ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11l23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108180.1| Zea mays PCO134590 mRNA sequence Length = 1538 Score = 240 bits (121), Expect = 6e-60 Identities = 316/381 (82%) Strand = Plus / Minus Query: 299 ttgcttaatttcttgtttggtgcaagtatgccacgtttttcaatgctcttatagcgatcc 358 ||||||| | ||||| ||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 1287 ttgcttattctcttgcttggtgcaagtattccacgtttctcaatgctcttgtagcgatcc 1228 Query: 359 ctcgctagattgcagcaccccttcagctttctgagcgaaccactaatctcctctgtcaac 418 || || ||||| || |||||||| |||||||| || || ||||||||||| |||||||| Sbjct: 1227 cttgcaagattacaacacccctttagctttctaagtgagccactaatctcttctgtcaat 1168 Query: 419 agaacttgaacgggagcaggttcaaacttgtgtctacccagacgatgtggggctgacttg 478 ||||||||||| ||||| || ||||| |||||||| ||||||||| ||||| |||| || Sbjct: 1167 agaacttgaacaggagctggctcaaatttgtgtctgcccagacgaggtgggcctgattta 1108 Query: 479 agtctttcctgcttagccacagttcgccttgtgtgttttaactccttttccttgtcctct 538 |||| |||| ||| |||||||||| | | |||| | ||||||||||||||||||| Sbjct: 1107 cgtctctcctctttaaccacagttcgacgtttgtgcctcttctccttttccttgtcctct 1048 Query: 539 ttcgctatctcctctaatatatttggcaagctatctatttgctttgaaagaacttccagt 598 || |||||||| || | ||||||||||||||| || |||| || ||| | ||||| | Sbjct: 1047 ttagctatctcatccattatatttggcaagctgtcaatttctttcaaaatattttccatt 988 Query: 599 ttctttgcatctgcttctgtccttaacctctctttacgacgagcccttttgttcagttcc 658 |||||||| | ||||||| ||||||||||| || || ||||| ||| |||||| ||| Sbjct: 987 ttctttgctttcgcttctgctcttaacctctccttccggcgagctcttctgttcatttct 928 Query: 659 actctcgtaactctttttgtt 679 ||||| ||||||||||||||| Sbjct: 927 actcttgtaactctttttgtt 907
>gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09, complete sequence Length = 95755 Score = 113 bits (57), Expect = 9e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 569 ctatctatttgctttgaaagaacttccagtttctttgcatctgcttctgtccttaacctc 628 |||||||||| |||||||||| ||||| |||||||| || ||||||| ||||||||| Sbjct: 49990 ctatctatttcctttgaaagattttccatcttctttgcttcagcttctgctcttaacctc 50049 Query: 629 tctttacgacgagcccttttgttcagttccactctcgtaactctttttgtttt 681 || ||||||||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 50050 tccttacgacgagctcttttgttcagttctactcttgtaactcttttcgtttt 50102 Score = 93.7 bits (47), Expect = 8e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 444 acttgtgtctacccagacgatgtggggctgacttgagtctttcctgcttagccacagttc 503 |||||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||||| Sbjct: 49776 acttgtgtctgcccagacgaggcggggctgacttcagtctttcctgtttagccacagttc 49835 Query: 504 gccttgtgtgttttaactccttttcct 530 ||||| |||| || ||||||||||| Sbjct: 49836 gccttatgtgccttttctccttttcct 49862 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 315 ttggtgcaagtatgccacgtttttcaatgctcttatagcgatccctcgctagattgcagc 374 ||||||||||||| |||||||| || ||||||||||| || ||||| |||||||| |||| Sbjct: 48646 ttggtgcaagtattccacgtttctcgatgctcttatatcggtcccttgctagattacagc 48705 Query: 375 acccct 380 |||||| Sbjct: 48706 acccct 48711 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 378 ccttcagctttctgagcgaaccactaatctcctctgtcaacagaacttgaacgggagcag 437 ||||||||||||| || || ||||||||||| ||||| || ||||||||||| ||||| | Sbjct: 48786 ccttcagctttctaagagagccactaatctcttctgttaatagaacttgaacaggagctg 48845 Query: 438 gttcaaa 444 ||||||| Sbjct: 48846 gttcaaa 48852
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 9e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 569 ctatctatttgctttgaaagaacttccagtttctttgcatctgcttctgtccttaacctc 628 |||||||||| |||||||||| ||||| |||||||| || ||||||| ||||||||| Sbjct: 2482968 ctatctatttcctttgaaagattttccatcttctttgcttcagcttctgctcttaacctc 2483027 Query: 629 tctttacgacgagcccttttgttcagttccactctcgtaactctttttgtttt 681 || ||||||||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 2483028 tccttacgacgagctcttttgttcagttctactcttgtaactcttttcgtttt 2483080 Score = 93.7 bits (47), Expect = 8e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 444 acttgtgtctacccagacgatgtggggctgacttgagtctttcctgcttagccacagttc 503 |||||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||||| Sbjct: 2482754 acttgtgtctgcccagacgaggcggggctgacttcagtctttcctgtttagccacagttc 2482813 Query: 504 gccttgtgtgttttaactccttttcct 530 ||||| |||| || ||||||||||| Sbjct: 2482814 gccttatgtgccttttctccttttcct 2482840 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 315 ttggtgcaagtatgccacgtttttcaatgctcttatagcgatccctcgctagattgcagc 374 ||||||||||||| |||||||| || ||||||||||| || ||||| |||||||| |||| Sbjct: 2481624 ttggtgcaagtattccacgtttctcgatgctcttatatcggtcccttgctagattacagc 2481683 Query: 375 acccct 380 |||||| Sbjct: 2481684 acccct 2481689 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 378 ccttcagctttctgagcgaaccactaatctcctctgtcaacagaacttgaacgggagcag 437 ||||||||||||| || || ||||||||||| ||||| || ||||||||||| ||||| | Sbjct: 2481764 ccttcagctttctaagagagccactaatctcttctgttaatagaacttgaacaggagctg 2481823 Query: 438 gttcaaa 444 ||||||| Sbjct: 2481824 gttcaaa 2481830
>ref|XM_637697.1| Dictyostelium discoideum hypothetical protein (DDB0217964), partial mRNA Length = 1035 Score = 48.1 bits (24), Expect = 0.045 Identities = 32/35 (91%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagcatca 781 ||||| |||||||||| ||||||||||||||||| Sbjct: 752 catcatcagcagcatcatcatcatcagcagcatca 786
>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence Length = 302156 Score = 48.1 bits (24), Expect = 0.045 Identities = 32/35 (91%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagcatca 781 ||||| |||||||||| ||||||||||||||||| Sbjct: 278495 catcatcagcagcatcatcatcatcagcagcatca 278529
>ref|XM_502474.1| Yarrowia lipolytica CLIB122, YALI0D06193g predicted mRNA Length = 1944 Score = 48.1 bits (24), Expect = 0.045 Identities = 32/35 (91%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagcatca 781 |||||||||||||||| || |||||||||||||| Sbjct: 406 catcagcagcagcatcaacagcatcagcagcatca 440
>gb|AF113024.1|AF113024 Cyprinodon diabolis microsatellite C275 sequence Length = 300 Score = 48.1 bits (24), Expect = 0.045 Identities = 32/35 (91%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagcatca 781 ||||||||||| |||| ||||||||||||||||| Sbjct: 181 catcagcagcatcatcatcatcatcagcagcatca 215
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 48.1 bits (24), Expect = 0.045 Identities = 32/35 (91%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagcatca 781 |||||||||||||||| || |||||||||||||| Sbjct: 794729 catcagcagcagcatcaacagcatcagcagcatca 794763
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 46.1 bits (23), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Plus Query: 731 gcagcatctacatctncatcagcagcagca 760 |||||| |||||||| |||||||||||||| Sbjct: 160241 gcagcaactacatctccatcagcagcagca 160270
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 46.1 bits (23), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Plus Query: 731 gcagcatctacatctncatcagcagcagca 760 |||||| |||||||| |||||||||||||| Sbjct: 23498 gcagcaactacatctccatcagcagcagca 23527
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 46.1 bits (23), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Plus Query: 731 gcagcatctacatctncatcagcagcagca 760 |||||| |||||||| |||||||||||||| Sbjct: 121545 gcagcaactacatctccatcagcagcagca 121574
>ref|NM_132412.1| Drosophila melanogaster CG9817-RA (CG9817), mRNA Length = 6497 Score = 46.1 bits (23), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Plus Query: 731 gcagcatctacatctncatcagcagcagca 760 |||||| |||||||| |||||||||||||| Sbjct: 2829 gcagcaactacatctccatcagcagcagca 2858
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 46.1 bits (23), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 731 gcagcatctacatctncatcagcagcagca 760 |||||| |||||||| |||||||||||||| Sbjct: 121201 gcagcaactacatctccatcagcagcagca 121172
>gb|AC159998.6| Mus musculus BAC clone RP24-576J22 from chromosome 10, complete sequence Length = 166313 Score = 44.1 bits (22), Expect = 0.70 Identities = 38/44 (86%) Strand = Plus / Minus Query: 732 cagcatctacatctncatcagcagcagcatctncatcatcagca 775 ||||||||||||| |||||||| || |||| ||||||||||| Sbjct: 72238 cagcatctacatcctcatcagcatcaccatcagcatcatcagca 72195
