ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd11n19 |
|---|---|
| Clone Library Name | barley_pub |
>MMP9_RABIT (P41246) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 707 Score = 34.7 bits (78), Expect = 0.16 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -3 Query: 522 PSCRCPPPQ-TGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAP 355 P+ P PQ T + PT T RP PT SP G P G G P +PS AP Sbjct: 452 PATTTPEPQPTAPPTACPTWPATVRPSEHPTTSPTGAP---SAGPTGPPTASPSAAP 505
>SAHH2_MOUSE (Q80SW1) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (IP3R-binding protein released with inositol 1,4,5-trisphosphate) Length = 530 Score = 32.7 bits (73), Expect = 0.62 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +3 Query: 189 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 332 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>SAHH2_HUMAN (O43865) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (DC-expressed AHCY-like molecule) Length = 530 Score = 32.7 bits (73), Expect = 0.62 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +3 Query: 189 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 332 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>CBIJ_METTH (O27083) Probable cobalt-precorrin-6A reductase (EC 1.3.1.-)| Length = 302 Score = 32.3 bits (72), Expect = 0.81 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 14/81 (17%) Frame = +3 Query: 318 FLWRR-ALSPGIS*VRRKGSFR-----ACHVSLGP----RGTGRLTGSPWALVVAFRST- 464 +LWRR ++PG V+RKGS R + V G R RL+G PW V A +T Sbjct: 13 YLWRRKTMNPGDKGVKRKGSDRQREKMSVIVMAGTEDARRIISRLSGMPWVEVTATATTE 72 Query: 465 ---NLSEGMIGARFVVEDIDS 518 +L+E +R V +DS Sbjct: 73 HGSDLAEKSGASRTVTGALDS 93
>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid| salivary glycoprotein G1) (Proline-rich protein G1) Length = 309 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/51 (37%), Positives = 21/51 (41%) Frame = -3 Query: 507 PPPQTGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAP 355 PPP + P G +PLP P G P G P P G P P G P Sbjct: 260 PPPPRRPQGPPPPGGNPQQPLPPPAGKPQGPP---PPPQGGRPHRPPQGQP 307
>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 555 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = +3 Query: 45 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 224 R S S SK +R SSA SP + GPG +G S TNL + +AGLL Sbjct: 66 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLAGLL 125
>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive| element-binding protein) (SPRE-binding protein) (Nuclear factor SPBP) Length = 1983 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = -3 Query: 453 RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 277 +PLP+ TG P G P R P T PS A + R SSA + + PS Sbjct: 205 QPLPQTTGQPASGSSHLQPMQR--PSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPS 261
>K1949_MOUSE (Q8BQ30) Protein KIAA1949 homolog| Length = 594 Score = 30.8 bits (68), Expect = 2.4 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 515 VDVLHHKPGADHAFRQVCGPEGHYQSPRGAREAARASG----TQGHVACPKRPLPAHL*D 348 +D KP + + GP G +E A A Q ++ PLP Sbjct: 330 IDTQTQKPDPPASSEKHPGPSGMEAEEEAEKEEAEAQSRPLRAQQNLCSGPSPLPPE--H 387 Query: 347 AGREGSPPKEARQLRTIPPTPALL 276 +G EGS +E PPTPA L Sbjct: 388 SGTEGSRQQEEEAAEPRPPTPAPL 411
>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)| Length = 544 Score = 30.8 bits (68), Expect = 2.4 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = -3 Query: 504 PPQTGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSS 325 PPQT + PT T P PT +P P ++ +P T + P + SS Sbjct: 149 PPQTTSPTSKPTSTPTPTSTPTPTSTP-------TPTSQTIPPPTTTPKPTK------SS 195 Query: 324 KGSSSAEDHPTDARPSA 274 K + + PT RPS+ Sbjct: 196 KPTKTPVPTPTPTRPSS 212
