Clone Name | rbasd11m06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197371.1| Oryza sativa (japonica cultivar-group) putative GTPase activating protein (OSJNBa0076F20.7), mRNA Length = 1855 Score = 498 bits (251), Expect = e-137 Identities = 471/543 (86%), Gaps = 1/543 (0%) Strand = Plus / Minus Query: 150 tcgtccaggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatc 209 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 1718 tcgtccaggagcttccaaatgtccagctgcccagccatgctgttacactcccttatgatc 1659 Query: 210 tcatccatgctgctatagctctctattatcagtttcctcttctccagtacactggctgca 269 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 1658 tcatccatgctgctatagctctctattatcagtttcctcttctgcagcacgctggccgca 1599 Query: 270 attgcatacagcagcaggtcatctgtcggaggggctccaagccgaagttttccccaggac 329 |||||||| || |||| |||||| || ||||||||||| | ||| ||||| ||| | || Sbjct: 1598 attgcatatagtagcaagtcatcagttggaggggctcctaaccgcagtttccccaacgat 1539 Query: 330 gatcttgtgatcccagcacgcctcgctgcctgatcggcccacatcacctcccacaggctg 389 ||| ||| || |||||||| | |||||||||||||||||||| |||||||| || | | Sbjct: 1538 gattttgcaattccagcacggtttgctgcctgatcggcccacataacctcccatagacag 1479 Query: 390 agggtctgctcgaaggtgagttccctccggaacatcacaaccaccattctataaacgaaa 449 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct: 1478 agggtctgctcaaaggtcagctcccttcggaacatgaccaccaccattctgtaaacaaag 1419 Query: 450 aagcagtctgcggcttcgagcatctccaggtgcctgtaaagatggaagtccttggttttt 509 |||||||| | |||| ||||||||||| || ||||||||||||||||||||| ||| Sbjct: 1418 aagcagtcctcagcttggagcatctccaaatgtctgtaaagatggaagtccttgtatttg 1359 Query: 510 attatcttggagaccatgttgagttgcctgcggatacccacttcgtcgagtctgaagttg 569 |||||| ||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct: 1358 attatcctggctaccatgttcagttgcctgcgaatgcccacttcatcaagcctgaaatta 1299 Query: 570 tggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtcttcctccagc 629 || |||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| Sbjct: 1298 tgacgggctttcctcataaaaccagcaaagcaccagaaggcttcattgtcatcttccagt 1239 Query: 630 acagcaagggagaggtgcaaggaggtcgctcatgccctggcaatagccaatttctgggtc 689 || |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1238 acggcaa-gtagaggtgcaagaaggtcgctcatgccctggcaatatccaatttctgggtc 1180 Query: 690 ata 692 ||| Sbjct: 1179 ata 1177
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 498 bits (251), Expect = e-137 Identities = 471/543 (86%), Gaps = 1/543 (0%) Strand = Plus / Minus Query: 150 tcgtccaggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatc 209 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 136730 tcgtccaggagcttccaaatgtccagctgcccagccatgctgttacactcccttatgatc 136671 Query: 210 tcatccatgctgctatagctctctattatcagtttcctcttctccagtacactggctgca 269 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 136670 tcatccatgctgctatagctctctattatcagtttcctcttctgcagcacgctggccgca 136611 Query: 270 attgcatacagcagcaggtcatctgtcggaggggctccaagccgaagttttccccaggac 329 |||||||| || |||| |||||| || ||||||||||| | ||| ||||| ||| | || Sbjct: 136610 attgcatatagtagcaagtcatcagttggaggggctcctaaccgcagtttccccaacgat 136551 Query: 330 gatcttgtgatcccagcacgcctcgctgcctgatcggcccacatcacctcccacaggctg 389 ||| ||| || |||||||| | |||||||||||||||||||| |||||||| || | | Sbjct: 136550 gattttgcaattccagcacggtttgctgcctgatcggcccacataacctcccatagacag 136491 Query: 390 agggtctgctcgaaggtgagttccctccggaacatcacaaccaccattctataaacgaaa 449 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct: 136490 agggtctgctcaaaggtcagctcccttcggaacatgaccaccaccattctgtaaacaaag 136431 Query: 450 aagcagtctgcggcttcgagcatctccaggtgcctgtaaagatggaagtccttggttttt 509 |||||||| | |||| ||||||||||| || ||||||||||||||||||||| ||| Sbjct: 136430 aagcagtcctcagcttggagcatctccaaatgtctgtaaagatggaagtccttgtatttg 136371 Query: 510 attatcttggagaccatgttgagttgcctgcggatacccacttcgtcgagtctgaagttg 569 |||||| ||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct: 136370 attatcctggctaccatgttcagttgcctgcgaatgcccacttcatcaagcctgaaatta 136311 Query: 570 tggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtcttcctccagc 629 || |||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| Sbjct: 136310 tgacgggctttcctcataaaaccagcaaagcaccagaaggcttcattgtcatcttccagt 136251 Query: 630 acagcaagggagaggtgcaaggaggtcgctcatgccctggcaatagccaatttctgggtc 689 || |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 136250 acggcaa-gtagaggtgcaagaaggtcgctcatgccctggcaatatccaatttctgggtc 136192 Query: 690 ata 692 ||| Sbjct: 136191 ata 136189
