ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11l17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_PONPY (Q5RFI5) Plasma alpha-L-fucosidase precursor (EC 3.2... 33 0.98
2FUCO2_HUMAN (Q9BTY2) Plasma alpha-L-fucosidase precursor (EC 3.2... 33 0.98
3XYNC_PSEFL (P23031) Alpha-L-arabinofuranosidase C precursor (EC ... 30 8.3

>FUCO2_PONPY (Q5RFI5) Plasma alpha-L-fucosidase precursor (EC 3.2.1.51)|
           (Alpha-L-fucosidase 2) (Alpha-L-fucoside fucohydrolase
           2)
          Length = 465

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +2

Query: 374 WQNVTARQL---YSAIHLGDETFIFLSWSVVQYP--GLVWFWFCLERHAFPNYRE 523
           W+++ ARQL   +     G    IF+ W V   P  G  WFW+  ++   P Y E
Sbjct: 36  WESLDARQLPAWFDQAKFG----IFIHWGVFSVPSFGSEWFWWYWQKEKIPKYVE 86



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>FUCO2_HUMAN (Q9BTY2) Plasma alpha-L-fucosidase precursor (EC 3.2.1.51)|
           (Alpha-L-fucosidase 2) (Alpha-L-fucoside fucohydrolase
           2)
          Length = 467

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +2

Query: 374 WQNVTARQL---YSAIHLGDETFIFLSWSVVQYP--GLVWFWFCLERHAFPNYRE 523
           W+++ ARQL   +     G    IF+ W V   P  G  WFW+  ++   P Y E
Sbjct: 38  WESLDARQLPAWFDQAKFG----IFIHWGVFSVPSFGSEWFWWYWQKEKIPKYVE 88



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>XYNC_PSEFL (P23031) Alpha-L-arabinofuranosidase C precursor (EC 3.2.1.55)|
           (Xylanase C)
          Length = 571

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 287 WIIKT*RHIYRTINRNEQIDYLYKSNLTNWQNVTARQLYSAIHLGD-ETFIFLSWSVVQY 463
           W+I    H Y   +R++ + Y+ K+ L N+ N +   +    H G+  +++F + +V + 
Sbjct: 451 WVICNDTHCYLYFSRDDGVLYVSKTTLANFPNFSGYSIVMEDHRGNGNSYLFEAANVYKL 510

Query: 464 PG 469
            G
Sbjct: 511 DG 512


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,723,620
Number of Sequences: 219361
Number of extensions: 1858670
Number of successful extensions: 3507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3505
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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