>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7124

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 216  LKSTCCWVLTTWVLGESSLMSPLQW-IFTYMQDSYIGAKFCVV 91
            +K TCCW+L + +L  S + + ++W +F Y+    +G   C +
Sbjct: 3589 VKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCAL 3631

>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7180

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 216  LKSTCCWVLTTWVLGESSLMSPLQW-IFTYMQDSYIGAKFCVV 91
            +K TCCW+L +  L  S + + ++W +F Y+    +G   C +
Sbjct: 3646 IKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCAL 3688

>SYI_RALEJ (Q46XM7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 963

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +2

Query: 251 FQGAKAKDHPAAGSLGSLQL*NLETGTVPAAGGLHLWDLETEATPIRACTNGVLSTHIIL 430
           FQ  KA        +  +    +  GT+P  GGL +WD   +   +   +  + ++H   
Sbjct: 356 FQSCKAHGMSDHDIISPVMGNGVYAGTLPLFGGLSIWDANPKIVEVLKASGNLFNSHKYT 415

Query: 431 HKWITDHGWK 460
           H ++  H W+
Sbjct: 416 HSYM--HCWR 423

>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7176

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 216  LKSTCCWVLTTWVLGESSLMSPLQW-IFTYMQDSYIGAKFCVV 91
            +K TCCW+L +  L  S + + ++W +F Y+    +G   C +
Sbjct: 3642 IKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCAL 3684


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,258,424
Number of Sequences: 219361
Number of extensions: 1726179
Number of successful extensions: 3639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3638
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)