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 498 bits (251), Expect = e-137 Identities = 471/543 (86%), Gaps = 1/543 (0%) Strand = Plus / Minus Query: 150 tcgtccaggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatc 209 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 19508864 tcgtccaggagcttccaaatgtccagctgcccagccatgctgttacactcccttatgatc 19508805 Query: 210 tcatccatgctgctatagctctctattatcagtttcctcttctccagtacactggctgca 269 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 19508804 tcatccatgctgctatagctctctattatcagtttcctcttctgcagcacgctggccgca 19508745 Query: 270 attgcatacagcagcaggtcatctgtcggaggggctccaagccgaagttttccccaggac 329 |||||||| || |||| |||||| || ||||||||||| | ||| ||||| ||| | || Sbjct: 19508744 attgcatatagtagcaagtcatcagttggaggggctcctaaccgcagtttccccaacgat 19508685 Query: 330 gatcttgtgatcccagcacgcctcgctgcctgatcggcccacatcacctcccacaggctg 389 ||| ||| || |||||||| | |||||||||||||||||||| |||||||| || | | Sbjct: 19508684 gattttgcaattccagcacggtttgctgcctgatcggcccacataacctcccatagacag 19508625 Query: 390 agggtctgctcgaaggtgagttccctccggaacatcacaaccaccattctataaacgaaa 449 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct: 19508624 agggtctgctcaaaggtcagctcccttcggaacatgaccaccaccattctgtaaacaaag 19508565 Query: 450 aagcagtctgcggcttcgagcatctccaggtgcctgtaaagatggaagtccttggttttt 509 |||||||| | |||| ||||||||||| || ||||||||||||||||||||| ||| Sbjct: 19508564 aagcagtcctcagcttggagcatctccaaatgtctgtaaagatggaagtccttgtatttg 19508505 Query: 510 attatcttggagaccatgttgagttgcctgcggatacccacttcgtcgagtctgaagttg 569 |||||| ||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct: 19508504 attatcctggctaccatgttcagttgcctgcgaatgcccacttcatcaagcctgaaatta 19508445 Query: 570 tggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtcttcctccagc 629 || |||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| Sbjct: 19508444 tgacgggctttcctcataaaaccagcaaagcaccagaaggcttcattgtcatcttccagt 19508385 Query: 630 acagcaagggagaggtgcaaggaggtcgctcatgccctggcaatagccaatttctgggtc 689 || |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 19508384 acggcaa-gtagaggtgcaagaaggtcgctcatgccctggcaatatccaatttctgggtc 19508326 Query: 690 ata 692 ||| Sbjct: 19508325 ata 19508323
>dbj|AK099843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108O08, full insert sequence Length = 1981 Score = 498 bits (251), Expect = e-137 Identities = 471/543 (86%), Gaps = 1/543 (0%) Strand = Plus / Minus Query: 150 tcgtccaggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatc 209 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 1844 tcgtccaggagcttccaaatgtccagctgcccagccatgctgttacactcccttatgatc 1785 Query: 210 tcatccatgctgctatagctctctattatcagtttcctcttctccagtacactggctgca 269 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 1784 tcatccatgctgctatagctctctattatcagtttcctcttctgcagcacgctggccgca 1725 Query: 270 attgcatacagcagcaggtcatctgtcggaggggctccaagccgaagttttccccaggac 329 |||||||| || |||| |||||| || ||||||||||| | ||| ||||| ||| | || Sbjct: 1724 attgcatatagtagcaagtcatcagttggaggggctcctaaccgcagtttccccaacgat 1665 Query: 330 gatcttgtgatcccagcacgcctcgctgcctgatcggcccacatcacctcccacaggctg 389 ||| ||| || |||||||| | |||||||||||||||||||| |||||||| || | | Sbjct: 1664 gattttgcaattccagcacggtttgctgcctgatcggcccacataacctcccatagacag 1605 Query: 390 agggtctgctcgaaggtgagttccctccggaacatcacaaccaccattctataaacgaaa 449 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct: 1604 agggtctgctcaaaggtcagctcccttcggaacatgaccaccaccattctgtaaacaaag 1545 Query: 450 aagcagtctgcggcttcgagcatctccaggtgcctgtaaagatggaagtccttggttttt 509 |||||||| | |||| ||||||||||| || ||||||||||||||||||||| ||| Sbjct: 1544 aagcagtcctcagcttggagcatctccaaatgtctgtaaagatggaagtccttgtatttg 1485 Query: 510 attatcttggagaccatgttgagttgcctgcggatacccacttcgtcgagtctgaagttg 569 |||||| ||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct: 1484 attatcctggctaccatgttcagttgcctgcgaatgcccacttcatcaagcctgaaatta 1425 Query: 570 tggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtcttcctccagc 629 || |||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| Sbjct: 1424 tgacgggctttcctcataaaaccagcaaagcaccagaaggcttcattgtcatcttccagt 1365 Query: 630 acagcaagggagaggtgcaaggaggtcgctcatgccctggcaatagccaatttctgggtc 689 || |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1364 acggcaa-gtagaggtgcaagaaggtcgctcatgccctggcaatatccaatttctgggtc 1306 Query: 690 ata 692 ||| Sbjct: 1305 ata 1303
>dbj|AK068787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164O13, full insert sequence Length = 2207 Score = 498 bits (251), Expect = e-137 Identities = 471/543 (86%), Gaps = 1/543 (0%) Strand = Plus / Minus Query: 150 tcgtccaggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatc 209 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 1843 tcgtccaggagcttccaaatgtccagctgcccagccatgctgttacactcccttatgatc 1784 Query: 210 tcatccatgctgctatagctctctattatcagtttcctcttctccagtacactggctgca 269 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 1783 tcatccatgctgctatagctctctattatcagtttcctcttctgcagcacgctggccgca 1724 Query: 270 attgcatacagcagcaggtcatctgtcggaggggctccaagccgaagttttccccaggac 329 |||||||| || |||| |||||| || ||||||||||| | ||| ||||| ||| | || Sbjct: 1723 attgcatatagtagcaagtcatcagttggaggggctcctaaccgcagtttccccaacgat 1664 Query: 330 gatcttgtgatcccagcacgcctcgctgcctgatcggcccacatcacctcccacaggctg 389 ||| ||| || |||||||| | |||||||||||||||||||| |||||||| || | | Sbjct: 1663 gattttgcaattccagcacggtttgctgcctgatcggcccacataacctcccatagacag 1604 Query: 390 agggtctgctcgaaggtgagttccctccggaacatcacaaccaccattctataaacgaaa 449 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct: 