ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11n18 |
|---|---|
| Clone Library Name | barley_pub |
>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding| athanogene-3) (BAG-3) (Bcl-2-binding protein Bis) Length = 577 Score = 31.6 bits (70), Expect = 0.80 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -2 Query: 284 QKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNE 126 Q+S S GG E +T ++ G P+TA+ T +PP + S SPA ++ Sbjct: 134 QRSQSPLRGGMTEAAQTDKQCGQMPATAT--TAAAQPPTAHGPERSQSPAASD 184
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 254 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 138 ++E + +++AG PS+ S R RPP Q S SP Sbjct: 3468 EREAVERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESP 3506
>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear| protein related to AF4) Length = 1227 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 254 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSS 141 QQ RT RA + + +P CRT P S S+SSS Sbjct: 381 QQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSS 418
>CWC21_CRYNE (Q5KDV1) Pre-mRNA-splicing factor CWC21| Length = 205 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 282 EVRVSKMGRAAGVLENHEEGRRY 214 E+ +S++ RA GV NHEEGR + Sbjct: 125 EIEMSRLQRALGVSVNHEEGRAF 147
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -2 Query: 278 SGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 138 S S + ++E + +++AG PS+ S R RPP Q S SP Sbjct: 3456 SRSKGYERERETAQRLQKAGPKPSSLSMAHGRARPPMRSQASEEESP 3502
>CHEB_SALTY (P04042) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 302 RRRLKAQMPMATPVAXKSGYTSGRTHLLAIGVARGDDAA 418 R R+ A PMA P K+G L+AIG + G A Sbjct: 132 RARIAAHKPMAAPTTLKAGPLLSSEKLIAIGASTGGTEA 170
>CHEB_SALTI (Q8Z5V2) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 302 RRRLKAQMPMATPVAXKSGYTSGRTHLLAIGVARGDDAA 418 R R+ A PMA P K+G L+AIG + G A Sbjct: 132 RARIAAHKPMAAPTTLKAGPLLSSEKLIAIGASTGGTEA 170
>CHEB_SALPA (Q5PMY3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 302 RRRLKAQMPMATPVAXKSGYTSGRTHLLAIGVARGDDAA 418 R R+ A PMA P K+G L+AIG + G A Sbjct: 132 RARIAAHKPMAAPTTLKAGPLLSSEKLIAIGASTGGTEA 170
>CHEB_SALCH (Q57N81) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 302 RRRLKAQMPMATPVAXKSGYTSGRTHLLAIGVARGDDAA 418 R R+ A PMA P K+G L+AIG + G A Sbjct: 132 RARIAAHKPMAAPATLKAGPLLSSEKLIAIGASTGGTEA 170
>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50| Length = 552 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -2 Query: 239 RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 123 R RRAGATP + P + P ++ + S + PA A Sbjct: 10 RRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRA 48
>PDZK2_HUMAN (Q86UT5) PDZ domain-containing protein 2 (Intestinal and| kidney-enriched PDZ protein) (DLNB27 protein) Length = 571 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 172 GGLVLHVGSEAVLGVAPALLMVLKHSCCPPHLADP 276 G V E VLG+ P L + CCPPH DP Sbjct: 77 GHRVCQAHGEPVLGLCPLLPLF----CCPPHPPDP 107
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 257 GQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARN 129 GQ +C R+ TAS P C PR C+ +SSP ++ Sbjct: 1347 GQVKC----RKGEQCVHTASGPRCFCPSPRDCESGCASSPCQH 1385
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 28.9 bits (63), Expect = 5.2 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 160 WHDLGGLVLHVGSEAVLGVAPALLMVLKHSCCP 258 WH++ GL++ G + L V P L + CP Sbjct: 275 WHEINGLLVGFGQQTCLPVHPRCHACLNQALCP 307