>ref|XM_757360.1| Ustilago maydis 521 hypothetical protein (UM06306.1) partial mRNA Length = 4104 Score = 44.1 bits (22), Expect = 0.70 Identities = 27/29 (93%) Strand = Plus / Plus Query: 732 cagcatctacatctncatcagcagcagca 760 |||||||| ||||| |||||||||||||| Sbjct: 3934 cagcatctgcatctgcatcagcagcagca 3962
>emb|BX663609.29| Zebrafish DNA sequence from clone DKEY-182H7 in linkage group 7, complete sequence Length = 248960 Score = 44.1 bits (22), Expect = 0.70 Identities = 27/29 (93%) Strand = Plus / Minus Query: 750 cagcagcagcatctncatcatcagcagca 778 ||||||||||||| |||||||||||||| Sbjct: 119575 cagcagcagcatcatcatcatcagcagca 119547
>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete sequence Length = 217582 Score = 44.1 bits (22), Expect = 0.70 Identities = 25/26 (96%) Strand = Plus / Minus Query: 766 atcatcagcagcatcaagaaaaaatt 791 |||||||| ||||||||||||||||| Sbjct: 13790 atcatcaggagcatcaagaaaaaatt 13765
>gb|AY830454.1| Petromyzon marinus SoxF (SoxF) mRNA, complete cds Length = 1805 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||||| ||||| |||||||| Sbjct: 1160 catcagcagcagcatcatcatcagcagcagca 1191
>ref|XM_638141.1| Dictyostelium discoideum hypothetical protein (DDB0217783), partial mRNA Length = 3012 Score = 42.1 bits (21), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 739 tacatctncatcagcagcagcatc 762 ||||||| |||||||||||||||| Sbjct: 2607 tacatctccatcagcagcagcatc 2630
>ref|XM_368359.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00885.4) partial mRNA Length = 2445 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 ||||||||||| || || |||||||||||||| Sbjct: 1438 cagcagcagcagcttcaacatcagcagcatca 1469
>ref|XM_419682.1| PREDICTED: Gallus gallus similar to mitochondrial translational release factor 1-like (LOC421643), mRNA Length = 1740 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 669 ctctttttgttttcttcctct 689 ||||||||||||||||||||| Sbjct: 1274 ctctttttgttttcttcctct 1254
>gb|AC120397.7| Mus musculus chromosome 18, clone RP24-332E21, complete sequence Length = 178502 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 ctcttttaactccctcatcaa 125 ||||||||||||||||||||| Sbjct: 120262 ctcttttaactccctcatcaa 120282
>gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosome 14, complete sequence Length = 210128 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 ccagtttctttgcatctgctt 614 ||||||||||||||||||||| Sbjct: 5557 ccagtttctttgcatctgctt 5537
>gb|AY581385.1| HIV-1 isolate 03LSK6-692 from South Korea vif protein (vif) gene, complete cds Length = 579 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 cttgtgtgttttaactccttttcct 530 |||||||||| |||||||||||||| Sbjct: 292 cttgtgtgttataactccttttcct 268
>gb|AY581384.1| HIV-1 isolate 03LSK6-681 from South Korea vif protein (vif) gene, complete cds Length = 579 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 cttgtgtgttttaactccttttcct 530 |||||||||| |||||||||||||| Sbjct: 292 cttgtgtgttataactccttttcct 268
>gb|AY581383.1| HIV-1 isolate 94LSK6-759 from South Korea vif protein (vif) gene, complete cds Length = 579 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 cttgtgtgttttaactccttttcct 530 |||||||||| |||||||||||||| Sbjct: 292 cttgtgtgttataactccttttcct 268
>gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome 14, complete sequence Length = 243730 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 ccagtttctttgcatctgctt 614 ||||||||||||||||||||| Sbjct: 212164 ccagtttctttgcatctgctt 212144
>ref|XM_549330.2| PREDICTED: Canis familiaris similar to CG1 protein (F18) (LOC492210), mRNA Length = 2490 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 ||||||||||||| || |||||||||||||| Sbjct: 1675 cagcagcagcatcagcagcatcagcagcatca 1706
>gb|AC116924.3| Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence Length = 88549 Score = 42.1 bits (21), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 739 tacatctncatcagcagcagcatc 762 ||||||| |||||||||||||||| Sbjct: 5078 tacatctccatcagcagcagcatc 5055