>VPRA_DENPO (P25687) Intestinal toxin 1 (Mamba intestinal toxin 1) (MIT 1)| (MIT1) (Venom protein A) Length = 81 Score = 30.8 bits (68), Expect = 2.4 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +1 Query: 328 GEPSRPASHRCAGRGRFGHATCPWVPEARAASRAPR 435 GE PASH+ G+ H TCP P +P+ Sbjct: 38 GEDCHPASHKIPFSGQRMHHTCPCAPNLACVQTSPK 73
>IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (InsP 3-kinase C) (IP3K-C) Length = 683 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/56 (39%), Positives = 25/56 (44%) Frame = +2 Query: 284 RASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSG 451 R S+ + A LP AR + AP G G R PG QR GP G P G G Sbjct: 7 RGSLNEAEAGALPAA----ARMGLEAPRG---GRRRQPGQQRPGPGAGAPAGRPEG 55
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 730 Score = 30.4 bits (67), Expect = 3.1 Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Frame = -3 Query: 522 PSCRCPP-PQTGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRC 346 P CP P T + PT T P P PT SP PG G P P+ AP Sbjct: 466 PPTMCPTIPPTAYPTVGPTVGPTGAPSPGPTSSP-------SPGPTGAPSPGPTAAPTAG 518 Query: 345 RARGLSSKGSSSAEDHP 295 + +S S S D+P Sbjct: 519 SSE--ASTESLSPADNP 533
>RAD52_EMENI (Q96UP6) DNA repair and recombination protein radC (RAD52 homolog)| Length = 582 Score = 30.4 bits (67), Expect = 3.1 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -1 Query: 458 PEGHYQSPRGAREAARASGTQGHVACPKRP-LPAHL*DAGREGSPPKEARQLRTIPP 291 P H P+ A A+ASG Q HV P +P P +L AGR+ P +A R PP Sbjct: 271 PNAHLNLPKHAL-GAQASGNQ-HVVTPSKPERPMNLAPAGRQ--IPNQALNNRPFPP 323
>RECO_GEOSL (Q74FM9) DNA repair protein recO (Recombination protein O)| Length = 243 Score = 30.4 bits (67), Expect = 3.1 Identities = 26/75 (34%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Frame = +1 Query: 205 RRSPDYCXXXXXXXVDDAKRQMDGRRAGVGGMVLS*RASFGGEPSRPAS----HRCAGRG 372 R S D C DA RRAG G VL G P + HRC G G Sbjct: 147 RLSLDACAACGVEFPADA-----ARRAGAAGTVLCTGCGRYGAPLSAETVRLLHRCLGTG 201 Query: 373 RFGHATCPWVPEARA 417 RFG P P A Sbjct: 202 RFGAIVFPPEPLGEA 216
>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| (Flamingo homolog 2) (hFmi2) Length = 3014 Score = 30.0 bits (66), Expect = 4.0 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 21/90 (23%) Frame = -3 Query: 522 PSCRCPPPQ----TGRRSCLPTG----LWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTP 367 P+CRCPP GR CLP G L L G+ G L + T G P +P Sbjct: 154 PACRCPPRPRPRCPGRPICLPPGGSVRLRLLCALRRAAGAVRVGLAL-EAATAGTPSASP 212 Query: 366 S-------------GAPMRCRARGLSSKGS 316 S P R RG S +GS Sbjct: 213 SPSPPLPPNLPEARAGPARRARRGTSGRGS 242
>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1233 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -3 Query: 522 PSCRCPPPQTGRRSCLPTGLWT*RPLPEPTGSP*GG 415 P CP P++G CLPT P P G P GG Sbjct: 931 PPSPCPTPRSGPSPCLPTPDPPPEPSPTGWGPPDGG 966
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 3/85 (3%) Frame = -3 Query: 522 PSCRCPPPQTGRRSCLPTGLWT*RPLPEPTGSP*GGPC---LWDPGTRGMPETTPSGAPM 352 PS PPP P + P P P P P PG + ++P G Sbjct: 964 PSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKP 1023 Query: 351 RCRARGLSSKGSSSAEDHPTDARPS 277 + SS SSS +HP RPS Sbjct: 1024 PPTPQRNSSIKSSSGAEHPEPKRPS 1048
>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| Length = 845 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/60 (36%), Positives = 27/60 (45%) Frame = +3 Query: 45 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 224 R S S SK +R SSA SP + GPG +G S TNL + + GLL Sbjct: 356 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLVGLL 415