1603 agggtctgctcaaaggtcagctcccttcggaacatgaccaccaccattctgtaaacaaag 1544 Query: 450 aagcagtctgcggcttcgagcatctccaggtgcctgtaaagatggaagtccttggttttt 509 |||||||| | |||| ||||||||||| || ||||||||||||||||||||| ||| Sbjct: 1543 aagcagtcctcagcttggagcatctccaaatgtctgtaaagatggaagtccttgtatttg 1484 Query: 510 attatcttggagaccatgttgagttgcctgcggatacccacttcgtcgagtctgaagttg 569 |||||| ||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct: 1483 attatcctggctaccatgttcagttgcctgcgaatgcccacttcatcaagcctgaaatta 1424 Query: 570 tggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtcttcctccagc 629 || |||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| Sbjct: 1423 tgacgggctttcctcataaaaccagcaaagcaccagaaggcttcattgtcatcttccagt 1364 Query: 630 acagcaagggagaggtgcaaggaggtcgctcatgccctggcaatagccaatttctgggtc 689 || |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1363 acggcaa-gtagaggtgcaagaaggtcgctcatgccctggcaatatccaatttctgggtc 1305 Query: 690 ata 692 ||| Sbjct: 1304 ata 1302
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 498 bits (251), Expect = e-137 Identities = 471/543 (86%), Gaps = 1/543 (0%) Strand = Plus / Minus Query: 150 tcgtccaggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatc 209 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct: 19520140 tcgtccaggagcttccaaatgtccagctgcccagccatgctgttacactcccttatgatc 19520081 Query: 210 tcatccatgctgctatagctctctattatcagtttcctcttctccagtacactggctgca 269 ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 19520080 tcatccatgctgctatagctctctattatcagtttcctcttctgcagcacgctggccgca 19520021 Query: 270 attgcatacagcagcaggtcatctgtcggaggggctccaagccgaagttttccccaggac 329 |||||||| || |||| |||||| || ||||||||||| | ||| ||||| ||| | || Sbjct: 19520020 attgcatatagtagcaagtcatcagttggaggggctcctaaccgcagtttccccaacgat 19519961 Query: 330 gatcttgtgatcccagcacgcctcgctgcctgatcggcccacatcacctcccacaggctg 389 ||| ||| || |||||||| | |||||||||||||||||||| |||||||| || | | Sbjct: 19519960 gattttgcaattccagcacggtttgctgcctgatcggcccacataacctcccatagacag 19519901 Query: 390 agggtctgctcgaaggtgagttccctccggaacatcacaaccaccattctataaacgaaa 449 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct: 19519900 agggtctgctcaaaggtcagctcccttcggaacatgaccaccaccattctgtaaacaaag 19519841 Query: 450 aagcagtctgcggcttcgagcatctccaggtgcctgtaaagatggaagtccttggttttt 509 |||||||| | |||| ||||||||||| || ||||||||||||||||||||| ||| Sbjct: 19519840 aagcagtcctcagcttggagcatctccaaatgtctgtaaagatggaagtccttgtatttg 19519781 Query: 510 attatcttggagaccatgttgagttgcctgcggatacccacttcgtcgagtctgaagttg 569 |||||| ||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct: 19519780 attatcctggctaccatgttcagttgcctgcgaatgcccacttcatcaagcctgaaatta 19519721 Query: 570 tggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtcttcctccagc 629 || |||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| Sbjct: 19519720 tgacgggctttcctcataaaaccagcaaagcaccagaaggcttcattgtcatcttccagt 19519661 Query: 630 acagcaagggagaggtgcaaggaggtcgctcatgccctggcaatagccaatttctgggtc 689 || |||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 19519660 acggcaa-gtagaggtgcaagaaggtcgctcatgccctggcaatatccaatttctgggtc 19519602 Query: 690 ata 692 ||| Sbjct: 19519601 ata 19519599
>gb|AY105833.1| Zea mays PCO097323 mRNA sequence Length = 778 Score = 406 bits (205), Expect = e-110 Identities = 418/489 (85%) Strand = Plus / Minus Query: 104 cagctactcgatcctgtcttgtacggtcaccactaaatcatgggcgtcgtccaggagctt 163 ||||||||||||||| || || | ||||||||| | ||| || || |||||||||||||| Sbjct: 499 cagctactcgatcctatcgtgaagggtcaccacaagatcgtgcgcatcgtccaggagctt 440 Query: 164 ccaaatgtccagctgcccggccatgctgttacagtccctaatgatctcatccatgctgct 223 |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| | Sbjct: 439 ccaaatgtccagctgcccagccatgctgttacactcccttatgatctcatccatgctgtt 380 Query: 224 atagctctctattatcagtttcctcttctccagtacactggctgcaattgcatacagcag 283 ||||| |||||||||||||||| ||||| || ||||| || ||||| |||||||| | Sbjct: 379 gtagctttctattatcagtttccgcttctgcaacacactagcagcaatcgcatacagtaa 320 Query: 284 caggtcatctgtcggaggggctccaagccgaagttttccccaggacgatcttgtgatccc 343 ||| |||||||| ||||| ||||| | | | | ||| | |||||| || ||| |||| | Sbjct: 319 cagatcatctgttggaggcgctcccaactgcaatttacgccaggatgagtttgcgatctc 260 Query: 344 agcacgcctcgctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaa 403 || || | ||||||||||| ||||||||||||||||| || | |||||||||||||| Sbjct: 259 ggcgcggtttgctgcctgatcagcccacatcacctcccagagacatagggtctgctcgaa 200 Query: 404 ggtgagttccctccggaacatcacaaccaccattctataaacgaaaaagcagtctgcggc 463 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || Sbjct: 199 ggtgagttccctccggaacatcacaaccaccattctgtaaacgaaaaagcagtcttcagc 140 Query: 464 ttcgagcatctccaggtgcctgtaaagatggaagtccttggtttttattatcttggagac 523 || ||||||||||| || ||||| ||||||||||||||| ||| |||||| ||| || Sbjct: 139 ttggagcatctccaaatgtctgtagagatggaagtccttgtatttgattatcctggcaac 80 Query: 524 catgttgagttgcctgcggatacccacttcgtcgagtctgaagttgtggcgggctttcct 583 ||| |||||||||| ||| ||||||||||| || || || |||||||||||||||||||| Sbjct: 79 catattgagttgccggcgtatacccacttcatcaagcctaaagttgtggcgggctttcct 20 Query: 584 catgaaacc 592 ||| ||||| Sbjct: 19 cataaaacc 11
