>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1|
          Length = 2097

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 6/108 (5%)
 Frame = -1

Query: 645  EFSSALEEELXKLPPHSVPEPPKYPLLQVIS-HDRSMLRKAPTLVQPSSKLS-DEKNTVL 472
            +F   +E+ L    P S+   P+ PL+  ++ HDRS +RK   LV P+ K   +E+N +L
Sbjct: 1974 QFEPKVEDHLLIKKPVSIRNIPRNPLVDAVAAHDRSTMRKVSELVAPTDKSKPNERNLLL 2033

Query: 471  DEIKNKTFNLKPV-VAKRPNVMGGPRT---NLQVAAILERANAIRQAV 340
            ++I+NKTFNLKPV  AK+P +   PR    NL+VAAI+E+ANAIRQAV
Sbjct: 2034 EQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKANAIRQAV 2081

>SCAR2_ARATH (Q5XPJ9) Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein DISTORTED3)|
            (Protein IRREGULAR TRICHOME BRANCH1)
          Length = 1399

 Score = 80.1 bits (196), Expect = 6e-15
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
 Frame = -1

Query: 582  PKYPLLQVIS-HDRSMLRKAPTLVQPSSKLS-DEKNTVLDEIKNKTFNLKPVVAKRPNVM 409
            P+ PL+  ++ HDR  ++K   +V P  K   D+K+++L +I+NK+ NLKP V  RP++ 
Sbjct: 1302 PRSPLVDAVAAHDRRKMKKVSEMVHPPIKSKQDDKDSLLAQIRNKSVNLKPAVTTRPSIQ 1361

Query: 408  GGPRTNLQVAAILERANAIRQAVA 337
             GPRT+L+VAAILE+AN IR A+A
Sbjct: 1362 TGPRTDLRVAAILEKANTIRMAMA 1385

>SCAR4_ARATH (Q5XPJ6) Protein SCAR4 (AtSCAR4) (Protein WAVE3)|
          Length = 1170

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
 Frame = -1

Query: 561  VISHDRSMLRKAP--TLVQPSSKLSDEKNTVLDEIKNKTFNLKPVVAK-RPNV-MGGPRT 394
            VI  DRSMLRK          +++ DE +++L+ I++K+FNL+P  A  RPN  +  P+T
Sbjct: 1080 VIGIDRSMLRKVSEGNRTHVGARV-DENDSLLEIIRSKSFNLRPADASGRPNFQVAVPKT 1138

Query: 393  NLQVAAILERANAIRQAVA 337
            NL+VAAILE+AN +RQA+A
Sbjct: 1139 NLKVAAILEKANTLRQAMA 1157

>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2|
          Length = 1334

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 39/114 (34%), Positives = 57/114 (50%)
 Frame = -1

Query: 678  QQEDSSNDMVKEFSSALEEELXKLPPHSVPEPPKYPLLQVISHDRSMLRKAPTLVQPSSK 499
            ++ D   D VKE S+ L+ E+       + +      L    H++S        V   +K
Sbjct: 1216 KENDRKVDGVKEISNPLDIEIRASLLQQIRDKSGQQKLN--GHEKSKA------VGNDTK 1267

Query: 498  LSDEKNTVLDEIKNKTFNLKPVVAKRPNVMGGPRTNLQVAAILERANAIRQAVA 337
              DE+  +L +I++KTFNL+   A + N       N  V AILE+ANAIRQAVA
Sbjct: 1268 NLDEREELLQQIRSKTFNLRRTNASKTNTSSPTTANSSVVAILEKANAIRQAVA 1321

>SCAR3_ARATH (Q9LP46) Protein SCAR3 (AtSCAR3) (Protein WAVE2)|
          Length = 1020

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = -1

Query: 573  PLLQVISHDRSMLRKAPTLVQPSSKLSDEKNTVLDEIKNKTFNLKPVV---AKRPNVMGG 403
            P  ++ +H ++ +R+     Q ++    E    L +I+ + FNL+PVV            
Sbjct: 929  PKPEIKAHLKNNVREEK---QSANAKETETGDFLQQIRTQQFNLRPVVMTTTSSATATTD 985