>GRB10_MOUSE (Q60760) Growth factor receptor-bound protein 10 (GRB10 adaptor| protein) Length = 621 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = +1 Query: 334 PSRPASHRCAGRGRFGHATCPWVPEARAASRAPRGLW*WPSGPQTCRKA*SAPGLWWRTS 513 PS+P + C GR W+P R +W W P + PGLW +T+ Sbjct: 109 PSQPPAKHC-GRCE------KWIPGENTRGNGKRKIWRWQFPPGFQLSKLTRPGLWTKTT 161
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = -3 Query: 507 PPPQTGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLS 328 PPP + L G T P +PT G P L P T PE++ P + G + Sbjct: 627 PPPLPPSQPPLSQGPATQAPSAQPTP---GEPLLAPPTTELKPESSNPNNPNPSSSAGSN 683 Query: 327 SKGSSSAEDHP 295 SS+ D+P Sbjct: 684 PPPKSSSSDNP 694
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/52 (36%), Positives = 22/52 (42%) Frame = -3 Query: 507 PPPQTGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPM 352 PPP G R P G+ P P P P GP ++ P P PSG M Sbjct: 335 PPPPPGMR--YPGGM----PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGM 380
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = -3 Query: 438 PTGSP*GGPCLWDPGTR----GMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 274 PTGS G P GTR + + P AP R +A S+ SSS +D PSA Sbjct: 862 PTGSAQGSPGADARGTRSGHDSIKQEAPDAAPRRSKA--FSNSSSSSEKDELESPPPSA 918
>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)| Length = 726 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 399 PGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 277 P + P + PSG P R + S GSSS+ +D+ S Sbjct: 685 PARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGSSSDSSDS 725
>CLK1_MOUSE (P22518) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) (Protein kinase STY) Length = 483 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 45 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQ 158 R S SH + +R HSSA RC +Y +S+ Sbjct: 23 RSSSSHKRKKRSHSSAREQKRCRYDHSKTTDSYYLESR 60
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 613 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +3 Query: 189 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 332 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 271 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 323
>HSP70_TRYCR (P05456) Heat shock 70 kDa protein| Length = 680 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +2 Query: 356 GAPEGVVSGMPR-VPGSQRHGPPHGLPVGSGSGLQVHKPVG 475 G P G+ GMP +PG G P G+P G G+ P G Sbjct: 625 GMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGG 665
>SAHH3_PONPY (Q5R889) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 508 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +3 Query: 189 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 332 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 166 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 218
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +3 Query: 189 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 332 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 269 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 321
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -2 Query: 409 PLGPRDTWHARNDPFRRTYEMPGERALLQRKL 314 P P D W P E+PG LLQR L Sbjct: 1366 PRQPHDVWPVSTAPLHAVLELPGALPLLQRPL 1397
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 375 TTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 274 TT S RC ++G SS+G S+A+ P+ PS+ Sbjct: 26 TTRSRRRRRCSSQGSSSRGPSTAQGSPSSWPPSS 59
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/42 (42%), Positives = 20/42 (47%) Frame = +2 Query: 380 GMPRVPGSQRHGPPHGLPVGSGSGLQVHKPVGRHDRRPVCGG 505 G R G R G G P GSGSG + V R +RP C G Sbjct: 40 GRGRGRGRGRGGGRPGAPGGSGSGPRHRDGVRRPQKRPSCIG 81