>ref|XM_483641.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2212 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 174 agctgcccggccatgctgttacagtccctaatgatctcatccatgctgctatagctctct 233 |||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||| Sbjct: 1820 agctgcccagccatgctgttgcactccctgagtatctcatccatgctgctatacctctca 1761 Query: 234 attatcagtttcctcttctccagtacactggctgcaattgcatacagcagcaggtcatct 293 ||||| || |||||||||| || |||| ||| ||||| ||||| |||| || ||||| Sbjct: 1760 attatgagcttcctcttctgtaggacacaggcagcaatggcatagagcaacaaatcatca 1701 Query: 294 gtcggaggggc 304 || |||||||| Sbjct: 1700 gttggaggggc 1690 Score = 63.9 bits (32), Expect = 7e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 354 gctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaaggtgagttcc 413 ||||| ||||| |||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct: 1640 gctgcttgatcagcccacatcacctcccacagacacagggtctgctcaaaagtgagctcc 1581 Query: 414 ctccggaacatcacaaccaccattctataaacgaaaaagcagtc 457 || | ||| | || ||||||||||| || || || |||||||| Sbjct: 1580 cttctgaagagaaccaccaccattctgtatacaaagaagcagtc 1537 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 555 tcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttca 614 ||||| ||||||||||| | |||||||||||||| || |||| ||||| || |||||| Sbjct: 1439 tcgagcctgaagttgtgcctcgctttcctcatgaagcccacaaaacaccaaaatgcttca 1380 Query: 615 tcgtcttcctcca 627 | |||||||||| Sbjct: 1379 tgatcttcctcca 1367
>ref|XM_507320.1| PREDICTED Oryza sativa (japonica cultivar-group), P0544G09.9 mRNA Length = 2218 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 174 agctgcccggccatgctgttacagtccctaatgatctcatccatgctgctatagctctct 233 |||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||| Sbjct: 1821 agctgcccagccatgctgttgcactccctgagtatctcatccatgctgctatacctctca 1762 Query: 234 attatcagtttcctcttctccagtacactggctgcaattgcatacagcagcaggtcatct 293 ||||| || |||||||||| || |||| ||| ||||| ||||| |||| || ||||| Sbjct: 1761 attatgagcttcctcttctgtaggacacaggcagcaatggcatagagcaacaaatcatca 1702 Query: 294 gtcggaggggc 304 || |||||||| Sbjct: 1701 gttggaggggc 1691 Score = 63.9 bits (32), Expect = 7e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 354 gctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaaggtgagttcc 413 ||||| ||||| |||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct: 1641 gctgcttgatcagcccacatcacctcccacagacacagggtctgctcaaaagtgagctcc 1582 Query: 414 ctccggaacatcacaaccaccattctataaacgaaaaagcagtc 457 || | ||| | || ||||||||||| || || || |||||||| Sbjct: 1581 cttctgaagagaaccaccaccattctgtatacaaagaagcagtc 1538 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 555 tcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttca 614 ||||| ||||||||||| | |||||||||||||| || |||| ||||| || |||||| Sbjct: 1440 tcgagcctgaagttgtgcctcgctttcctcatgaagcccacaaaacaccaaaatgcttca 1381 Query: 615 tcgtcttcctcca 627 | |||||||||| Sbjct: 1380 tgatcttcctcca 1368
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 174 agctgcccggccatgctgttacagtccctaatgatctcatccatgctgctatagctctct 233 |||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||| Sbjct: 27406241 agctgcccagccatgctgttgcactccctgagtatctcatccatgctgctatacctctca 27406182 Query: 234 attatcagtttcctcttctccagtacactggctgcaattgcatacagcagcaggtcatct 293 ||||| || |||||||||| || |||| ||| ||||| ||||| |||| || ||||| Sbjct: 27406181 attatgagcttcctcttctgtaggacacaggcagcaatggcatagagcaacaaatcatca 27406122 Query: 294 gtcggaggggc 304 || |||||||| Sbjct: 27406121 gttggaggggc 27406111 Score = 63.9 bits (32), Expect = 7e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 354 gctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaaggtgagttcc 413 ||||| ||||| |||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct: 27406061 gctgcttgatcagcccacatcacctcccacagacacagggtctgctcaaaagtgagctcc 27406002 Query: 414 ctccggaacatcacaaccaccattctataaacgaaaaagcagtc 457 || | ||| | || ||||||||||| || || || |||||||| Sbjct: 27406001 cttctgaagagaaccaccaccattctgtatacaaagaagcagtc 27405958 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 555 tcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttca 614 ||||| ||||||||||| | |||||||||||||| || |||| ||||| || |||||| Sbjct: 27405860 tcgagcctgaagttgtgcctcgctttcctcatgaagcccacaaaacaccaaaatgcttca 27405801 Query: 615 tcgtcttcctcca 627 | |||||||||| Sbjct: 27405800 tgatcttcctcca 27405788
