>ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein)
          Length = 1960

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
 Frame = -1

Query: 594 AEAFGGMAEEKGTLQAMRGWVVDHKLRAVGTLWLTGIAGSIAYNWSR---PGMKTSVKLI 424
           A+A GG  E K   Q+     +      V   WL     + A    R   P M       
Sbjct: 358 ADAHGGPTESKKDYQSEADLPIRSPFGIVKASWLPKFTQAGAQKMKRLPTPSMMNDYYAA 417

Query: 423 HARLHAQALTLAALGCSALVEYYDHQSGS---------GSKVHDYAKQFLPSERN 286
             R+     +L  + CS L ++  HQ+ S           +  D+  + LPS RN
Sbjct: 418 SPRIFPHLCSLCNVECSHLKDWIQHQNTSTHIESCRQLRQQYPDWNPEILPSRRN 472

>PIP1_YEAST (P40020) Polymerase-interacting protein 1 (Factor interacting with|
           REF)
          Length = 925

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 479 PAIPVSHSVPTARSLWSTTQPLIACSVPFSSAIPPKASAIRSSSPLR 619
           P+IPV HS P          PL   S P +S IPP+A + ++ S L+
Sbjct: 558 PSIPVEHSNPCTSIEIPKRSPLRFTSSPKTSDIPPEAQSPKNGSFLQ 604

>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 510 VGTLWLTGIAGSIAYNWSRPGMKTSVKLIHARLHAQALTLAALGCSALVEYY 355
           +G ++L G A  + Y   R   K + K++H  LH  A  +A +G  A+ +Y+
Sbjct: 60  IGLVFLQGDA-LLVYRVFRNEAKRTTKILHGLLHVLAFVIALVGLVAVFDYH 110

>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)|
          Length = 250

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 510 VGTLWLTGIAGSIAYNWSRPGMKTSVKLIHARLHAQALTLAALGCSALVEYY 355
           +G ++L G A  + Y   R   K + K++H  LH  A  +A +G  A+ +Y+
Sbjct: 58  IGMIFLQGDA-LLVYRVFRREAKRTTKILHGLLHVFAFIIALVGLVAVFDYH 108

>RDRP_PLRV1 (P17520) Putative RNA-directed RNA polymerase (EC 2.7.7.48) (69.6|
           kDa protein) (ORF 3)
          Length = 616

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = -1

Query: 663 TQAPVAEAHAQADWNRRGELDLIAEAFGGMAEEKGT--------LQAMRGWVVDHKLRAV 508
           T AP+    ++ DW   G    I EA   +  + G         L A RGWV DHKL  V
Sbjct: 232 TNAPLCSLKSKLDW--AGFQQDIREAVQSLELDAGVGIPYIAYGLPAHRGWVEDHKLLPV 289

Query: 507 GT 502
            T
Sbjct: 290 LT 291

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 376 TTQGSQRKGLSMKPGVDELDAGLHAGPGPVVRNRSRDPREPQRPYG 513
           T  G  RKG   +PG+  +  G+   PGP     S+ PR  + P G
Sbjct: 105 TNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKG 150

>Y883_CHLCV (Q821Q5) Hypothetical RNA methyltransferase CCA00883 (EC 2.1.1.-)|
          Length = 401

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -1

Query: 573 AEEKGTLQAMRGWVVDHKLRAVGTLWLTGIAGSIAYNWSRPGMKTSVKLIHAR-LHAQAL 397
           A EKG ++  +  +++  L  V  +W   ++   A  + R        LIH      Q L
Sbjct: 157 AVEKGIIEEWKNALINSSLPIVSIIWEEKVSAKNAPTYFRS------HLIHGEPFIKQTL 210

Query: 396 TLAALGCSALVE-----YYDHQSGSGSKVHDYAKQFL 301
           TL   G S +       ++  QS  G+K+ + AK+F+
Sbjct: 211 TLPKDGNSGVFHVRPRSFFQPQSLQGAKIIEIAKEFM 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,129,022
Number of Sequences: 219361
Number of extensions: 2041870
Number of successful extensions: 5783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5781
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)