ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd11n03 |
|---|---|
| Clone Library Name | barley_pub |
>MITF_RAT (O88368) Microphthalmia-associated transcription factor (Fragment)| Length = 110 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG+ + D D Sbjct: 23 DNHNLIERRRRFNINDRIKELGTLIPKSNDPD 54
>MITF_MOUSE (Q08874) Microphthalmia-associated transcription factor| Length = 526 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG+ + D D Sbjct: 314 DNHNLIERRRRFNINDRIKELGTLIPKSNDPD 345
>MITF_HUMAN (O75030) Microphthalmia-associated transcription factor| Length = 526 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG+ + D D Sbjct: 314 DNHNLIERRRRFNINDRIKELGTLIPKSNDPD 345
>TFEB_HUMAN (P19484) Transcription factor EB| Length = 476 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG + D D Sbjct: 238 DNHNLIERRRRFNINDRIKELGMLIPKANDLD 269
>TFEB_MOUSE (Q9R210) Transcription factor EB| Length = 475 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG + D D Sbjct: 237 DNHNLIERRRRFNINDRIKELGMLIPKANDLD 268
>TFE3_HUMAN (P19532) Transcription factor E3| Length = 743 Score = 30.8 bits (68), Expect = 3.6 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG+ + +D + Sbjct: 349 DNHNLIERRRRFNINDRIKELGTLIPKSSDPE 380
>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130| (Serine-arginine-rich splicing regulatory protein 130) (SRrp130) (SR-rich protein) (SR-related protein) Length = 805 Score = 30.4 bits (67), Expect = 4.7 Identities = 20/76 (26%), Positives = 35/76 (46%) Frame = +2 Query: 116 GAPSEHSRRKQVAVDISPISFKPSHEISTTHQSSSLNTALQKNRRAHLVKRNPSSRSPFH 295 G+PS +SR + +S S+ S S T SS K ++ H R+P+ ++ Sbjct: 516 GSPSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSS----PKRKKRHSRSRSPTIKARRS 571 Query: 296 GKRKYTNLDFLETKKA 343 R Y+ +E+ +A Sbjct: 572 RSRSYSRRIKIESNRA 587
>MURG_XANC5 (Q3BXF2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 431 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 203 THQSSSLNTALQKNRRAHLVKRNPSSRSPFHG 298 TH+ S+ T++ +R A L+ NP SR P G Sbjct: 393 THKQGSMQTSVNGDRSAQLIATNPQSRLPNPG 424
>LEU3_BLOPB (Q493R1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 366 Score = 30.4 bits (67), Expect = 4.7 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -1 Query: 450 LHNNYNLVHRLRRFQLADQLAELGSWTRRLTDQDSDAFFVSKKSRFVYFLLPWKGEREEG 271 L ++NL LR LAD+L EL + D FV + + +YF P KG G Sbjct: 98 LRKHFNLFANLRPIYLADELKELSPLNINMIPNGIDIIFVRELTGGIYFGQP-KGRSGTG 156
>TFE3_MOUSE (Q64092) Transcription factor E3 (Fragment)| Length = 446 Score = 30.4 bits (67), Expect = 4.7 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 444 NNYNLVHRLRRFQLADQLAELGSWTRRLTDQD 349 +N+NL+ R RRF + D++ ELG+ + D + Sbjct: 222 DNHNLIERRRRFNINDRIKELGTLIPKSNDPE 253
>KKR1_YEAST (P36003) Probable serine/threonine-protein kinase YKL171W (EC| 2.7.11.1) Length = 928 Score = 30.0 bits (66), Expect = 6.1 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +2 Query: 185 SHEISTTHQSSSLNTALQKNRRAHLVKRNPSSRSPFHGKRKYTNLDFLE 331 SH + +Q SS +++ ++ A + P RSPFHG+ K T+ LE Sbjct: 687 SHSLKHLNQPSSSSSSNLFHKPAS--QPQPQHRSPFHGRHKTTDFSNLE 733
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 474 TLNKPSEDLSCTKLEYKDAGSEVFEGIGHLASISGWTARSDRE 602 T N S S T+ + +GSE G+GH S SG TA S R+ Sbjct: 2429 THNSGSSQSSSTQWSH-GSGSEQSSGLGHYGSTSGQTASSTRQ 2470 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 474 TLNKPSEDLSCTKLEYKDAGSEVFEGIGHLASISGWTARSDRE 602 T N S S T+ + +GSE G+GH S SG TA S R+ Sbjct: 2087 THNSGSSQSSSTQWSH-GSGSEQSSGLGHYGSTSGQTASSTRQ 2128 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 474 TLNKPSEDLSCTKLEYKDAGSEVFEGIGHLASISGWTARSDRE 602 T N S S T+ + +GSE G+GH S SG TA S R+ Sbjct: 1739 THNSGSSQSSSTQWSH-GSGSEQSSGLGHYGSTSGQTASSTRQ 1780 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 474 TLNKPSEDLSCTKLEYKDAGSEVFEGIGHLASISGWTARSDRE 602 T N S S T+ + +GSE G+GH S SG TA S R+ Sbjct: 1391 THNSGSSQSSSTQWSH-GSGSEQSSGLGHYGSTSGQTASSTRQ 1432 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 474 TLNKPSEDLSCTKLEYKDAGSEVFEGIGHLASISGWTARSDRE 602 T N S S T+ + +GSE G+GH S SG TA S R+ Sbjct: 1043 THNSGSSQSSSTQWSH-GSGSEQSSGLGHYGSTSGQTASSTRQ 1084 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 474 TLNKPSEDLSCTKLEYKDAGSEVFEGIGHLASISGWTARSDRE 602 T N S S T+ + +GSE G+GH S SG TA S R+ Sbjct: 694 THNSGSSQSSSTQWSH-GSGSEQSSGLGHYGSTSGQTASSTRQ 735
>MSRA2_RHILO (Q98DV6) Peptide methionine sulfoxide reductase msrA 2 (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase 2) (Peptide Met(O) reductase 2) Length = 195 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -2 Query: 608 VFFPIAPCRPTRYGCQVPDSLKHFRTSIFILQLCTRKIFARFV*SLNSEPAYFCIIITTL 429 V+F +A PT+ Q PDS +R++IF ++I ++ L+ Y I+TT+ Sbjct: 80 VYFSVAH-NPTQLNFQGPDSGTQYRSTIFAENDTQKQIAQSYIDQLDKAKLYPAPIVTTI 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,814,235 Number of Sequences: 219361 Number of extensions: 1945115 Number of successful extensions: 5241 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5086 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5239 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