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 174 agctgcccggccatgctgttacagtccctaatgatctcatccatgctgctatagctctct 233 |||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||| Sbjct: 33036 agctgcccagccatgctgttgcactccctgagtatctcatccatgctgctatacctctca 32977 Query: 234 attatcagtttcctcttctccagtacactggctgcaattgcatacagcagcaggtcatct 293 ||||| || |||||||||| || |||| ||| ||||| ||||| |||| || ||||| Sbjct: 32976 attatgagcttcctcttctgtaggacacaggcagcaatggcatagagcaacaaatcatca 32917 Query: 294 gtcggaggggc 304 || |||||||| Sbjct: 32916 gttggaggggc 32906 Score = 63.9 bits (32), Expect = 7e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 354 gctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaaggtgagttcc 413 ||||| ||||| |||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct: 32856 gctgcttgatcagcccacatcacctcccacagacacagggtctgctcaaaagtgagctcc 32797 Query: 414 ctccggaacatcacaaccaccattctataaacgaaaaagcagtc 457 || | ||| | || ||||||||||| || || || |||||||| Sbjct: 32796 cttctgaagagaaccaccaccattctgtatacaaagaagcagtc 32753 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 555 tcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttca 614 ||||| ||||||||||| | |||||||||||||| || |||| ||||| || |||||| Sbjct: 32655 tcgagcctgaagttgtgcctcgctttcctcatgaagcccacaaaacaccaaaatgcttca 32596 Query: 615 tcgtcttcctcca 627 | |||||||||| Sbjct: 32595 tgatcttcctcca 32583
>dbj|AK119577.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B08, full insert sequence Length = 2212 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 174 agctgcccggccatgctgttacagtccctaatgatctcatccatgctgctatagctctct 233 |||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||| Sbjct: 1820 agctgcccagccatgctgttgcactccctgagtatctcatccatgctgctatacctctca 1761 Query: 234 attatcagtttcctcttctccagtacactggctgcaattgcatacagcagcaggtcatct 293 ||||| || |||||||||| || |||| ||| ||||| ||||| |||| || ||||| Sbjct: 1760 attatgagcttcctcttctgtaggacacaggcagcaatggcatagagcaacaaatcatca 1701 Query: 294 gtcggaggggc 304 || |||||||| Sbjct: 1700 gttggaggggc 1690 Score = 63.9 bits (32), Expect = 7e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 354 gctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaaggtgagttcc 413 ||||| ||||| |||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct: 1640 gctgcttgatcagcccacatcacctcccacagacacagggtctgctcaaaagtgagctcc 1581 Query: 414 ctccggaacatcacaaccaccattctataaacgaaaaagcagtc 457 || | ||| | || ||||||||||| || || || |||||||| Sbjct: 1580 cttctgaagagaaccaccaccattctgtatacaaagaagcagtc 1537 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 555 tcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttca 614 ||||| ||||||||||| | |||||||||||||| || |||| ||||| || |||||| Sbjct: 1439 tcgagcctgaagttgtgcctcgctttcctcatgaagcccacaaaacaccaaaatgcttca 1380 Query: 615 tcgtcttcctcca 627 | |||||||||| Sbjct: 1379 tgatcttcctcca 1367
>ref|NM_114795.2| Arabidopsis thaliana unknown protein AT3G49350 mRNA, complete cds Length = 2478 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 419 gaacatcacaaccaccattctataaacgaaaaagcagtctgcggcttcgagcatctccag 478 |||||||||||| |||||||| || || || || |||||| | |||| ||| |||| || Sbjct: 1684 gaacatcacaacaaccattctgtatacaaagaaacagtcttcagcttggagtttctcaag 1625 Query: 479 gtgcctgtaaagatggaagtccttggtttttattatcttggagaccatgttgagttgcct 538 |||||| ||||| || |||| || | ||| |||||||| ||||| ||||||||||| || Sbjct: 1624 gtgcctataaagctgagagtctttagatttgattatctttgagactatgttgagttgtct 1565 Query: 539 gcggatacccacttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaa 598 | ||| || || ||||| |||||||| ||||| || |||||| ||||||| ||| | || Sbjct: 1564 tctgattccaacctcgtcaagtctgaaattgtgacgagctttcttcatgaacccgacgaa 1505 Query: 599 gcaccagaaggcttcat 615 ||||| ||| |||||| Sbjct: 1504 acaccaaaagacttcat 1488
>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15 Length = 129757 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Plus Query: 419 gaacatcacaaccaccattctataaacgaaaaagcagtctgcggcttcgagcatctccag 478 |||||||||||| |||||||| || || || || |||||| | |||| ||| |||| || Sbjct: 100644 gaacatcacaacaaccattctgtatacaaagaaacagtcttcagcttggagtttctcaag 100703 Query: 479 gtgcctgtaaagatggaagtccttggtttttattatcttggagaccatgttgagttgcct 538 |||||| ||||| || |||| || | ||| |||||||| ||||| ||||||||||| || Sbjct: 100704 gtgcctataaagctgagagtctttagatttgattatctttgagactatgttgagttgtct 100763 Query: 539 gcggatacccacttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaa 598 | ||| || || ||||| |||||||| ||||| || |||||| ||||||| ||| | || Sbjct: 100764 tctgattccaacctcgtcaagtctgaaattgtgacgagctttcttcatgaacccgacgaa 100823 Query: 599 gcaccagaaggcttcat 615 ||||| ||| |||||| Sbjct: 100824 acaccaaaagacttcat 100840
>gb|BT023442.1| Arabidopsis thaliana At3g49350 gene, complete cds Length = 2116 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 419 gaacatcacaaccaccattctataaacgaaaaagcagtctgcggcttcgagcatctccag 478 |||||||||||| |||||||| || || || || |||||| | |||| ||| |||| || Sbjct: 1608 gaacatcacaacaaccattctgtatacaaagaaacagtcttcagcttggagtttctcaag 1549 Query: 479 gtgcctgtaaagatggaagtccttggtttttattatcttggagaccatgttgagttgcct 538 |||||| ||||| || |||| || | ||| |||||||| ||||| ||||||||||| || Sbjct: 1548 gtgcctataaagctgagagtctttagatttgattatctttgagactatgttgagttgtct 1489 Query: 539 gcggatacccacttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaa 598 | ||| || || ||||| |||||||| ||||| || |||||| ||||||| ||| | || Sbjct: 1488 tctgattccaacctcgtcaagtctgaaattgtgacgagctttcttcatgaacccgacgaa 1429 Query: 599 gcaccagaaggcttcat 615 ||||| ||| |||||| Sbjct: 1428 acaccaaaagacttcat 1412