Query: 402  PRTNLQVAAILERANAIRQAVA 337
            P  N +++AILE+AN+IRQAVA
Sbjct: 986  PIINTKISAILEKANSIRQAVA 1007

>SCAR1_ARATH (Q6AWX6) Protein SCAR1 (AtSCAR1) (Protein WAVE1)|
          Length = 821

 Score = 37.0 bits (84), Expect = 0.057
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = -1

Query: 489 EKNTVLDEIKNKTFNLKPVVAKRPNVMGGPRTNLQVAAILERANAIRQAVA 337
           E    L +I+ K FNL+ VV  + +       N  ++ ILE+AN+IRQAVA
Sbjct: 756 EAGDFLHQIRTKQFNLRRVVRTKTS-SSETTMNTNISVILEKANSIRQAVA 805

>YM92_CAEEL (P34531) Hypothetical protein M01A8.2 in chromosome III|
          Length = 937

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
 Frame = -1

Query: 684 SVQQEDSSNDMVKEFSSALEEEL----XKLPPHSVPEPPKYPLLQVISHDRSMLRKAPTL 517
           S +++D+ +D      S   EE      K  P + P PPK+P+ Q       ++     +
Sbjct: 322 SSKKDDTKSDKSPTKKSQKMEEKPVVKKKEEPAAPPPPPKFPVKQKAPSKHQLM-----M 376

Query: 516 VQPSSKLSDEKNTVLDEIKNKTFNLKPVVAKRP---NVMGGPRT 394
            Q  + +  EK     EIK++   L P   K P   N  GG  T
Sbjct: 377 EQLKASIEAEKTKPKKEIKSRVSLLPPPAPKAPQKENKEGGEMT 420

>BUB1_YEAST (P41695) Checkpoint serine/threonine-protein kinase BUB1 (EC|
           2.7.11.1)
          Length = 1021

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/69 (20%), Positives = 29/69 (42%)
 Frame = -1

Query: 675 QEDSSNDMVKEFSSALEEELXKLPPHSVPEPPKYPLLQVISHDRSMLRKAPTLVQPSSKL 496
           ++  S D  +  +      +   P  + PEP    LLQ   H        PT++ P +K+
Sbjct: 574 EDKKSGDNTETQTQLTSTTIQSSPFLTQPEPQAEKLLQTAEHSEKSKEHYPTIIPPFTKI 633

Query: 495 SDEKNTVLD 469
            ++   +++
Sbjct: 634 KNQPPVIIE 642

>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)|
          Length = 1544

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -1

Query: 606 PPHSVPEPPKYPL-LQVISH---DRSMLRKAPTLVQPSSKLSDEKNTVL 472
           PP S+P PP+ P+ L  + H   D   L+K+   ++P+ +L+ E + V+
Sbjct: 772 PPLSLPPPPQGPMQLSTVGHGDRDHEHLQKSAKALRPTPQLAAEGDAVV 820

>LDLR_MOUSE (P35951) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 864

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 457 QDFQLETGCCKETKCDGWSKNKLTSGG-HSREGQCDSPGGCR 335
           +D   E GC   T+CDG +K K  SG   S +  CDS   C+
Sbjct: 263 KDMSDELGCVNVTQCDGPNKFKCHSGECISLDKVCDSARDCQ 304

>LDLR_CRIGR (P35950) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 854

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 457 QDFQLETGCCKETKCDGWSKNKLTSGG-HSREGQCDSPGGCR 335
           +D   E GC   T+CDG +K K  SG   + +  CDS   CR
Sbjct: 263 KDMSDELGCINVTQCDGPNKFKCHSGECIALDKVCDSMRDCR 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,252,951
Number of Sequences: 219361
Number of extensions: 1918858
Number of successful extensions: 5534
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5522
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)