ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B2_DAUCA (P37707) B2 protein 54 2e-07
2ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (A... 32 0.88
3IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment) 32 1.2
4ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (A... 31 2.0
5ALDO4_ARATH (Q7G191) Aldehyde oxidase 4 (EC 1.2.3.1) (AtAO-4) (A... 30 2.6
6APBB3_HUMAN (O95704) Amyloid beta A4 precursor protein-binding f... 30 3.3
7AROC_SYNEL (Q8DLM1) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 30 4.4
8AROC_ANASP (Q8YYP9) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 29 5.7
9MURD_SYNY3 (P73668) UDP-N-acetylmuramoylalanine--D-glutamate lig... 29 5.7
10ADA2A_RAT (P22909) Alpha-2A adrenergic receptor (Alpha-2A adreno... 29 7.5
11ADA2A_MOUSE (Q01338) Alpha-2A adrenergic receptor (Alpha-2A adre... 29 7.5
12SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7... 29 7.5
13MOT3_MOUSE (O35308) Monocarboxylate transporter 3 (MCT 3) (Proto... 28 9.7
14DPOE1_MOUSE (Q9WVF7) DNA polymerase epsilon, catalytic subunit A... 28 9.7

>B2_DAUCA (P37707) B2 protein|
          Length = 207

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = -3

Query: 480 AFRPVLHHYDGPKFRLELSIAETLSLLDLCKSEDA 376
           +FRP+LHHYDGPKFRLEL+I E +SLLD+ +   A
Sbjct: 173 SFRPILHHYDGPKFRLELNIPEAISLLDIFEETKA 207



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>ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (AtAO1)|
          Length = 1368

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -3

Query: 453 DGPKFRLELS-IAETLSLLDLCKSEDA*SA-----SEHGCGCSVVLFSKYHP 316
           +G +F LELS I  + +L+D  +++    +      E GCG  VVL SKY P
Sbjct: 26  NGQRFELELSSIDPSTTLVDFLRNKTPFKSVKLGCGEGGCGACVVLLSKYDP 77



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>IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment)|
          Length = 646

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 HLRGLLLPSTRSFLGEMQPPTNSLRFHGRRTEQNIVKTSSTTYR 317
           H  G LL    + L +++ P      +G+R   N++KTS TT++
Sbjct: 589 HCFGFLLHLPSNELSKVESPETETSVYGKRLVYNLIKTSPTTFK 632



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>ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (AtAO3)|
          Length = 1321

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -3

Query: 453 DGPKFRLELSIAE-TLSLLDLCKSEDA*-----SASEHGCGCSVVLFSKYHP 316
           +G +F LELS  + + +LL+  + + +      S  E GCG  VVL SK+ P
Sbjct: 8   NGQRFELELSSVDPSTTLLEFLRYQTSFKSVKLSCGEGGCGACVVLLSKFDP 59



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>ALDO4_ARATH (Q7G191) Aldehyde oxidase 4 (EC 1.2.3.1) (AtAO-4) (AtAO2)|
          Length = 1337

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -3

Query: 453 DGPKFRLELSIAETLSLLDLCKSEDA*-----SASEHGCGCSVVLFSKYHP 316
           +G KF + LS+  + +LL+  +S         S  E GCG  +V+ SKY P
Sbjct: 11  NGEKFEV-LSVNPSTTLLEFLRSNTCFKSVKLSCGEGGCGACIVILSKYDP 60



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>APBB3_HUMAN (O95704) Amyloid beta A4 precursor protein-binding family B member|
           3 (Fe65-like protein 2) (Fe65L2)
          Length = 486

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 18  PPSLWGIHDASQQYPPHLSGGFPRWRRAYCTTNT*IRRTYRSPRLRTNGTNTETGSHLRG 197
           PP    IHDA+  Y  H+  G  +W+R           T+        GT TE    + G
Sbjct: 32  PPGWRKIHDAAGTYYWHVPSGSTQWQRP----------TWELGDAEDPGTGTE---GIWG 78

Query: 198 LLLPSTRSF--LGEMQPPTNSLRFHG 269
           L  P  RSF  L      +NSL ++G
Sbjct: 79  LRPPKGRSFSSLESSLDRSNSLSWYG 104



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>AROC_SYNEL (Q8DLM1) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 363

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +2

Query: 26  TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 205
           T GH   +TT      GGV  +  G      +++ +IQ  +  D R   + RLT+ R  S
Sbjct: 4   TFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQ--KELDRRRPGQSRLTTPRQES 61

Query: 206 SKYQVLSG 229
            + ++LSG
Sbjct: 62  DRCEILSG 69



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>AROC_ANASP (Q8YYP9) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 26  TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 205
           T GH   ITT      GGV  +  G      I+ E IQ+    D R   + ++T+ R  +
Sbjct: 4   TFGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLE--LDRRRPGQSKITTPRKEA 61

Query: 206 SKYQVLSG 229
              ++LSG
Sbjct: 62  DTCEILSG 69



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>MURD_SYNY3 (P73668) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 452

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
 Frame = +3

Query: 165 TNTETGSHLRGLLLPSTRSFL--------GEMQPPTNSLRFHGRRTEQNIVKTSSTTYRD 320
           T+T+  +HL GL  P    +L        GE+  P N  +  G+  +QN++   +     
Sbjct: 234 TSTQGANHLAGLCDPKQGVYLQDNWVNAFGELIAPINLFKMPGQHNQQNLLMAIAAARLA 293

Query: 321 DIY*K---EPQSNHTHVPKQIRRLLTCKGL 401
            I  K   E     T VP ++  + T  G+
Sbjct: 294 GIDKKAITETLLTFTGVPHRLEPICTINGV 323



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>ADA2A_RAT (P22909) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR) (CA2-47)
           (Alpha-2D adrenergic receptor)
          Length = 450

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 139 LYVLLIYVFVVQYARRQRGNPPERWGGYCCDA 44
           L ++L+YV + Q A+R+   PP R G   C A
Sbjct: 210 LIMILVYVRIYQIAKRRTRVPPSRRGPDACSA 241



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>ADA2A_MOUSE (Q01338) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 139 LYVLLIYVFVVQYARRQRGNPPERWGGYCCDA 44
           L ++L+YV + Q A+R+   PP R G   C A
Sbjct: 210 LIMILVYVRIYQIAKRRTRVPPSRRGPDACSA 241



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>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)|
          Length = 3218

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 329  VNIIPVSCGRCFHNVLFCPSSMKAQAVGWWLHFPQK-GPGTWK 204
            ++++PVS GRC +   F  S++  + + W     Q   PG+W+
Sbjct: 1242 LSLLPVSSGRCQNRSKFISSAILMRCLAWTQLLRQHCAPGSWE 1284



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>MOT3_MOUSE (O35308) Monocarboxylate transporter 3 (MCT 3) (Proton-coupled|
           monocarboxylate transporter 3)
          Length = 492

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 125 YLCICSAVCPPPAGKPPRK 69
           + C C AV  PP G PPR+
Sbjct: 186 HCCACGAVMRPPPGPPPRR 204



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>DPOE1_MOUSE (Q9WVF7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2283

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 20   ALTLGHS*C---ITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDR 181
            +LT+  S C   +  + P ++GG+       +H   + +++ Q  E TDE  + +++
Sbjct: 1901 SLTISFSRCWEFLLWMDPSNYGGIKGKVPSSIHCGQVKEQDSQAREETDEEEEDKEK 1957


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,689,040
Number of Sequences: 219361
Number of extensions: 1841307
Number of successful extensions: 4640
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4634
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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