>RR30_SPIOL (P19954) Plastid-specific 30S ribosomal protein 1, chloroplast|
           precursor (CS-S5) (CS5) (S22) (Ribosomal protein 1)
           (PSRP-1)
          Length = 302

 Score =  107 bits (267), Expect = 2e-23
 Identities = 51/75 (68%), Positives = 64/75 (85%)
 Frame = -2

Query: 442 IGAEDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEG 263
           +  ED++ +  +VVRTK F+M PLT+ EA+EQLENVDHDFYAFRNE+TG++NILYKRKEG
Sbjct: 214 VSVEDDDFI-EEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEG 272

Query: 262 GFGLIIPKQDGHVDK 218
           G+GLIIPK DG  +K
Sbjct: 273 GYGLIIPK-DGKTEK 286

>LRTA_SYNY3 (P74518) Light repressed protein A homolog|
          Length = 191

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 31/59 (52%), Positives = 45/59 (76%)
 Frame = -2

Query: 412 TKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQ 236
           ++V+R K F M P+ +++ALEQL+ VDHDFY FRN+ T E+N++Y R  GG+G+I P Q
Sbjct: 131 SEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQPHQ 189

>LRTA_SYNP2 (P47908) Light repressed protein A|
          Length = 192

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 31/58 (53%), Positives = 44/58 (75%)
 Frame = -2

Query: 412 TKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPK 239
           ++VVR K F M P+T+D+ALEQL+ VDHDFY F N+ T  +N++Y R  GG+G+I P+
Sbjct: 131 SEVVRMKYFAMPPMTIDQALEQLQLVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPR 188

>YVYD_BACSU (P28368) Hypothetical protein yvyD|
          Length = 189

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 24/66 (36%), Positives = 43/66 (65%)
 Frame = -2

Query: 433 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFG 254
           E+EE++   +VR K F + P+  +EA+ Q+  + H+F+ F N +T   N++Y+R +G +G
Sbjct: 126 EEEESL--DIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTNVVYRRNDGKYG 183

Query: 253 LIIPKQ 236
           LI P +
Sbjct: 184 LIEPTE 189

>UA82_DEIRA (Q9RVE7) Protein DR1082|
          Length = 191

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 41/54 (75%)
 Frame = -2

Query: 409 KVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 248
           ++VR K FE+ P++ ++A+ Q+E + HDFY F++ Q G+  ++Y+R++G +GLI
Sbjct: 136 EIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQTGVVYRRRDGHYGLI 188

>YSEA_STACA (P47995) Hypothetical protein in secA 5'region (ORF1) (Fragment)|
          Length = 165

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 19/54 (35%), Positives = 38/54 (70%)
 Frame = -2

Query: 409 KVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 248
           +++R+K F + P+  +EA+ Q++ +  DF+ F + +T   +I+Y+RK+G +GLI
Sbjct: 102 EIIRSKQFSLKPMDSEEAVLQMDLLGTDFFIFNDRETDGTSIVYRRKDGKYGLI 155

>RP5M_BRAJA (P30334) Probable sigma(54) modulation protein (ORF203)|
          Length = 203

 Score = 35.8 bits (81), Expect = 0.074
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = -2

Query: 433 EDEETVLTKVVRTKVF-EMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGF 257
           EDE T  + V+  +    +  L+V EA+ +L+        F++  +G VNI+Y+R +G  
Sbjct: 128 EDEVTGYSPVIIAEATTSLKQLSVSEAVMELDLSGAPCLVFQHGSSGRVNIIYRRADGNV 187

Query: 256 GLIIP---KQDG 230
           G + P   K DG
Sbjct: 188 GWVDPPGGKADG 199

>RP5M_RHIME (P17265) Probable sigma(54) modulation protein|
          Length = 190

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 433 EDEET---VLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEG 263
           EDEE        +V     ++  ++V  A+  L+  D     FR+    ++NI+Y+R +G
Sbjct: 119 EDEEVPDDYAPTIVAETTKQLRTMSVANAVMALDMTDEPVLMFRSPGKDDLNIVYRRNDG 178

Query: 262 GFGLI 248
             G I
Sbjct: 179 NIGWI 183

>HIS6_ANAVT (Q3MEF5) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 257

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 433 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENV 335
           ED +T++  V RT      PLTV   ++ LENV
Sbjct: 57  EDRDTIIDVVYRTAEQVFIPLTVGGGIQSLENV 89

>HIS6_ANASP (Q8YT31) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 259

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 433 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENV 335
           ED +T++  V RT      PLTV   ++ LENV
Sbjct: 57  EDRDTIIDVVYRTAEQVFIPLTVGGGIQSLENV 89

>TRPG_CRYNE (Q5KC22) Anthranilate synthase component 2 (EC 4.1.3.27)|
           (Anthranilate synthase component II) [Includes:
           Glutamine amidotransferase; Indole-3-glycerol phosphate
           synthase (EC 4.1.1.48) (IGPS);
           N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3
          Length = 752

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = -2

Query: 346 LENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQDGHVDKATVNAKEHPVAG*PRPP 167
           L +V  + Y  RN++     I  K  EG F       DG +++  ++    P  G PR  
Sbjct: 21  LASVGGNPYVVRNDK-----ITLKEIEGMFS------DGELERIVIS----PGPGHPRTD 65

Query: 166 SITSCSCISWSVFSLMMVGVC 104
           S  S   I+W +  L ++GVC
Sbjct: 66  SGVSRDVIAWGMGKLPILGVC 86

>MUS81_XENTR (Q640B4) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 612

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
 Frame = -2

Query: 379 APLTVDEALEQLENVDHDFYAFRNEQTG---EVNILYKRKEGGFGLII--------PKQD 233
           +PL++  ALE  E    D    + ++TG   +   + +R+ GG+ +++        P   
Sbjct: 115 SPLSIPHALEPPEQESQDLSPSKKKKTGGKKQREYVPQRRSGGYAVLLTLYRDTKSPSSR 174

Query: 232 GHVDKATVNAKEHPV 188
           G++ KA +  +  P+
Sbjct: 175 GYMTKAELQKEAQPL 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,842,980
Number of Sequences: 219361
Number of extensions: 791233
Number of successful extensions: 2361
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2359
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)