Clone Name | rbasd11m01 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009431.1| Triticum aestivum clone wlmk1.pk0035.e4:fis, full insert mRNA sequence Length = 1652 Score = 825 bits (416), Expect = 0.0 Identities = 492/515 (95%), Gaps = 2/515 (0%) Strand = Plus / Minus Query: 1 gctccgactttatccttccgccttacaaattacatttgatn-ttccattgcacttattcc 59 ||||||||||||| ||| ||| ||||| |||||||||||| ||| ||||||||||||| Sbjct: 1567 gctccgactttattctttcgctttacagattacatttgatcattcggttgcacttattcc 1508 Query: 60 gatcttactcgtacccaccagaatacaaggtggggggtcatactttgctgttcatcgtag 119 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 1507 gatcttactcgtacccaccagaatacaagg-ggggggtcatactttgctgttcatcaaag 1449 Query: 120 ctggaggcagaagaagaattacagccgagattttgctactgcagcgggtttgaagctcgc 179 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 1448 ctggaggcagaagaagaattacagccgagatttcgctaccgcagcaggtttgaagctcgc 1389 Query: 180 gatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtgccctcgtatga 239 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 1388 gatcccggtgatttctcttccggtcacaaggctgttgatgtcgtaggtgccctcatatga 1329 Query: 240 gtaaatcggctccagatcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1328 gtaaatcggttccagatcgcagaacgcctttgctactaaaaaatcagccaaaattccatt 1269 Query: 300 gccgcccaatagctctcgacccagagaaactacctcccttgacttgctggacgtccatgc 359 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1268 gccgcccaatagctctcggcccagagaaactacctcccttgacttgctggacgtccatgc 1209 Query: 360 cttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcg 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1208 cttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcg 1149 Query: 420 ccagccgacaagaagcatggcctggatgttaccaagcatccgaacaagcttttcttggtt 479 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1148 ccagccgacaaggagcatggcctggatgttaccaagcatccgaacaagcttttcttggtt 1089 Query: 480 gatctgaaaggctgccaggggagctccaaactgct 514 || |||||||||||||||||||||||||||||||| Sbjct: 1088 gagctgaaaggctgccaggggagctccaaactgct 1054
>dbj|AK071561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O18, full insert sequence Length = 1568 Score = 387 bits (195), Expect = e-104 Identities = 333/379 (87%) Strand = Plus / Minus Query: 136 aattacagccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttct 195 ||||| || |||||||||| | |||||| ||||||||||| ||||| || ||||| ||| Sbjct: 1417 aattaaagacgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctct 1358 Query: 196 cttccggtcacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccaga 255 ||||||||||| | ||||||||||||||||||||| ||||| ||| | || ||||||||| Sbjct: 1357 cttccggtcaccaagctgttgatgtcataggtgccttcgtacgagaagattggctccaga 1298 Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctct 315 |||||||||||||||||||| ||||| |||||||||||||| || || |||| |||||| Sbjct: 1297 tcacagaacgcctttgctaccagaaagtcagccaaaattccgtttccacccagtagctca 1238 Query: 316 cgacccagagaaactacctcccttgacttgctggacgtccatgccttgcccaaactagca 375 || || |||||||| |||||||| | ||| |||| |||||||||||||| ||||||||| Sbjct: 1237 cggccaagagaaaccacctccctagccttcttggatgtccatgccttgcctaaactagca 1178 Query: 376 tggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccgacaagaagc 435 ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| Sbjct: 1177 tggcctggtgtcattttgcctgattcatacagcttgcacaggcgccagccgacaagaagc 1118 Query: 436 atggcctggatgttaccaagcatccgaacaagcttttcttggttgatctgaaaggctgcc 495 ||||| |||||||| || ||||| |||||||||||||||||||||| |||||| |||||| Sbjct: 1117 atggcttggatgtttcctagcatgcgaacaagcttttcttggttgagctgaaaagctgcc 1058 Query: 496 aggggagctccaaactgct 514 | ||| ||||||| |||| Sbjct: 1057 aacggaactccaaattgct 1039