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 754 agcagcatctncatcatcagcagcatca 781 ||||||||| ||||||||||||||||| Sbjct: 393231 agcagcatcatcatcatcagcagcatca 393258
>gb|AC121791.3| Mus musculus BAC clone RP23-401H19 from chromosome 14, complete sequence Length = 197720 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||||| ||||| |||||||| Sbjct: 94223 catcagcagcagcatcatcatcaacagcagca 94254
>gb|AC117262.2| Mus musculus BAC clone RP24-537M7 from 2, complete sequence Length = 156547 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 666 taactctttttgttttcttcctctc 690 ||||||||||| ||||||||||||| Sbjct: 108418 taactctttttcttttcttcctctc 108442
>gb|AY225852.2| Ctenopharyngodon idella CBP/p300-interacting transactivator (cited3) mRNA, complete cds Length = 1585 Score = 42.1 bits (21), Expect = 2.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagcatcaa 782 |||||||||||||| | ||||| |||||||||||| Sbjct: 443 catcagcagcagcagcagcatcagcagcagcatcaa 478
>gb|AY060464.1| Drosophila melanogaster SD04616 full insert cDNA Length = 4295 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 ||||||||||||| || |||||||||||||| Sbjct: 549 cagcagcagcatcagcagcatcagcagcatca 580
>emb|AL512449.6| Human DNA sequence from clone RP11-286E7 on chromosome 1 Contains part of the RPS6KC1 gene for ribosomal protein S6 kinase 52kDa polypeptide 1 and a CpG island, complete sequence Length = 176690 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 668 actctttttgttttcttcctctctc 692 ||||||||| ||||||||||||||| Sbjct: 69717 actctttttcttttcttcctctctc 69741
>gb|BT010312.1| Drosophila melanogaster AT29286 full insert cDNA Length = 4932 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 4275 agcagcagcagcttcatcatcagcagca 4302
>emb|AL139259.15| Human DNA sequence from clone RP5-861H2 on chromosome 1q41 Contains part of a novel gene, complete sequence Length = 28489 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 767 tcatcagcagcatcaagaaaa 787 ||||||||||||||||||||| Sbjct: 16009 tcatcagcagcatcaagaaaa 15989
>gb|AC023714.5| Drosophila melanogaster X BAC RP98-19D19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160100 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| || || ||||||||||| Sbjct: 38764 catcagcagcagcagctgcagcatcagcagca 38795
>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence Length = 200657 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 747 catcagcagcagcatctncatcatcagcagca 778 ||||| |||||||||| |||||||||||||| Sbjct: 167990 catcatcagcagcatcatcatcatcagcagca 167959
>emb|AJ308118.2|LFL308118 Lampetra fluviatilis mRNA for type I keratin 18 Length = 2508 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 ||||| |||||||||| |||||||||||||| Sbjct: 29 catcatcagcagcatcatcatcatcagcagca 60
>gb|AC104626.3| Drosophila melanogaster X BAC RP98-28L7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184454 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 |||||||||||||| || |||||| ||||||| Sbjct: 15679 cagcagcagcatctgcagcatcagaagcatca 15648
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160440 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| | |||||||||||||| Sbjct: 90177 catcagcagcagcagcaacatcatcagcagca 90146
>gb|AY119550.1| Drosophila melanogaster GH27233 full insert cDNA Length = 3796 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 3334 agcagcagcagcttcatcatcagcagca 3361
>gb|AY119466.1| Drosophila melanogaster GH03957 full insert cDNA Length = 4347 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 3283 agcagcagcagcttcatcatcagcagca 3310
>gb|AC104510.6| Drosophila melanogaster X BAC RP98-26J12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168583 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 |||||||||||||| || |||||| ||||||| Sbjct: 158326 cagcagcagcatctgcagcatcagaagcatca 158295
>emb|BX465189.9| Zebrafish DNA sequence from clone RP71-47G15 in linkage group 23, complete sequence Length = 132715 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 tccttttccttgtcctctttc 541 ||||||||||||||||||||| Sbjct: 57969 tccttttccttgtcctctttc 57989