>gb|AC012329.5|AC012329 Arabidopsis thaliana chromosome 1 BAC T1G12 genomic sequence, complete sequence Length = 80367 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Plus Query: 419 gaacatcacaaccaccattctataaacgaaaaagcagtctgcggcttcgagcatctccag 478 |||||||||||| |||||||| || || || || |||||| | |||| ||| |||| || Sbjct: 18779 gaacatcacaacaaccattctgtatacaaagaaacagtcttcagcttggagtttctcaag 18838 Query: 479 gtgcctgtaaagatggaagtccttggtttttattatcttggagaccatgttgagttgcct 538 |||||| ||||| || |||| || | ||| |||||||| ||||| ||||||||||| || Sbjct: 18839 gtgcctataaagctgagagtctttagatttgattatctttgagactatgttgagttgtct 18898 Query: 539 gcggatacccacttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaa 598 | ||| || || ||||| |||||||| ||||| || |||||| ||||||| ||| | || Sbjct: 18899 tctgattccaacctcgtcaagtctgaaattgtgacgagctttcttcatgaacccgacgaa 18958 Query: 599 gcaccagaaggcttcat 615 ||||| ||| |||||| Sbjct: 18959 acaccaaaagacttcat 18975
>dbj|AK101130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026C08, full insert sequence Length = 2217 Score = 81.8 bits (41), Expect = 3e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 174 agctgcccggccatgctgttacagtccctaatgatctcatccatgctgctatagctctct 233 |||||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||| Sbjct: 1821 agctgcccagccatgctgttgcactccctgagtatctcatccatgctgctatacctctca 1762 Query: 234 attatcagtttcctcttctccagtacactggctgcaattgcatacagca 282 ||||| || |||||||||| || |||| ||| ||||| ||||| |||| Sbjct: 1761 attatgagcttcctcttctgtaggacacaggcagcaatggcatagagca 1713 Score = 63.9 bits (32), Expect = 7e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 354 gctgcctgatcggcccacatcacctcccacaggctgagggtctgctcgaaggtgagttcc 413 ||||| ||||| |||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct: 1641 gctgcttgatcagcccacatcacctcccacagacacagggtctgctcaaaagtgagctcc 1582 Query: 414 ctccggaacatcacaaccaccattctataaacgaaaaagcagtc 457 || | ||| | || ||||||||||| || || || |||||||| Sbjct: 1581 cttctgaagagaaccaccaccattctgtatacaaagaagcagtc 1538 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 555 tcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttca 614 ||||| ||||||||||| | |||||||||||||| || |||| ||||| || |||||| Sbjct: 1440 tcgagcctgaagttgtgcctcgctttcctcatgaagcccacaaaacaccaaaatgcttca 1381 Query: 615 tcgtcttcctcca 627 | |||||||||| Sbjct: 1380 tgatcttcctcca 1368
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 561 ctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtct 620 ||||||||||| | |||||||||||||||||| |||||||||| || ||||||||||| Sbjct: 20415814 ctgaagttgtgcctggctttcctcatgaaacccacaaagcaccaaaatgcttcatcgtcc 20415873 Query: 621 tcctccagcacagcaa 636 ||||||| ||| |||| Sbjct: 20415874 tcctccatcactgcaa 20415889
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 561 ctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtct 620 ||||||||||| | |||||||||||||||||| |||||||||| || ||||||||||| Sbjct: 43953 ctgaagttgtgcctggctttcctcatgaaacccacaaagcaccaaaatgcttcatcgtcc 44012 Query: 621 tcctccagcacagcaa 636 ||||||| ||| |||| Sbjct: 44013 tcctccatcactgcaa 44028
>dbj|AK070219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043K12, full insert sequence Length = 2098 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 561 ctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaaggcttcatcgtct 620 ||||||||||| | |||||||||||||||||| |||||||||| || ||||||||||| Sbjct: 1302 ctgaagttgtgcctggctttcctcatgaaacccacaaagcaccaaaatgcttcatcgtcc 1243 Query: 621 tcctccagcacagcaa 636 ||||||| ||| |||| Sbjct: 1242 tcctccatcactgcaa 1227
>gb|AC141323.9| Medicago truncatula clone mth2-6a23, complete sequence Length = 132894 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 185 catgctgttacagtccctaatgatctcatccatgctgctata 226 |||||| || || ||||||||||||||||||||||||||||| Sbjct: 15768 catgctattgcattccctaatgatctcatccatgctgctata 15809 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Plus Query: 408 agttccctccggaacatcacaaccaccattctataaacgaaaaagca 454 ||||||||||| |||| || |||||||| |||||||| |||||||| Sbjct: 15991 agttccctccgaaacaataccaccaccatcctataaacaaaaaagca 16037 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 652 aggtcgctcatgccctggcaatagccaatttctgggtcata 692 ||||| ||||| |||||||| ||||||||||| | |||||| Sbjct: 16234 aggtcactcataccctggcagtagccaatttcagagtcata 16274
>gb|AC149805.12| Medicago truncatula clone mth2-146o17, complete sequence Length = 89758 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 185 catgctgttacagtccctaatgatctcatccatgctgctata 226 |||||| || || ||||||||||||||||||||||||||||| Sbjct: 47916 catgctattgcattccctaatgatctcatccatgctgctata 47957 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Plus Query: 408 agttccctccggaacatcacaaccaccattctataaacgaaaaagca 454 ||||||||||| |||| || |||||||| |||||||| |||||||| Sbjct: 48139 agttccctccgaaacaataccaccaccatcctataaacaaaaaagca 48185 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 652 aggtcgctcatgccctggcaatagccaatttctgggtcata 692 ||||| ||||| |||||||| ||||||||||| | |||||| Sbjct: 48382 aggtcactcataccctggcagtagccaatttcagagtcata 48422