>ref|XM_475647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 385 bits (194), Expect = e-103 Identities = 326/370 (88%) Strand = Plus / Minus Query: 145 cgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggtc 204 |||||||||| | |||||| ||||||||||| ||||| || ||||| |||||||||||| Sbjct: 1286 cgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctctcttccggtc 1227 Query: 205 acaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaac 264 || | ||||||||||||||||||||| ||||| ||| | || |||||||||||||||||| Sbjct: 1226 accaagctgttgatgtcataggtgccttcgtacgagaagattggctccagatcacagaac 1167 Query: 265 gcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccaga 324 ||||||||||| ||||| |||||||||||||| || || |||| |||||| || || ||| Sbjct: 1166 gcctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaaga 1107 Query: 325 gaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctggt 384 ||||| |||||||| | ||| |||| |||||||||||||| |||||||||||||||||| Sbjct: 1106 gaaaccacctccctagccttcttggatgtccatgccttgcctaaactagcatggcctggt 1047 Query: 385 gtcattttgcctgactcatagagcttgcacaagcgccagccgacaagaagcatggcctgg 444 |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct: 1046 gtcattttgcctgattcatacagcttgcacaggcgccagccgacaagaagcatggcttgg 987 Query: 445 atgttaccaagcatccgaacaagcttttcttggttgatctgaaaggctgccaggggagct 504 ||||| || ||||| |||||||||||||||||||||| |||||| ||||||| ||| || Sbjct: 986 atgtttcctagcatgcgaacaagcttttcttggttgagctgaaaagctgccaacggaact 927 Query: 505 ccaaactgct 514 ||||| |||| Sbjct: 926 ccaaattgct 917
>ref|XM_550215.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1979 Score = 303 bits (153), Expect = 3e-79 Identities = 315/369 (85%) Strand = Plus / Minus Query: 144 ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 203 ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || || Sbjct: 1422 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 1363 Query: 204 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 263 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 1362 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 1303 Query: 264 cgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccag 323 |||||||| |||||||||||||||||||||||||| || ||||| | |||||||| || Sbjct: 1302 tgcctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgag 1243 Query: 324 agaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctgg 383 |||||| ||||| | | | | ||||| ||||| |||| || ||||||||||| ||||| Sbjct: 1242 agaaaccacctcacgagccattctggaagtccaacccttccctaaactagcatgccctgg 1183 Query: 384 tgtcattttgcctgactcatagagcttgcacaagcgccagccgacaagaagcatggcctg 443 ||||||||| ||||||||||| |||||||| | |||||||| ||||||||||| || || Sbjct: 1182 tgtcattttccctgactcataaagcttgcatagtcgccagccaacaagaagcatcgcttg 1123 Query: 444 gatgttaccaagcatccgaacaagcttttcttggttgatctgaaaggctgccaggggagc 503 ||||||||||||||| || ||||| ||||||||||| | |||||| ||| | || ||| | Sbjct: 1122 gatgttaccaagcattcgcacaagtttttcttggttcagctgaaaagctactagaggaac 1063 Query: 504 tccaaactg 512 ||||||||| Sbjct: 1062 tccaaactg 1054
>dbj|AK100550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103E08, full insert sequence Length = 1979 Score = 303 bits (153), Expect = 3e-79 Identities = 315/369 (85%) Strand = Plus / Minus Query: 144 ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 203 ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || || Sbjct: 1422 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 1363 Query: 204 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 263 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 1362 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 1303 Query: 264 cgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccag 323 |||||||| |||||||||||||||||||||||||| || ||||| | |||||||| || Sbjct: 1302 tgcctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgag 1243 Query: 324 agaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctgg 383 |||||| ||||| | | | | ||||| ||||| |||| || ||||||||||| ||||| Sbjct: 1242 agaaaccacctcacgagccattctggaagtccaacccttccctaaactagcatgccctgg 1183 Query: 384 tgtcattttgcctgactcatagagcttgcacaagcgccagccgacaagaagcatggcctg 443 ||||||||| ||||||||||| |||||||| | |||||||| ||||||||||| || || Sbjct: 1182 tgtcattttccctgactcataaagcttgcatagtcgccagccaacaagaagcatcgcttg 1123 Query: 444 gatgttaccaagcatccgaacaagcttttcttggttgatctgaaaggctgccaggggagc 503 ||||||||||||||| || ||||| ||||||||||| | |||||| ||| | || ||| | Sbjct: 1122 gatgttaccaagcattcgcacaagtttttcttggttcagctgaaaagctactagaggaac 1063 Query: 504 tccaaactg 512 ||||||||| Sbjct: 1062 tccaaactg 1054