>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187921 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| | |||||||||||||| Sbjct: 25371 catcagcagcagcagcaacatcatcagcagca 25340
>ref|NM_206622.2| Drosophila melanogaster CG32776-RB, transcript variant B (CG32776), mRNA Length = 3981 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| || || ||||||||||| Sbjct: 715 catcagcagcagcagctgcagcatcagcagca 746
>ref|NM_206150.1| Drosophila melanogaster CG30460-RB, transcript variant B (CG30460), mRNA Length = 4790 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 3732 agcagcagcagcttcatcatcagcagca 3759
>ref|NM_206149.1| Drosophila melanogaster CG30460-RA, transcript variant A (CG30460), mRNA Length = 5954 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 4896 agcagcagcagcttcatcatcagcagca 4923
>ref|NM_206148.1| Drosophila melanogaster CG30460-RD, transcript variant D (CG30460), mRNA Length = 5111 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 4053 agcagcagcagcttcatcatcagcagca 4080
>gb|AC067793.9| Homo sapiens chromosome 15, clone RP11-552D14, complete sequence Length = 189722 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 ||||||||||||| ||||||||||| ||||| Sbjct: 124102 cagcagcagcatcagcatcatcagcatcatca 124071
>ref|NM_167335.1| Drosophila melanogaster Smrter CG4013-RC, transcript variant C (Smr), mRNA Length = 13475 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| | |||||||||||||| Sbjct: 1550 catcagcagcagcagcaacatcatcagcagca 1581
>ref|NM_167334.1| Drosophila melanogaster Smrter CG4013-RB, transcript variant B (Smr), mRNA Length = 12702 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| | |||||||||||||| Sbjct: 777 catcagcagcagcagcaacatcatcagcagca 808
>ref|NM_167277.1| Drosophila melanogaster CG11105-RA, transcript variant A (CG11105), mRNA Length = 1275 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 |||||||||||||| || |||||| ||||||| Sbjct: 364 cagcagcagcatctgcagcatcagaagcatca 395
>ref|NM_137342.2| Drosophila melanogaster CG30460-RC, transcript variant C (CG30460), mRNA Length = 6491 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 5433 agcagcagcagcttcatcatcagcagca 5460
>gb|AF375008.1| Oncorhynchus mykiss microsatellite OMM1004 sequence Length = 698 Score = 42.1 bits (21), Expect = 2.8 Identities = 32/35 (91%), Gaps = 3/35 (8%) Strand = Plus / Minus Query: 747 catcagcagcagcatctncatcatcagcagcatca 781 |||||||||||||||| |||||||||||||||| Sbjct: 172 catcagcagcagcatc---atcatcagcagcatca 141
>ref|NM_132471.1| Drosophila melanogaster CG11105-RB, transcript variant B (CG11105), mRNA Length = 1469 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 |||||||||||||| || |||||| ||||||| Sbjct: 558 cagcagcagcatctgcagcatcagaagcatca 589
>ref|NM_080536.2| Drosophila melanogaster Smrter CG4013-RA, transcript variant A (Smr), mRNA Length = 12622 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| | |||||||||||||| Sbjct: 697 catcagcagcagcagcaacatcatcagcagca 728
>ref|NM_001038740.1| Drosophila melanogaster CG32776-RD, transcript variant D (CG32776), mRNA Length = 3984 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| || || ||||||||||| Sbjct: 715 catcagcagcagcagctgcagcatcagcagca 746
>gb|AC099032.1| Drosophila melanogaster, chromosome 2R, region 53F-54A, BAC clone BACR32P08, complete sequence Length = 163072 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 74510 agcagcagcagcttcatcatcagcagca 74483
>gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, complete sequence Length = 154318 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 ctccttttccttgtcctcttt 540 ||||||||||||||||||||| Sbjct: 138435 ctccttttccttgtcctcttt 138415
>gb|AY186999.1| Drosophila virilis unc-5 (unc-5) gene, partial cds; and ap (ap), vlc (vlc), CG17337 (CG17337), and CG13533 (CG13533) genes, complete cds Length = 83253 Score = 42.1 bits (21), Expect = 2.8 Identities = 34/39 (87%) Strand = Plus / Minus Query: 736 atctacatctncatcagcagcagcatctncatcatcagc 774 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 54210 atctacatccacatcagcagcagcatcagcatcagcagc 54172
