ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 813 0.0
2emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 541 e-151
3dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 4e-53
4dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 4e-53
5dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 4e-53
6gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 216 4e-53
7gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 208 1e-50
8gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 174 1e-40
9gb|AY104072.1| Zea mays PCO110104 mRNA sequence 137 3e-29
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
11dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
12ref|XM_477421.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
14dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
15dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
16gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 50 0.006
17emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chro... 48 0.023
18gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 46 0.091
19gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.36
20gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.36
21ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 ... 42 1.4
22gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete... 42 1.4
23emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 42 1.4
24gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 1.4
25gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromo... 42 1.4
26emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Co... 42 1.4
27emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Co... 42 1.4
28gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 1.4
29gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 5.6
30gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete se... 40 5.6
31ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.6
32gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 5.6
33emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.6
34emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.6
35gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 40 5.6
36gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 40 5.6
37gb|AY105424.1| Zea mays PCO129918 mRNA sequence 40 5.6
38gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.6 
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  813 bits (410), Expect = 0.0
 Identities = 417/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagaggtactggatgatatcctctgaattatggacgcaacaacattactgaatgcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttaagaggtactggatgatatcctctgaattatggacgcaacaacattactgaatgcttg 387

                                                                       
Query: 61  aaataggtttgcacttgaccacaacagtttctaatagcgagtcacagacagacagtctaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 386 aaataggtttgcacttgaccacaacagttgctaatagcgagtcacagacagacagtctaa 327

                                                                       
Query: 121 agtgcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgggggtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtgcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgggggtctt 267

                                                                       
Query: 181 gtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcatggttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcatggttctc 207

                                                                       
Query: 241 aagcactcctgctgccctccccatcttgctgaccctgacttctgggttgccggtgatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagcactcctgctgccctccccatcttgctgaccctgacttctgggttgccggtgatgtt 147

                                                                       
Query: 301 gcggaggaggctgaaggcgcagatgccgatggcgacgcccgtcgccgngaagagcggnta 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 146 gcggaggaggctgaaggcgcagatgccgatggcgacgcccgtcgccgcgaagagcgggta 87

                                                                       
Query: 361 cacctcgggacggacccacttgctggccatcggagtcgcgcgcggggatgacgctgcgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  cacctcgggacggacccacttgctggccatcggagtcgcgcgcggggatgacgctgcgcc 27
to top
>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  541 bits (273), Expect = e-151
 Identities = 276/277 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttaagaggtactggatgatatcctctgaattatggacgcaacaacattactgaatgcttg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 ttaagaggtactggatgatatcctctgaattatggacgcaacaacattactgaatgcttg 1529

                                                                        
Query: 61   aaataggtttgcacttgaccacaacagtttctaatagcgagtcacagacagacagtctaa 120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1528 aaataggtttgcacttgaccacaacagttgctaatagcgagtcacagacagacagtctaa 1469

                                                                        
Query: 121  agtgcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgggggtctt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 agtgcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgggggtctt 1409

                                                                        
Query: 181  gtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcatggttctc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1408 gtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcatggttctc 1349

                                                 
Query: 241  aagcactcctgctgccctccccatcttgctgaccctg 277
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1348 aagcactcctgctgccctccccatcttgctgaccctg 1312



 Score =  170 bits (86), Expect = 2e-39
 Identities = 90/92 (97%)
 Strand = Plus / Minus

                                                                       
Query: 274 cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 594

                                           
Query: 334 gacgcccgtcgccgngaagagcggntacacct 365
           |||||||||||||| ||||||||| |||||||
Sbjct: 593 gacgcccgtcgccgcgaagagcgggtacacct 562



 Score =  119 bits (60), Expect = 8e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                       
Query: 361 cacctcgggacggacccacttgctggccatcggagtcgcgcgcggggatgacgctgcgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacctcgggacggacccacttgctggccatcggagtcgcgcgcggggatgacgctgcgcc 426
to top
>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  216 bits (109), Expect = 4e-53
 Identities = 206/239 (86%)
 Strand = Plus / Minus

                                                                       
Query: 140 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 328 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 269

                                                                       
Query: 200 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 268 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 209

                                                                       
Query: 260 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 319
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 208 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 149