>gb|AY107473.1| Zea mays PCO132850 mRNA sequence Length = 1709 Score = 281 bits (142), Expect = 1e-72 Identities = 295/346 (85%) Strand = Plus / Minus Query: 169 ttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtg 228 ||||||||||||||||| ||||| ||||| || | ||| ||||| || |||||||||||| Sbjct: 1421 ttgaagctcgcgatcccggtgatctctctgccagccaccaggctattaatgtcataggtg 1362 Query: 229 ccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagcc 288 |||||||| ||| |||| || |||| ||||| || ||||| || || ||||||||| || Sbjct: 1361 ccctcgtacgagaaaatgggttccacgtcacaaaatgccttggcgacaagaaaatcaacc 1302 Query: 289 aaaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgctg 348 ||||| |||||||| |||| ||||||||| || |||||||| |||||||| | ||| || Sbjct: 1301 aaaatgccattgccacccagtagctctcgcccaagagaaaccacctccctggccttcttg 1242 Query: 349 gacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagc 408 |||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 1241 gacgtccatgccttacctaaactagaccggcctggtgtcattttgcctgactcatacagc 1182 Query: 409 ttgcacaagcgccagccgacaagaagcatggcctggatgttaccaagcatccgaacaagc 468 ||||||| ||||| || || |||||||| ||||| ||||| |||||||| || |||||| Sbjct: 1181 ttgcacagtcgccatccaacgagaagcatagcctgaatgttgccaagcatgcggacaagc 1122 Query: 469 ttttcttggttgatctgaaaggctgccaggggagctccaaactgct 514 |||||||| |||| |||||| |||||||| ||||||||||| |||| Sbjct: 1121 ttttcttgattgagctgaaaagctgccagtggagctccaaattgct 1076
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 198 bits (100), Expect = 1e-47 Identities = 142/156 (91%) Strand = Plus / Plus Query: 359 ccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagc 418 ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct: 93712 ccttgcctaaactagcatggcctggtgtcattttgcctgattcatacagcttgcacaggc 93771 Query: 419 gccagccgacaagaagcatggcctggatgttaccaagcatccgaacaagcttttcttggt 478 |||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 93772 gccagccgacaagaagcatggcttggatgtttcctagcatgcgaacaagcttttcttggt 93831 Query: 479 tgatctgaaaggctgccaggggagctccaaactgct 514 ||| |||||| ||||||| ||| ||||||| |||| Sbjct: 93832 tgagctgaaaagctgccaacggaactccaaattgct 93867 Score = 129 bits (65), Expect = 1e-26 Identities = 116/133 (87%) Strand = Plus / Plus Query: 136 aattacagccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttct 195 ||||| || |||||||||| | |||||| ||||||||||| ||||| || ||||| ||| Sbjct: 92742 aattaaagacgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctct 92801 Query: 196 cttccggtcacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccaga 255 ||||||||||| | ||||||||||||||||||||| ||||| ||| | || ||||||||| Sbjct: 92802 cttccggtcaccaagctgttgatgtcataggtgccttcgtacgagaagattggctccaga 92861 Query: 256 tcacagaacgcct 268 ||||||||||||| Sbjct: 92862 tcacagaacgcct 92874 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 266 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 325 |||||||||| ||||| |||||||||||||| || || |||| |||||| || || |||| Sbjct: 93498 cctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaagag 93557 Query: 326 aaactacctcccttgacttgctggacgtccatgcct 361 |||| |||||||| | ||| |||| |||||||||| Sbjct: 93558 aaaccacctccctagccttcttggatgtccatgcct 93593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 198 bits (100), Expect = 1e-47 Identities = 142/156 (91%) Strand = Plus / Plus Query: 359 ccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagc 418 ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct: 3671365 ccttgcctaaactagcatggcctggtgtcattttgcctgattcatacagcttgcacaggc 3671424 Query: 419 gccagccgacaagaagcatggcctggatgttaccaagcatccgaacaagcttttcttggt 478 |||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||| Sbjct: 3671425 gccagccgacaagaagcatggcttggatgtttcctagcatgcgaacaagcttttcttggt 3671484 Query: 479 tgatctgaaaggctgccaggggagctccaaactgct 514 ||| |||||| ||||||| ||| ||||||| |||| Sbjct: 3671485 tgagctgaaaagctgccaacggaactccaaattgct 3671520 Score = 129 bits (65), Expect = 1e-26 Identities = 116/133 (87%) Strand = Plus / Plus Query: 136 aattacagccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttct 195 ||||| || |||||||||| | |||||| ||||||||||| ||||| || ||||| ||| Sbjct: 3670395 aattaaagacgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctct 3670454 Query: 196 cttccggtcacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccaga 255 ||||||||||| | ||||||||||||||||||||| ||||| ||| | || ||||||||| Sbjct: 3670455 cttccggtcaccaagctgttgatgtcataggtgccttcgtacgagaagattggctccaga 3670514 Query: 256 tcacagaacgcct 268 ||||||||||||| Sbjct: 3670515 tcacagaacgcct 3670527 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 266 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 325 |||||||||| ||||| |||||||||||||| || || |||| |||||| || || |||| Sbjct: 3671151 cctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaagag 3671210 Query: 326 aaactacctcccttgacttgctggacgtccatgcct 361 |||| |||||||| | ||| |||| |||||||||| Sbjct: 3671211 aaaccacctccctagccttcttggatgtccatgcct 3671246
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 139 bits (70), Expect = 1e-29 Identities = 127/146 (86%) Strand = Plus / Plus Query: 367 aaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccg 426 ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||||||| Sbjct: 3108089 aaactagcatgccctggtgtcattttccctgactcataaagcttgcatagtcgccagcca 3108148 Query: 427 acaagaagcatggcctggatgttaccaagcatccgaacaagcttttcttggttgatctga 486 ||||||||||| || ||||||||||||||||| || ||||| ||||||||||| | |||| Sbjct: 3108149 acaagaagcatcgcttggatgttaccaagcattcgcacaagtttttcttggttcagctga 3108208 Query: 487 aaggctgccaggggagctccaaactg 512 || ||| | || ||| |||||||||| Sbjct: 3108209 aaagctactagaggaactccaaactg 3108234 Score = 121 bits (61), Expect = 2e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 144 ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 203 ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || || Sbjct: 3107674 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 3107733 Query: 204 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 263 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 3107734 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 3107793 Query: 264 cgcct 268 |||| Sbjct: 3107794 tgcct 3107798 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 266 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 325 ||||||| |||||||||||||||||||||||||| || ||||| | |||||||| |||| Sbjct: 3107878 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 3107937 Query: 326 aaactacctc 335 |||| ||||| Sbjct: 3107938 aaaccacctc 3107947
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 139 bits (70), Expect = 1e-29 Identities = 127/146 (86%) Strand = Plus / Plus Query: 367 aaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccg 426 ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||||||| Sbjct: 51877 aaactagcatgccctggtgtcattttccctgactcataaagcttgcatagtcgccagcca 51936 Query: 427 acaagaagcatggcctggatgttaccaagcatccgaacaagcttttcttggttgatctga 486 ||||||||||| || ||||||||||||||||| || ||||| ||||||||||| | |||| Sbjct: 51937 acaagaagcatcgcttggatgttaccaagcattcgcacaagtttttcttggttcagctga 51996 Query: 487 aaggctgccaggggagctccaaactg 512 || ||| | || ||| |||||||||| Sbjct: 51997 aaagctactagaggaactccaaactg 52022 Score = 121 bits (61), Expect = 2e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 144 ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 203 ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || || Sbjct: 51462 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 51521 Query: 204 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 263 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 51522 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 51581 Query: 264 cgcct 268 |||| Sbjct: 51582 tgcct 51586 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 266 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 325 ||||||| |||||||||||||||||||||||||| || ||||| | |||||||| |||| Sbjct: 51666 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 51725 Query: 326 aaactacctc 335 |||| ||||| Sbjct: 51726 aaaccacctc 51735