>gb|AY111774.1| Zea mays CL27690_1 mRNA sequence Length = 538 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 156 aggagcttccaaatgtccagctgcccggccatgctgttacagtccctaatgatctcatcc 215 ||||||||||| | || ||||||||||||||||| ||||| |||| | ||||||||| Sbjct: 349 aggagcttccagacatctagctgcccggccatgctattacactcccgcagtatctcatcc 408 Query: 216 atgctgctatagctctctattatcagtttcctc 248 ||||| || || |||| |||||||| |||||| Sbjct: 409 atgctactgtacttctcgattatcagcttcctc 441
>ref|NM_124737.2| Arabidopsis thaliana unknown protein AT5G53570 mRNA, complete cds Length = 2367 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Minus Query: 550 cttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaa 607 ||||||| || ||||| ||||| || |||||| |||||||||| ||||||||||||| Sbjct: 1569 cttcgtcaagcctgaaattgtgccgagctttcttcatgaaaccaacaaagcaccagaa 1512
>gb|BT013484.1| Lycopersicon esculentum clone 132167F, mRNA sequence Length = 2473 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Minus Query: 655 tcgctcatgccctggcaatagccaatttctgggtcata 692 |||||||| ||||||||||| |||||||| |||||||| Sbjct: 1601 tcgctcatcccctggcaataaccaatttcagggtcata 1564 Score = 40.1 bits (20), Expect = 9.6 Identities = 95/120 (79%) Strand = Plus / Minus Query: 129 gtcaccactaaatcatgggcgtcgtccaggagcttccaaatgtccagctgcccggccatg 188 |||||||| || |||||||| || || || |||||||| | ||||| || || |||||| Sbjct: 2126 gtcaccaccaagtcatgggcatcatctagaagcttccatacatccagttgaccagccatg 2067 Query: 189 ctgttacagtccctaatgatctcatccatgctgctatagctctctattatcagtttcctc 248 || | || ||||| | || ||||||||||| ||||| ||||||| ||| |||||||| Sbjct: 2066 ctctggcactcccttaaaatttcatccatgctactatacttctctatgatctgtttcctc 2007
>gb|AY102156.1| Arabidopsis thaliana AT5g53570/MNC6_11 mRNA, complete cds Length = 1653 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Minus Query: 550 cttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaa 607 ||||||| || ||||| ||||| || |||||| |||||||||| ||||||||||||| Sbjct: 1189 cttcgtcaagcctgaaattgtgccgagctttcttcatgaaaccaacaaagcaccagaa 1132
>dbj|AK221904.1| Arabidopsis thaliana mRNA for GTPase activator protein of Rab-like small GTPases-like protein, partial cds, clone: RAFL22-33-M06 Length = 1275 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Minus Query: 550 cttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaa 607 ||||||| || ||||| ||||| || |||||| |||||||||| ||||||||||||| Sbjct: 482 cttcgtcaagcctgaaattgtgccgagctttcttcatgaaaccaacaaagcaccagaa 425
>gb|AY039546.1| Arabidopsis thaliana AT5g53570/MNC6_11 mRNA, complete cds Length = 2273 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Minus Query: 550 cttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaa 607 ||||||| || ||||| ||||| || |||||| |||||||||| ||||||||||||| Sbjct: 1568 cttcgtcaagcctgaaattgtgccgagctttcttcatgaaaccaacaaagcaccagaa 1511
>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6 Length = 82952 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Plus Query: 550 cttcgtcgagtctgaagttgtggcgggctttcctcatgaaaccggcaaagcaccagaa 607 ||||||| || ||||| ||||| || |||||| |||||||||| ||||||||||||| Sbjct: 47621 cttcgtcaagcctgaaattgtgccgagctttcttcatgaaaccaacaaagcaccagaa 47678
>ref|NM_123957.2| Arabidopsis thaliana SAG12 (SENESCENCE-ASSOCIATED GENE 12); cysteine-type peptidase AT5G45890 (SAG12) mRNA, complete cds Length = 1253 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 gaaaccggcaaagcaccagaag 608 |||||||||||||||||||||| Sbjct: 439 gaaaccggcaaagcaccagaag 418
>gb|AF083753.1| Arabidopsis thaliana clone sps565 unknown mRNA Length = 454 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 gaaaccggcaaagcaccagaag 608 |||||||||||||||||||||| Sbjct: 426 gaaaccggcaaagcaccagaag 405
>gb|AY040073.1| Arabidopsis thaliana putative senescence-specific cysteine protease SAG12 (At5g45890) mRNA, complete cds Length = 1041 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 gaaaccggcaaagcaccagaag 608 |||||||||||||||||||||| Sbjct: 398 gaaaccggcaaagcaccagaag 377
>gb|AF370131.1| Arabidopsis thaliana putative senescence-specific cysteine protease SAG12 (At5g45890) mRNA, complete cds Length = 1253 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 gaaaccggcaaagcaccagaag 608 |||||||||||||||||||||| Sbjct: 437 gaaaccggcaaagcaccagaag 416
>gb|AC091216.1|CBRG46G14 Caenorhabditis briggsae cosmid G46G14, complete sequence Length = 41578 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 500 cttggtttttattatcttggag 521 |||||||||||||||||||||| Sbjct: 40361 cttggtttttattatcttggag 40382
>dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22 Length = 59648 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 gaaaccggcaaagcaccagaag 608 |||||||||||||||||||||| Sbjct: 31021 gaaaccggcaaagcaccagaag 31000
>gb|AY112376.1| Zea mays CL41055_1 mRNA sequence Length = 823 Score = 44.1 bits (22), Expect = 0.62 Identities = 37/42 (88%) Strand = Plus / Plus Query: 207 atctcatccatgctgctatagctctctattatcagtttcctc 248 ||||| |||||||||||||| |||| |||||||| |||||| Sbjct: 626 atctcgtccatgctgctatacttctcaattatcagcttcctc 667
