ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11n15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRF_THET2 (P96076) Orotidine 5'-phosphate decarboxylase (EC 4.1... 31 2.4
2DHMA2_MYCTU (P64303) Haloalkane dehalogenase 2 (EC 3.8.1.5) 30 4.1
3DHMA2_MYCBO (P64304) Haloalkane dehalogenase 2 (EC 3.8.1.5) 30 4.1
4MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... 30 5.4
5AGO2_DROME (Q9VUQ5) Argonaute 2 protein 30 5.4

>PYRF_THET2 (P96076) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 257

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -3

Query: 354 GVVEGYRAEVPGLAPRCRTTGHHEPHQPPELHRQGPQPLRPKTLRFAVVRKLYPDG 187
           G+V G  A  P    R R    H P   P +  QG +PL+ + L FA  R LY  G
Sbjct: 183 GMVVG--ATYPEAVARVRERAPHAPLLLPGVGAQGGRPLKGEGLLFAASRALYYPG 236



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>DHMA2_MYCTU (P64303) Haloalkane dehalogenase 2 (EC 3.8.1.5)|
          Length = 286

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
 Frame = -1

Query: 449 LVGSCVISYACDYIVSQKKIFGGTIP------------GTVSDKEW-WKATEQRFQAWPR 309
           ++G  V     D  +S  + +GG I             G V    W W A     +A+ R
Sbjct: 90  VIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSR 149

Query: 308 VAGPPVIMNPISRQNFIVKDLNP*G 234
           V   P +   I R+NF V+ L P G
Sbjct: 150 VMSSPPVQYAILRRNFFVERLIPAG 174



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>DHMA2_MYCBO (P64304) Haloalkane dehalogenase 2 (EC 3.8.1.5)|
          Length = 286

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
 Frame = -1

Query: 449 LVGSCVISYACDYIVSQKKIFGGTIP------------GTVSDKEW-WKATEQRFQAWPR 309
           ++G  V     D  +S  + +GG I             G V    W W A     +A+ R
Sbjct: 90  VIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSR 149

Query: 308 VAGPPVIMNPISRQNFIVKDLNP*G 234
           V   P +   I R+NF V+ L P G
Sbjct: 150 VMSSPPVQYAILRRNFFVERLIPAG 174



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>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1734

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
 Frame = -3

Query: 402  SEEDLWWHHPRDRLG---QGVVEGY-----RAEVPGLAPR--CRTTGHHE---PHQPPEL 262
            +EED + H    + G    G+V G      R +VPGL+PR   R     E   P Q P L
Sbjct: 1480 TEEDTFLHRDLKKQGPVLSGLVTGATLGSPRVDVPGLSPRKVSRPQAFEEATNPLQVPSL 1539

Query: 261  HRQGPQPLRP 232
             R GP    P
Sbjct: 1540 SRSGPTSPTP 1549



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>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 357 QGVVEGYRAEVPGLAP-RCRTTGHHEPHQPPELHRQGPQPLRPK 229
           QG   GY+   PG  P + ++ G ++   PP+  +  P PL P+
Sbjct: 357 QGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQQQQAAPLPLPPQ 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,714,135
Number of Sequences: 219361
Number of extensions: 1474082
Number of successful extensions: 4030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4029
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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