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 139 bits (70), Expect = 1e-29 Identities = 127/146 (86%) Strand = Plus / Plus Query: 367 aaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccg 426 ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||||||| Sbjct: 76129 aaactagcatgccctggtgtcattttccctgactcataaagcttgcatagtcgccagcca 76188 Query: 427 acaagaagcatggcctggatgttaccaagcatccgaacaagcttttcttggttgatctga 486 ||||||||||| || ||||||||||||||||| || ||||| ||||||||||| | |||| Sbjct: 76189 acaagaagcatcgcttggatgttaccaagcattcgcacaagtttttcttggttcagctga 76248 Query: 487 aaggctgccaggggagctccaaactg 512 || ||| | || ||| |||||||||| Sbjct: 76249 aaagctactagaggaactccaaactg 76274 Score = 121 bits (61), Expect = 2e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 144 ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 203 ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || || Sbjct: 75714 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 75773 Query: 204 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 263 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 75774 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 75833 Query: 264 cgcct 268 |||| Sbjct: 75834 tgcct 75838 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 266 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 325 ||||||| |||||||||||||||||||||||||| || ||||| | |||||||| |||| Sbjct: 75918 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 75977 Query: 326 aaactacctc 335 |||| ||||| Sbjct: 75978 aaaccacctc 75987
>gb|AY110040.1| Zea mays CL716_1 mRNA sequence Length = 1802 Score = 129 bits (65), Expect = 1e-26 Identities = 275/345 (79%) Strand = Plus / Minus Query: 170 tgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtgc 229 |||||||||||||||| |||| || || |||||||| |||||||||||||| || |||| Sbjct: 1385 tgaagctcgcgatcccggtgacctccctgccggtcaccaggctgttgatgtcgtacgtgc 1326 Query: 230 cctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagcca 289 ||||||| ||||| || |||||||| || ||||||||||| ||||| || || || |||| Sbjct: 1325 cctcgtacgagtagatgggctccaggtcgcagaacgccttggctacaaggaagtcggcca 1266 Query: 290 aaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgctgg 349 |||| || || || |||| |||||||| || || || || ||||| | | | | |||| Sbjct: 1265 aaatcccgttcccacccagcagctctcggccaagggagaccacctcgcgggccgtcctgg 1206 Query: 350 acgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagct 409 | |||| ||||| || | ||||| ||||| || |||||||| || ||||| ||||||| Sbjct: 1205 agttccaagccttccctaggctagcgtggcccggcgtcattttccccgactcgtagagct 1146 Query: 410 tgcacaagcgccagccgacaagaagcatggcctggatgttaccaagcatccgaacaagct 469 |||| | ||||||||||| || | ||| | ||||| |||||| |||||||| | |||| Sbjct: 1145 tgcagagacgccagccgacgaggaccatcgactggacgttaccgagcatccgggcgagct 1086 Query: 470 tttcttggttgatctgaaaggctgccaggggagctccaaactgct 514 | |||||||| | |||||| || ||||| || |||| ||||||| Sbjct: 1085 tctcttggttcagctgaaacgccgccagagggactccgaactgct 1041
>gb|AY600434.1| Tropaeolum majus putative short-chain acyl-CoA oxidase mRNA, complete cds Length = 1553 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 226 gtgccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatca 285 ||||| ||||||| || || ||||||| |||||| || ||||| || |||||||||||| Sbjct: 1291 gtgccttcgtatgtatagatgggctccaaatcacaaaatgccttggcaactagaaaatca 1232 Query: 286 gccaaaattccatt 299 | ||||||||||| Sbjct: 1231 gataaaattccatt 1218
>ref|NM_115043.2| Arabidopsis thaliana ACX4 (ACYL-COA OXIDASE 4); oxidoreductase AT3G51840 (ACX4) mRNA, complete cds Length = 1759 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1354 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1311