                                                                      
Query: 320 cagatgccgatggcgacgcccgtcgccgngaagagcggntacacctcgggacggaccca 378
           |||||||||| ||| |||||| |||||| ||| ||||| |||||||| || ||||||||
Sbjct: 148 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctccggtcggaccca 90
to top
>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  216 bits (109), Expect = 4e-53
 Identities = 206/239 (86%)
 Strand = Plus / Minus

                                                                       
Query: 140 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 325 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 266

                                                                       
Query: 200 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 265 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 206

                                                                       
Query: 260 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 319
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 205 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 146

                                                                      
Query: 320 cagatgccgatggcgacgcccgtcgccgngaagagcggntacacctcgggacggaccca 378
           |||||||||| ||| |||||| |||||| ||| ||||| |||||||| || ||||||||
Sbjct: 145 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctccggtcggaccca 87
to top
>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  216 bits (109), Expect = 4e-53
 Identities = 206/239 (86%)
 Strand = Plus / Minus

                                                                       
Query: 140 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 322 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 263

                                                                       
Query: 200 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 262 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 203

                                                                       
Query: 260 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 319
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 202 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 143

                                                                      
Query: 320 cagatgccgatggcgacgcccgtcgccgngaagagcggntacacctcgggacggaccca 378
           |||||||||| ||| |||||| |||||| ||| ||||| |||||||| || ||||||||
Sbjct: 142 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctccggtcggaccca 84
to top
>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  216 bits (109), Expect = 4e-53
 Identities = 206/239 (86%)
 Strand = Plus / Minus

                                                                       
Query: 140 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 294 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 235

                                                                       
Query: 200 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 234 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 175

                                                                       
Query: 260 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 319
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 174 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 115

                                                                      
Query: 320 cagatgccgatggcgacgcccgtcgccgngaagagcggntacacctcgggacggaccca 378
           |||||||||| ||| |||||| |||||| ||| ||||| |||||||| || ||||||||
Sbjct: 114 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctccggtcggaccca 56
to top
>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score =  208 bits (105), Expect = 1e-50
 Identities = 205/239 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
           ||||| |||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 265 gtgaaaaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 206

                                                                       
Query: 200 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 205 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 146

                                                                       
Query: 260 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 319
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 145 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 86

                                                                      
Query: 320 cagatgccgatggcgacgcccgtcgccgngaagagcggntacacctcgggacggaccca 378
           |||||||||| ||| |||||| |||||| ||| ||||| |||||||| || ||||||||
Sbjct: 85  cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctccggtcggaccca 27
to top
>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  174 bits (88), Expect = 1e-40
 Identities = 211/250 (84%), Gaps = 2/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 143 aagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctgagg 202
           ||||||||||||||  ||||||||||||||||||||||||| |||||  ||  |||||||
Sbjct: 483 aagaacttgttgatagctggcatgatctcgggggtcttgtcgtgcacaaagcttctgagg 424

                                                                       
Query: 203 ccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctcccc 262
           || |||  |||||| ||||| ||||||||||||||||||||||| || ||||||||||| 
Sbjct: 423 ccatgcatggcgtaacgcctcccctcctcatggttctcaagcacgccggctgccctccct 364

                                                                       
Query: 263 atcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctg-aaggcgca 321
             |||| | ||||||||||| ||||||||||||||||| |||| || |||| ||  ||||
Sbjct: 363 gccttgtttaccctgacttccgggttgccggtgatgttccggaaga-gctgaaacccgca 305

                                                                       
Query: 322 gatgccgatggcgacgcccgtcgccgngaagagcggntacacctcgggacggacccactt 381
           |||||| | ||| || ||| |||||| ||| || || ||||||||||| ||||||||   
Sbjct: 304 gatgccaacggcaactcccatcgccgcgaacagggggtacacctcgggtcggacccaggg 245

                     
Query: 382 gctggccatc 391
           ||||||||||
Sbjct: 244 gctggccatc 235
to top
>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score =  137 bits (69), Expect = 3e-29
 Identities = 189/227 (83%), Gaps = 2/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 140 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
           |||||||||||||| | | | ||||||||||| || |||||||| |||||  ||  ||| 
Sbjct: 359 gtgaagaacttgttaactgcaggcatgatctcaggagtcttgtcgtgcacaaagcttctt 300