>HAGA1_PORGI (P59915) Hemagglutinin A precursor| Length = 2164 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 9 YWMISSELWTQQHY*MLEIGLHLTTTVSNSESQTDSL 119 YW+ S E WT +HY G+ L+TT + + + T L Sbjct: 312 YWVSSQEPWTNEHY-----GVFLSTTGNEAANFTIKL 343
>TSH_DROME (P22265) Protein teashirt| Length = 954 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -2 Query: 230 RRAGATPSTASEPTCRTRPPRSCQES----TSSSPA 135 R + TPS+A+ P R PPRS ES T SPA Sbjct: 839 RSSPKTPSSAASPQTRLLPPRSPAESQRSVTPKSPA 874
>ERFB_GIBZE (Q4I2M7) Palmitoyltransferase ERF2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein ERF2) (Ras protein acyltransferase) Length = 679 Score = 28.9 bits (63), Expect = 5.2 Identities = 24/88 (27%), Positives = 37/88 (42%) Frame = -2 Query: 284 QKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEAL*TVCL 105 QK + R G + + A A+PS+ + PT T PRS + SSS +++ Sbjct: 131 QKLQAQRGGSHRPSTMSQMSAAASPSSPTSPTSPT-SPRSDEHGESSSSQMRQSI----- 184 Query: 104 *LAIRNCCGQVQTYFKHSVMLLRP*FRG 21 I N Q+Q + + P RG Sbjct: 185 ---ISNPIAQLQRQMSNEENMRPPPSRG 209
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 254 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 138 +++ +++AG+ PS+ S R RPP Q S SP Sbjct: 3478 ERDTAERLQKAGSKPSSLSMAHGRARPPMRSQASEEESP 3516
>MOT1_MOUSE (P53986) Monocarboxylate transporter 1 (MCT 1)| Length = 493 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 384 SKWVRPEVXPLFXATGVAIGIC 319 +KW+RP + F A+ VA G+C Sbjct: 315 TKWIRPRIQYFFAASVVANGVC 336
>MOT1_CRILO (Q03064) Monocarboxylate transporter 1 (MCT 1)| Length = 494 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 384 SKWVRPEVXPLFXATGVAIGIC 319 +KW+RP + F A+ VA G+C Sbjct: 315 TKWIRPRIQYFFAASVVANGVC 336
>RS15_ACIAD (Q6FF13) 30S ribosomal protein S15| Length = 89 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -1 Query: 324 ICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGLRAYVQ 184 I F+ N TG+PEV+V+ + L+ H + ++ H R ++ Sbjct: 12 IAKFARAENDTGSPEVQVALLTAQINDLQGHFKEHKHDHHSRRGLIR 58
>MOT1_MERUN (O35439) Monocarboxylate transporter 1 (MCT 1) (Fragment)| Length = 76 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 384 SKWVRPEVXPLFXATGVAIGIC 319 +KW+RP + F A+ VA G+C Sbjct: 21 TKWIRPRIQYFFAASVVANGVC 42
>Y502_TREPA (O83515) Hypothetical ANK-repeat protein TP0502| Length = 298 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = -1 Query: 309 LLRNITGNPEVRVSKMGRAAGVL----ENHEEGRRYAEHGLRAYVQDKTPEIMPGINKFF 142 LL + +P VR S G+ A VL ++H R +HG Y++DK G K F Sbjct: 229 LLLHAGADPNVRGSN-GQTALVLAVGRKDHVLIRLLMDHGANPYLEDKLGLSAQGYAKLF 287 Query: 141 TSPK*STL 118 P TL Sbjct: 288 NDPTLCTL 295
>PAD1_YEAST (P33751) Phenylacrylic acid decarboxylase (EC 4.1.1.-) (PAD)| Length = 242 Score = 28.1 bits (61), Expect = 8.8 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Frame = -1 Query: 408 SPRATPMASKWVRPE--VXPLFXATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLEN 235 S T ++ RP+ V + ATGVA+GI +L+ ++ + +SK G A E Sbjct: 41 SKEVTRASTSPPRPKRIVVAITGATGVALGIRLLQVLKELSVETHLVISKWGAATMKYET 100 Query: 234 HEEGRRYAEHGLRAY-VQDKTPEIMPG 157 E A + Y V+D + I G Sbjct: 101 DWEPHDVAALATKTYSVRDVSACISSG 127
>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 424 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -2 Query: 215 TPSTASEPTCRTRPPRSCQE 156 TP T+S PT R PR+C+E Sbjct: 204 TPGTSSSPTGRNPRPRACEE 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,759,004 Number of Sequences: 219361 Number of extensions: 925151 Number of successful extensions: 3113 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3103 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