>gb|AC154663.2| Mus musculus BAC clone RP24-283H12 from 16, complete sequence Length = 177341 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 ||||||||||||| ||||||||||| ||||| Sbjct: 97953 cagcagcagcatcagcatcatcagcatcatca 97984
>emb|BX571841.6| Zebrafish DNA sequence from clone DKEY-52H13 in linkage group 18, complete sequence Length = 105977 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 tgcttaatttcttgtttggtg 320 ||||||||||||||||||||| Sbjct: 67117 tgcttaatttcttgtttggtg 67137
>emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in linkage group 4, complete sequence Length = 201932 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 ||||||||||||| ||||||||||| ||||| Sbjct: 115074 cagcagcagcatcatcatcatcagcatcatca 115043
>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete sequence Length = 260337 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 61802 agcagcagcagcttcatcatcagcagca 61775
>gb|AC005717.2|AC005717 Drosophila melanogaster, chromosome 2R, region 53E6-53F4, P1 clone DS00078, complete sequence Length = 51289 Score = 42.1 bits (21), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 751 agcagcagcatctncatcatcagcagca 778 |||||||||| || |||||||||||||| Sbjct: 18068 agcagcagcagcttcatcatcagcagca 18095
>gb|AE003485.3| Drosophila melanogaster chromosome X, section 37 of 74 of the complete sequence Length = 283075 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 750 cagcagcagcatctncatcatcagcagcatca 781 |||||||||||||| || |||||| ||||||| Sbjct: 138519 cagcagcagcatctgcagcatcagaagcatca 138488
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| | |||||||||||||| Sbjct: 107298 catcagcagcagcagcaacatcatcagcagca 107267
>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete sequence Length = 326403 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||||||||| || || ||||||||||| Sbjct: 139489 catcagcagcagcagctgcagcatcagcagca 139458
>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence Length = 148876 Score = 42.1 bits (21), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 747 catcagcagcagcatctncatcatcagcagca 778 |||||||| ||||||| |||||||||||||| Sbjct: 44201 catcagcatcagcatcatcatcatcagcagca 44232
>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete sequences Length = 215225 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 671 ctttttgttttcttcctctct 691 ||||||||||||||||||||| Sbjct: 175199 ctttttgttttcttcctctct 175179
>gb|DQ314865.1| Homo sapiens arrestin, beta 1 (ARRB1) gene, complete cds Length = 89549 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 671 ctttttgttttcttcctctct 691 ||||||||||||||||||||| Sbjct: 81559 ctttttgttttcttcctctct 81579
>emb|AL845161.5| Mouse DNA sequence from clone RP23-214I20 on chromosome 2, complete sequence Length = 233212 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 667 aactctttttgttttcttcct 687 ||||||||||||||||||||| Sbjct: 104445 aactctttttgttttcttcct 104425
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 taactctttttgttttcttcctctc 690 ||||||||||| ||||||||||||| Sbjct: 158881 taactctttttcttttcttcctctc 158857
>emb|X97283.1|GCINTALPH G.cydonium mRNA for integrin alpha subunit Length = 3546 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 685 cctctctccagttagagagtcagca 709 |||||||||||| |||||||||||| Sbjct: 2266 cctctctccagtcagagagtcagca 2242 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,109,785 Number of Sequences: 3902068 Number of extensions: 8109785 Number of successful extensions: 172613 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 172208 Number of HSP's gapped (non-prelim): 396 length of query: 793 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 770 effective length of database: 17,143,297,704 effective search space: 13200339232080 effective search space used: 13200339232080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