                                                                       
Query: 200 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
           ||||| |||  |||||| || || ||||||||||||||||||||||| || |||||||||
Sbjct: 299 aggccatgcatggcgtaacgtctcccctcctcatggttctcaagcacaccagctgccctc 240

                                                                       
Query: 260 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctg-aaggc 318
           ||   |||| | ||||||||||| |||||||| |||||||| |||| || |||| ||  |
Sbjct: 239 cctgccttgtttaccctgacttccgggttgccagtgatgttccggaaga-gctgaaaccc 181

                                                          
Query: 319 gcagatgccgatggcgacgcccgtcgccgngaagagcggntacacct 365
           ||||||||||| ||| ||||||||||||| ||| ||||| |||||||
Sbjct: 180 gcagatgccgacggccacgcccgtcgccgcgaacagcgggtacacct 134
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                           
Query: 140     gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
               |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 7602745 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 7602804

                                                                           
Query: 200     aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
               || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 7602805 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 7602864

                                  
Query: 260     cccatcttgctgaccctga 278
               || | |||| | |||||||
Sbjct: 7602865 cctaccttgttaaccctga 7602883



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                           
Query: 274     cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 333
               ||||||||| |||||||||||||||||||||| |||   |||| |||||||||||| |||
Sbjct: 7603858 cctgacttcggggttgccggtgatgttgcggaagagctggaagccgcagatgccgacggc 7603917

                                               
Query: 334     gacgcccgtcgccgngaagagcggntacacct 365
                |||||| |||||| ||| ||||| |||||||
Sbjct: 7603918 cacgcccatcgccgcgaacagcgggtacacct 7603949
to top
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                         
Query: 140   gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 199
             |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 26000 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 26059

                                                                         
Query: 200   aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 259
             || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 26060 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 26119

                                
Query: 260   cccatcttgctgaccctga 278
             || | |||| | |||||||
Sbjct: 26120 cctaccttgttaaccctga 26138



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                         
Query: 274   cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 333
             ||||||||| |||||||||||||||||||||| |||   |||| |||||||||||| |||
Sbjct: 27113 cctgacttcggggttgccggtgatgttgcggaagagctggaagccgcagatgccgacggc 27172

                                             
Query: 334   gacgcccgtcgccgngaagagcggntacacct 365
              |||||| |||||| ||| ||||| |||||||
Sbjct: 27173 cacgcccatcgccgcgaacagcgggtacacct 27204
to top
>ref|XM_477421.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 297

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 89/108 (82%)
 Strand = Plus / Minus

                                                                       
Query: 272 accctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatg 331
           ||||||||||| |||||||||||||||||||||| |||   |  | ||||||||  || |
Sbjct: 146 accctgacttcggggttgccggtgatgttgcggacgagctggccgacgcagatggagacg 87

                                                           
Query: 332 gcgacgcccgtcgccgngaagagcggntacacctcgggacggacccac 379
           |||||||| || ||   ||||||||| ||||||||||| |||| ||||
Sbjct: 86  gcgacgccggtggcgaggaagagcgggtacacctcggggcggatccac 39
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 274      cctgacttctgggttgccggtgatgttgcgga 305
                ||||||||| ||||||||||||||||||||||
Sbjct: 10264380 cctgacttcggggttgccggtgatgttgcgga 10264349
to top
>dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0032G22
          Length = 127365

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                              
Query: 274    cctgacttctgggttgccggtgatgttgcgga 305
              ||||||||| ||||||||||||||||||||||
Sbjct: 123117 cctgacttcggggttgccggtgatgttgcgga 123086
to top
>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1029H08
          Length = 137050