>gb|U37336.1|ATU37336 Arabidopsis thaliana senescence-specific protein (SAG12) gene, promoter region and complete cds Length = 3659 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 gaaaccggcaaagcaccagaag 608 |||||||||||||||||||||| Sbjct: 2578 gaaaccggcaaagcaccagaag 2557
>emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on chromosome 13, complete sequence Length = 173538 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ccaggagcttccaaatgtcca 174 ||||||||||||||||||||| Sbjct: 146950 ccaggagcttccaaatgtcca 146930
>gb|AC004048.1|AC004048 Homo sapiens chromosome 4 clone B176A5 map 4q25, complete sequence Length = 100427 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 485 gtaaagatggaagtccttggttttt 509 |||||||||||||||||||| |||| Sbjct: 4496 gtaaagatggaagtccttggatttt 4472
>dbj|AP001819.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2023H4, complete sequence Length = 161775 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 485 gtaaagatggaagtccttggttttt 509 |||||||||||||||||||| |||| Sbjct: 32179 gtaaagatggaagtccttggatttt 32155
>gb|AC159413.1| Trypanosoma brucei chromosome 7 clone RPCI93-22O10, complete sequence Length = 156548 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 642 aggtgcaaggaggtcgctcatgccctggcaatagcc 677 ||||| ||||| |||||||||||||| |||||||| Sbjct: 89875 aggtgaaaggatatcgctcatgccctgacaatagcc 89910
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 642 aggtgcaaggaggtcgctcatgccctggcaatagcc 677 ||||| ||||| |||||||||||||| |||||||| Sbjct: 635416 aggtgaaaggatatcgctcatgccctgacaatagcc 635451
>gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8, complete sequence Length = 153310 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 642 aggtgcaaggaggtcgctcatgccctggcaatagcc 677 ||||| ||||| |||||||||||||| |||||||| Sbjct: 122216 aggtgaaaggatatcgctcatgccctgacaatagcc 122251
>gb|AC090890.3| Canis familiaris clone RP81-196D8, complete sequence Length = 175287 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agcttccaaatgtccagctg 178 |||||||||||||||||||| Sbjct: 107491 agcttccaaatgtccagctg 107472
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 agctgcccggccatgctgtt 193 |||||||||||||||||||| Sbjct: 3295891 agctgcccggccatgctgtt 3295910
>ref|XM_818769.1| Trypanosoma brucei TREU927 clone RPCI93-22O10 GTPase activating protein (Tb927.7.2470) partial mRNA Length = 2157 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 642 aggtgcaaggaggtcgctcatgccctggcaatagcc 677 ||||| ||||| |||||||||||||| |||||||| Sbjct: 1593 aggtgaaaggatatcgctcatgccctgacaatagcc 1558
>emb|CT010515.8| M.truncatula DNA sequence from clone MTH2-146B21 on chromosome 3, complete sequence Length = 130617 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 agatattgtatataacagac 45 |||||||||||||||||||| Sbjct: 22793 agatattgtatataacagac 22774
>ref|XM_809525.1| Trypanosoma cruzi strain CL Brener histone deacetylase (Tc00.1047053509395.120) partial mRNA Length = 1962 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 608 ggcttcatcgtcttcctcca 627 |||||||||||||||||||| Sbjct: 1260 ggcttcatcgtcttcctcca 1241
>emb|AL157388.12| Human DNA sequence from clone RP11-215A21 on chromosome 10 Contains the 5' end of a novel gene (MGC33215), a ribosomal protein L17 (rpL23) (RPL17) pseudogene and three CpG islands, complete sequence Length = 183382 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 cccacatcacctcccacagg 386 |||||||||||||||||||| Sbjct: 73276 cccacatcacctcccacagg 73257
>gb|AC023983.11| Homo sapiens chromosome 18, clone RP11-621L6, complete sequence Length = 190225 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 atcccagctactcgatcctg 119 |||||||||||||||||||| Sbjct: 54051 atcccagctactcgatcctg 54032
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 663 gccctggcaatagccaattt 682 |||||||||||||||||||| Sbjct: 906338 gccctggcaatagccaattt 906319
>gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205220 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 agatggaagtccttggtttt 508 |||||||||||||||||||| Sbjct: 58237 agatggaagtccttggtttt 58256
>gb|AC079465.5| Homo sapiens chromosome 5 clone CTD-2124P24, complete sequence Length = 184585 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 catcacctcccacaggctgagggt 394 ||||| |||||||||||||||||| Sbjct: 25972 catcagctcccacaggctgagggt 25949
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 tttttattatcttggagacc 524 |||||||||||||||||||| Sbjct: 781948 tttttattatcttggagacc 781929
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 tcagtttcctcttctccagt 257 |||||||||||||||||||| Sbjct: 1870429 tcagtttcctcttctccagt 1870448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,699,054 Number of Sequences: 3902068 Number of extensions: 6699054 Number of successful extensions: 233220 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 232882 Number of HSP's gapped (non-prelim): 332 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)