>gb|AY125536.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1311 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1199 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1156
>gb|AY094441.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1718 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1354 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1311
>dbj|AK222131.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds, clone: RAFL22-95-I12 Length = 853 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 507 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 464
>gb|AY087793.1| Arabidopsis thaliana clone 3844 mRNA, complete sequence Length = 1626 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1257 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1214
>dbj|AB017643.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds Length = 1593 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1238 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1195
>gb|U72505.1|ATU72505 Arabidopsis thaliana putative acyl-coA dehydrogenase G6p (AtG6) mRNA, complete cds Length = 1579 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 299 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1224 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1181
>gb|AC091152.18| Homo sapiens chromosome 17, clone RP11-1072C15, complete sequence Length = 181835 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 138496 agccgagattttgctactgca 138516
>gb|AC040970.7| Homo sapiens chromosome 8, clone RP11-809O17, complete sequence Length = 183894 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 58833 agccgagattttgctactgca 58813
>gb|AC010422.7| Homo sapiens chromosome 19 clone CTD-2192J16, complete sequence Length = 203790 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 91681 agccgagattttgctactgca 91661
>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence Length = 160545 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 49090 agccgagattttgctactgca 49070
>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence Length = 180535 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 83803 agccgagattttgctactgca 83823
>gb|AC068056.7| Homo sapiens BAC clone RP11-84M3 from 2, complete sequence Length = 193017 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 103599 agccgagattttgctactgca 103619
>gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Cancer Institute Male Chimpanzee BAC Library) complete sequence Length = 173720 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 agccgagattttgctactgca 162 ||||||||||||||||||||| Sbjct: 135530 agccgagattttgctactgca 135510
>emb|Z81042.1|CEC27H6 Caenorhabditis elegans Cosmid C27H6, complete sequence Length = 24775 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 aaaattccattgccgcccaa 308 |||||||||||||||||||| Sbjct: 13010 aaaattccattgccgcccaa 12991
>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence Length = 153028 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cacaaggctgttgatgtcat 223 |||||||||||||||||||| Sbjct: 94000 cacaaggctgttgatgtcat 93981
>emb|AL356742.12| Human DNA sequence from clone RP11-216C10 on chromosome 20 Contains the 3' end of a novel gene, complete sequence Length = 75588 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 cctgactcatagagcttgca 413 |||||||||||||||||||| Sbjct: 51187 cctgactcatagagcttgca 51168
>emb|CR857871.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0226 (from clone DKFZp459M0226) Length = 4240 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcctttgctactagaaaatc 284 |||||||||||||||||||| Sbjct: 2882 gcctttgctactagaaaatc 2863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,045,245 Number of Sequences: 3902068 Number of extensions: 4045245 Number of successful extensions: 64849 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64757 Number of HSP's gapped (non-prelim): 88 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)