2 Query: 148 ALSLPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIYACVLL 5 AL LP + + + P + Y+ ++C LV+ L ++V+Y ++ Sbjct: 173 ALFLPLFIAYTMINPIDRNNKYLGVYCTLVSSFEWLAAATVLYLSTVI 220
>HMDH_NICSY (Q01559) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 604 Score = 27.3 bits (59), Expect = 9.7 Identities = 28/100 (28%), Positives = 48/100 (48%) Frame = -2 Query: 319 PACPSPREGHFGGKELMPHAERRKHKRF*SVGSGAVVVKLNYWSAPFC*VAFSVLGFALS 140 PA P+ +E G K L PH ++++ + S A+ + L + F + FSV+ + LS Sbjct: 10 PAYPT-KEFAAGEKPLKPHKQQQEQDNSLLIASDALPLPLYLTNGLFFTMFFSVMYYLLS 68 Query: 139 LPQLLVHGRVRPFLPTDTYVAIFCLLVNVRAVLFRSSVIY 20 R + T +V F LV + +++ +SVIY Sbjct: 69 ------RWREKIRNSTPLHVVTFSELVAIASLI--ASVIY 100
>YBL2_SFV1 (P29170) BEL-2 protein| Length = 403 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 131 LWQTQGKPQNRKCNLTEWSAP 193 LWQ G P RKC +T++ P Sbjct: 92 LWQCLGDPSGRKCMVTQFLLP 112
>MATK_VAUCA (Q8WJN0) Maturase K (Intron maturase)| Length = 504 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 96 QQILMLLYSVFSLTLELFFFGLLSFMPVFC 7 +QIL L++ S TL+ F+ G + ++ +FC Sbjct: 467 EQILSLIFPRASYTLKKFYRGRIWYLDIFC 496
>ATC_PLAFK (Q08853) Calcium-transporting ATPase (EC 3.6.3.8) (Calcium pump)| Length = 1228 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 185 SILLGCIFGFGVCLEFATAARPWTCPSVLT 96 S L GC++ F + + A AA P P+V+T Sbjct: 294 SFLYGCLYYFKISVALAVAAIPEGLPAVIT 323 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,423,639 Number of Sequences: 219361 Number of extensions: 1051437 Number of successful extensions: 2876 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2874 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