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 10 ARTQITQSIYIIVQVSHTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTW 189 A ITQ + + ++ RKPKG + +E +GR + TS++ E+ T+ Sbjct: 924 AGDDITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITI---TSEDGESVTY 980 Query: 190 QRPPGRR 210 P G R Sbjct: 981 SIPYGAR 987
>TLE2_BRARE (O13166) Groucho 2 protein| Length = 761 Score = 29.3 bits (64), Expect = 6.9 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Frame = +2 Query: 272 MAEGRASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLP--VGSG 445 M E A +G LPL + A+HL V P G Q P G+P GSG Sbjct: 116 MTELNAIIGVRGLPNLPLTQQLQAQHLSHTHGPVALTPPHPSGLQ----PPGIPPVTGSG 171 Query: 446 SGLQVHKPVGRHDRRP 493 SGL +G P Sbjct: 172 SGLLALGALGSQPHLP 187
>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein| EAR-1) (Rev-erbA-alpha) Length = 614 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Frame = +1 Query: 334 PSRPASHRCAGRGRFGHATCPW----VPEARAASRAPR 435 P PA H C GH CP PE +A + +PR Sbjct: 370 PPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPR 407
>TECT2_RAT (Q3B7D3) Tectonic-2 precursor| Length = 700 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +1 Query: 322 FGGEPSRPASHRCAGRGRFGHATCPWVP 405 FGG S P+ HRCA R H T W P Sbjct: 207 FGGYVSPPSHHRCAARTT--HQTPDWFP 232
>VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21| Length = 1467 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Frame = +2 Query: 272 MAEGRASVGWSSADELPLEESPLARHLIGAPEGVVS--GMPRVPGS----QRHGPPHGLP 433 +A+ RA++ A ++P ++ + P G+ G P +PG+ +G P+ LP Sbjct: 1081 IAQQRANLAAQRAGQIPSQQPMMNAPPGRTPNGIPHNPGTPGIPGATPNGMHNGMPNALP 1140 Query: 434 VGSGSGLQVHKPVGRHDRRPVCGGG 508 G G+ V + GR + V GG Sbjct: 1141 NGIPPGMGVSQ--GRPHMQGVPAGG 1163
>SYFB_VIBVY (Q7MK40) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -3 Query: 171 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCAS 10 FI C EN ++ P+LA +G SEEH + +L D+ A+ L A+ Sbjct: 576 FIPCDTAENGMRQEPMLAGVIAGTRSEEHWNIDTNTVDFFDLKGDVEAILELSAN 630
>SYFB_VIBVU (Q8DA39) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -3 Query: 171 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCAS 10 FI C EN ++ P+LA +G SEEH + +L D+ A+ L A+ Sbjct: 576 FIPCDTAENGMRQEPMLAGVIAGTRSEEHWNIDTNTVDFFDLKGDVEAILELSAN 630
>COAT_SOUV3 (Q04542) Capsid protein (Coat protein)| Length = 546 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/32 (43%), Positives = 14/32 (43%) Frame = -3 Query: 444 PEPTGSP*GGPCLWDPGTRGMPETTPSGAPMR 349 P P G P G C W P T SG PMR Sbjct: 318 PAPVGFPDFGKCDWHMRISKTPNNTGSGDPMR 349
>SOX10_HUMAN (P56693) Transcription factor SOX-10| Length = 466 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/76 (28%), Positives = 31/76 (40%) Frame = +2 Query: 281 GRASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSGLQV 460 G A G ++A + + + L G + G P P Q HGPP P + LQ Sbjct: 193 GEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTP-PTTPKTELQS 251 Query: 461 HKPVGRHDRRPVCGGG 508 K + D R + GG Sbjct: 252 GKADPKRDGRSMGEGG 267
>FAK1_XENLA (Q91738) Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK)| Length = 1068 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = -1 Query: 455 EGHYQSPRGAREAARASGTQGHVACPKRP----LPAHL*DAGREGSP 327 +G+ Q P G + + G HVA PK+P P+HL + SP Sbjct: 861 DGNIQCPAGNQHIYQPVGKPDHVAPPKKPPRPGAPSHLGNLPAHNSP 907 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,001,780 Number of Sequences: 219361 Number of extensions: 2229629 Number of successful extensions: 7543 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 6793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7506 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