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 274   cctgacttctgggttgccggtgatgttgcgga 305
             ||||||||| ||||||||||||||||||||||
Sbjct: 86299 cctgacttcggggttgccggtgatgttgcgga 86268
to top
>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 140 gtgaagaacttgttgattcctggcatgat 168
           |||||||||||||||||||| ||||||||
Sbjct: 310 gtgaagaacttgttgattccaggcatgat 282
to top
>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 264    tcttgctgaccctgacttctgggt 287
              ||||||||||||||||||||||||
Sbjct: 130420 tcttgctgaccctgacttctgggt 130397
to top
>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 146   aacttgttgattcctggcatgat 168
             |||||||||||||||||||||||
Sbjct: 15085 aacttgttgattcctggcatgat 15107
to top
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 221   ctgccctcctcatggttctcaagcac 246
             |||||||||||||||||| |||||||
Sbjct: 39836 ctgccctcctcatggttcacaagcac 39861
to top
>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 221   ctgccctcctcatggttctcaagcac 246
             |||||||||||||||||| |||||||
Sbjct: 10630 ctgccctcctcatggttcacaagcac 10605
to top
>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds
          Length = 588

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 140 gtgaagaacttgttgattcctggcatgat 168
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
to top
>gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete sequence
          Length = 81854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   tcctgctgccctccccatctt 267
             |||||||||||||||||||||
Sbjct: 46605 tcctgctgccctccccatctt 46585
to top
>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 140   gtgaagaacttgttgattcctggcatgat 168
             |||||||||||||||| ||| ||||||||
Sbjct: 12996 gtgaagaacttgttgagtccaggcatgat 12968
to top
>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 558

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 140 gtgaagaacttgttgattcctggcatgat 168
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
to top
>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete
            sequence
          Length = 162075

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 247  tcctgctgccctccccatctt 267
            |||||||||||||||||||||
Sbjct: 3856 tcctgctgccctccccatctt 3876
to top
>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 140 gtgaagaacttgttgattcctggcatgat 168
           |||||||||||||||| ||| ||||||||
Sbjct: 304 gtgaagaacttgttgagtccaggcatgat 276
to top
>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 515

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 140 gtgaagaacttgttgattcctggcatgat 168
           |||||||||||||||| ||| ||||||||
Sbjct: 212 gtgaagaacttgttgagtccaggcatgat 240
to top
>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 350

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 140 gtgaagaacttgttgattcctggcatgat 168
           |||||||||||||||| ||| ||||||||
Sbjct: 251 gtgaagaacttgttgagtccaggcatgat 223
to top
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      gcacttgaccacaacagttt 90
               ||||||||||||||||||||
Sbjct: 1954948 gcacttgaccacaacagttt 1954929
to top
>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence
          Length = 39974

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   agcactcctgctgccctccc 261
             ||||||||||||||||||||
Sbjct: 18360 agcactcctgctgccctccc 18341
to top
>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 ttctcaagcactcctgctgc 255
           ||||||||||||||||||||
Sbjct: 917 ttctcaagcactcctgctgc 898
to top
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 88    tttctaatagcgagtcacagacagacag 115
             ||||||| ||||||||||||||| ||||
Sbjct: 18855 tttctaaaagcgagtcacagacacacag 18882
to top
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   gccgtgctcggcgtagcgcc 221
             ||||||||||||||||||||
Sbjct: 58257 gccgtgctcggcgtagcgcc 58276
to top
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   gccgtgctcggcgtagcgcc 221
             ||||||||||||||||||||
Sbjct: 21961 gccgtgctcggcgtagcgcc 21942
to top
>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    cctgctgccctccccatcttgctg 271
              |||||||||||||||| |||||||
Sbjct: 117817 cctgctgccctccccaccttgctg 117794
to top
>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  gccgtgctcggcgtagcgcc 221
            ||||||||||||||||||||
Sbjct: 4564 gccgtgctcggcgtagcgcc 4545
to top
>gb|AY105424.1| Zea mays PCO129918 mRNA sequence
          Length = 681

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 353 agcggntacacctcgggacggacccac 379
           ||||| |||||||||||||||| ||||
Sbjct: 130 agcgggtacacctcgggacggatccac 104
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 324     tgccgatggcgacgcccgtcgccg 347
               |||||||||||||||||| |||||
Sbjct: 1067557 tgccgatggcgacgcccgccgccg 1067580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,366,413
Number of Sequences: 3902068
Number of extensions: 3366413
Number of successful extensions: 89450
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89299
Number of HSP's gapped (non-prelim): 149
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top