>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
            proteasome regulatory subunit RPN1) (26S proteasome
            regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 41/71 (57%), Positives = 50/71 (70%)
 Frame = -1

Query: 618  DLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPVLLAAGERAELATDKYIPLTSTLE 439
            +L+PL                 +PKTITGFQTHTTPVLLA GERAELAT++++P+T  LE
Sbjct: 836  ELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILE 895

Query: 438  GFVILKKNPEY 406
            GFVIL+KNP Y
Sbjct: 896  GFVILRKNPNY 906

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
            proteasome regulatory subunit RPN1) (26S proteasome
            regulatory subunit S2) (26S proteasome subunit p97)
            (Tumor necrosis factor type 1 receptor-associated protein
            2) (55.11 protein)
          Length = 908

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 41/71 (57%), Positives = 50/71 (70%)
 Frame = -1

Query: 618  DLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPVLLAAGERAELATDKYIPLTSTLE 439
            +L+PL                 +PKTITGFQTHTTPVLLA GERAELAT++++P+T  LE
Sbjct: 836  ELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILE 895

Query: 438  GFVILKKNPEY 406
            GFVIL+KNP Y
Sbjct: 896  GFVILRKNPNY 906

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 41/74 (55%), Positives = 48/74 (64%)
 Frame = -1

Query: 618  DLKPLXXXXXXXXXXXXXXXXXRPKTITGFQTHTTPVLLAAGERAELATDKYIPLTSTLE 439
            DLKPL                 RPKTITG+QT +TPVLL  GERAEL  D+YI L+STLE
Sbjct: 809  DLKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLSSTLE 868

Query: 438  GFVILKKNPEYHEE 397
            G VIL+KNP++  E
Sbjct: 869  GLVILRKNPDWEGE 882

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
            non-ATPase subunit 1)
          Length = 992

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 35/51 (68%), Positives = 40/51 (78%)
 Frame = -1

Query: 549  PKTITGFQTHTTPVLLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 397
            PK ITG+ T +TPVLL  GERAEL TD+YI  TS +EG VILKKNP+Y EE
Sbjct: 941  PKKITGWITQSTPVLLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 991

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 33/51 (64%), Positives = 39/51 (76%)
 Frame = -1

Query: 549  PKTITGFQTHTTPVLLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 397
            PKTITG+ T +TPVLL  GERAEL  D+YI  T+ +EG VILKKNP + EE
Sbjct: 932  PKTITGWITQSTPVLLGHGERAELENDEYISYTNNIEGVVILKKNPNFQEE 982

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 35/47 (74%), Positives = 37/47 (78%)
 Frame = -1

Query: 549 PKTITGFQTHTTPVLLAAGERAELATDKYIPLTSTLEGFVILKKNPE 409
           PK ITG+ THTTPVLL   ERAELAT+ Y PLTS LEG VILKKN E
Sbjct: 840 PKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKKNTE 885

>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 230 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 105
           CN  +S LV   D     TH+G  +GV    SF  +L+C+ +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427

>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 417  SSSELQSPPTWRSGECTCQSPILLAPP 497
            +  +  SP TW    C+CQ P  + PP
Sbjct: 1391 AQKKCDSPKTWDENSCSCQCPKNMRPP 1417

>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5|
          Length = 72

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 314 DDNLYLRACHAGELQKLASDQSLGGFPHSSWYSGFFFRITKPS 442
           DD  Y   C  G  ++L      GG+ + S + G+ +R  +PS
Sbjct: 19  DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,467,455
Number of Sequences: 219361
Number of extensions: 2144758
Number of successful extensions: 5773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5772
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)