>GLGB_HAEIN (P45177) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 730

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -2

Query: 300 FASLGIHQHPQGLEIRTL 247
           FA+LG+H+  QG+EIRTL
Sbjct: 22  FATLGMHETEQGIEIRTL 39

>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 322  FTHCQTLFRISWNSPTSPRLGNKNIAKVVG 233
            F    T FR+SW+   SP LG K + K VG
Sbjct: 2131 FDEWYTRFRVSWDPSPSPVLGYKIVYKPVG 2160

>SPB42_CANAL (Q59NP8) ATP-dependent rRNA helicase SPB42 (EC 3.6.1.-)|
          Length = 631

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
 Frame = -1

Query: 427 NSTQIKVLDE--------FRNTMINDLNIVEDKAGWGMFIDSCFTHCQTLFRISWNSPTS 272
           +S +I +LDE        F   +IN L  +  +   G+F  +  +   T+FR   N+P  
Sbjct: 175 SSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSATISSAGNTIFRTGMNNPVK 234

Query: 271 PRLGNKNIAKVVGDWYFG-RSQGVKEIDCQY 182
            ++ +KN        YFG +S   K +   Y
Sbjct: 235 VQVKSKN--------YFGEQSNSPKSLQLSY 257

>SPB41_CANAL (Q59N29) ATP-dependent rRNA helicase SPB41 (EC 3.6.1.-)|
          Length = 631

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
 Frame = -1

Query: 427 NSTQIKVLDE--------FRNTMINDLNIVEDKAGWGMFIDSCFTHCQTLFRISWNSPTS 272
           +S +I +LDE        F   +IN L  +  +   G+F  +  +   T+FR   N+P  
Sbjct: 175 SSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSATISSAGNTIFRTGMNNPVK 234

Query: 271 PRLGNKNIAKVVGDWYFG-RSQGVKEIDCQY 182
            ++ +KN        YFG +S   K +   Y
Sbjct: 235 VQVKSKN--------YFGEQSNSPKSLQLSY 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,806,823
Number of Sequences: 219361
Number of extensions: 1779470
Number of successful extensions: 4326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4326
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)