ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interacto... 32 1.6
2ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger prote... 26 2.1
3CRLS1_RAT (Q5U2V5) Cardiolipin synthetase (EC 2.7.8.-) (Cardioli... 29 7.8

>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 568

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +1

Query: 367 RSNHQEDCSQPEQAQGGPAAVLSPW--ARRCLPDGR*SSLQ-----EEHCPVRRSWRMGG 525
           R N Q  C+  +  QGG  + L     ARR L   R SSL+     EE+ P+RR   + G
Sbjct: 215 RQNSQNYCALEQSGQGGSTSALEQLQRARRRLISQR-SSLETLEDIEENAPLRRCRTLSG 273

Query: 526 SP 531
           SP
Sbjct: 274 SP 275



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>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the|
           cerebellum 5)
          Length = 639

 Score = 25.8 bits (55), Expect(2) = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 331 PPPPKPSFLAKFCPCLAGGGATS 263
           PPPP P  L+ +    +GGG +S
Sbjct: 143 PPPPPPPALSGYTTTNSGGGGSS 165



 Score = 23.9 bits (50), Expect(2) = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 379 GDYFVGRPSNHEQNTTPPPPKP 314
           G Y  G  S+  Q + PPPP P
Sbjct: 110 GSYPCGGGSSGAQPSAPPPPAP 131



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>CRLS1_RAT (Q5U2V5) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)|
           (CLS)
          Length = 302

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
 Frame = -1

Query: 497 GQCSSWRLLHRPSGKHRRAQGERTAAGPP*ACS-GCEQSSW*L------LRRPPVKPRAE 339
           G   S R+  RP G      G R A  PP AC  GC    W L      LR P   PR  
Sbjct: 9   GAWGSLRVAVRPPGARLGRGGSRRALLPPAACCLGCLAERWRLRPAAFALRLPGTSPRTH 68

Query: 338 HDAA 327
              A
Sbjct: 69  CSGA 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,034,317
Number of Sequences: 219361
Number of extensions: 1629391
Number of successful extensions: 4790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4776
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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