ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11k23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ222774.1|HVJ222774 Hordeum vulgare mRNA for putative thiol protease, clone L8 Length = 382 Score = 743 bits (375), Expect = 0.0 Identities = 375/375 (100%) Strand = Plus / Minus Query: 77 tggggtacacaaatgaatagctaggtaccgtgcaattatttaatatttatatataaaggt 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 tggggtacacaaatgaatagctaggtaccgtgcaattatttaatatttatatataaaggt 323 Query: 137 atgcacggagtcacacagagatagatgatgatggaggtgccatcatatgatagggtaaac 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 atgcacggagtcacacagagatagatgatgatggaggtgccatcatatgatagggtaaac 263 Query: 197 cgggagcttggcaaggccgcacaagcccaagggcggcgagtccctaaggagatagatgaa 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 cgggagcttggcaaggccgcacaagcccaagggcggcgagtccctaaggagatagatgaa 203 Query: 257 gcctttgtcaccccacttggcagtccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 gcctttgtcaccccacttggcagtccacgagttcttaccgatccagtacttggtcccgtc 143 Query: 317 aggcttggtcccgtacccgacgagggccatcgcatggttctgcgcagtcttgcacgcccc 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 aggcttggtcccgtacccgacgagggccatcgcatggttctgcgcagtcttgcacgcccc 83 Query: 377 tttgatgtagacgccggacctggagcaaccggcgttgtacacgccgccgatgtagtgctg 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82 tttgatgtagacgccggacctggagcaaccggcgttgtacacgccgccgatgtagtgctg 23 Query: 437 gaagcaggggtcact 451 ||||||||||||||| Sbjct: 22 gaagcaggggtcact 8
>ref|XM_450799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1419 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 758 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 720
>ref|XM_506663.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027G10.55 mRNA Length = 1882 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 766 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 728
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 34567 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 34529
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 12867231 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 12867193 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Plus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| |||||||||||||||| ||||| Sbjct: 8298341 ccacgagttcttgacgatccagtacttggtgccgtc 8298376
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 12844937 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 12844975 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 281 ccacgagttcttaccgatccagtacttggt 310 ||||||||||||| |||||||||||||||| Sbjct: 22126327 ccacgagttcttaacgatccagtacttggt 22126356 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ccacgagttcttaccgatccagta 304 ||||||||||||| |||||||||| Sbjct: 22136831 ccacgagttcttaacgatccagta 22136854
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 152714 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 152752
>dbj|AP005312.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0505H05 Length = 152845 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 6921 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 6959
>dbj|AK071091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079N05, full insert sequence Length = 1419 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 758 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 720
>dbj|AK070060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041D01, full insert sequence Length = 1882 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 766 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 728
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 592 gtgtaggggtaggccgcctccgtggtgatgccaccgttc 630 ||||| |||||| ||||||||||||||| |||||||||| Sbjct: 12947438 gtgtacgggtagtccgcctccgtggtgaggccaccgttc 12947400 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Plus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| |||||||||||||||| ||||| Sbjct: 8369104 ccacgagttcttgacgatccagtacttggtgccgtc 8369139
>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042B15 Length = 157981 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 281 ccacgagttcttaccgatccagtacttggt 310 ||||||||||||| |||||||||||||||| Sbjct: 47820 ccacgagttcttaacgatccagtacttggt 47849 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ccacgagttcttaccgatccagta 304 ||||||||||||| |||||||||| Sbjct: 58324 ccacgagttcttaacgatccagta 58347
>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026D03 map near S2137, complete sequence Length = 115141 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| |||||||||||||||| ||||| Sbjct: 34059 ccacgagttcttgacgatccagtacttggtgccgtc 34024
>emb|X80876.1|OSCYSPRO O.sativa mRNA for cysteine protease Length = 1440 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| |||||||||||||||| ||||| Sbjct: 1071 ccacgagttcttgacgatccagtacttggtgccgtc 1036
>dbj|AK071495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099K03, full insert sequence Length = 1511 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| |||||||||||||||| ||||| Sbjct: 1077 ccacgagttcttgacgatccagtacttggtgccgtc 1042
>dbj|AB004648.1| Oryza sativa (japonica cultivar-group) RepA gene for cysteine endopeptidase, complete cds Length = 3836 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| |||||||||||||||| ||||| Sbjct: 2593 ccacgagttcttgacgatccagtacttggtgccgtc 2558
>ref|XM_759922.1| Theileria parva strain Muguga hypothetical protein (TP02_0449) partial mRNA Length = 2578 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 110 aattatttaatatttatatataa 132 ||||||||||||||||||||||| Sbjct: 2546 aattatttaatatttatatataa 2568
>gb|AY110563.1| Zea mays CL897_1 mRNA sequence Length = 794 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 587 tgccggtgtaggggtaggccgcctccgtggtgatgccaccgtt 629 |||| ||||| |||||| | ||||||||||||||||| ||||| Sbjct: 258 tgcccgtgtacgggtagtcggcctccgtggtgatgccgccgtt 216
>emb|Z97022.1|HVZ97022 Hordeum vulgare gene encoding cysteine proteinase Length = 5593 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 472 acgggctgctgcgccacggcctccttgagccccgcctcgttg 513 |||||||| |||||||||||| || | ||| ||||||||||| Sbjct: 4650 acgggctggtgcgccacggccgccatcagcgccgcctcgttg 4609 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||||| ||||||||||||||| ||||| Sbjct: 4810 ccacgagttcttcatgatccagtacttggtgccgtc 4775
>gb|AC011334.5| Homo sapiens chromosome 5 clone CTC-235N17, complete sequence Length = 134413 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 111 attatttaatatttatatataa 132 |||||||||||||||||||||| Sbjct: 10601 attatttaatatttatatataa 10580
>gb|AC011354.4|AC011354 Homo sapiens chromosome 5 clone CTC-354F19, complete sequence Length = 133042 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 111 attatttaatatttatatataa 132 |||||||||||||||||||||| Sbjct: 83622 attatttaatatttatatataa 83601
>emb|BX649289.11| Zebrafish DNA sequence from clone DKEY-231H5 in linkage group 20, complete sequence Length = 124708 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 attatttaatatttatatataa 132 |||||||||||||||||||||| Sbjct: 109111 attatttaatatttatatataa 109132
>gb|U48863.1|PCU48863 Petroselinum crispum pathogenesis-related protein (pr1-2) gene, promoter region and most of exon 1 Length = 1312 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 aattatttaatatttatatata 131 |||||||||||||||||||||| Sbjct: 244 aattatttaatatttatatata 265
>ref|NM_183860.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtacttg 308 ||||||||||||| |||||||||||||| Sbjct: 1000 tccacgagttcttggcgatccagtacttg 972
>gb|AC161798.6| Mus musculus chromosome 7, clone RP23-267I20, complete sequence Length = 182519 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 170616 tatttaatatttatatataaa 170596
>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence Length = 253151 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 195643 tatttaatatttatatataaa 195663
>gb|AY380826.1| Lymphocystis disease virus - isolate China, complete genome Length = 186250 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 aattatttaatatttatatataaag 134 |||| |||||||||||||||||||| Sbjct: 67750 aattttttaatatttatatataaag 67726
>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence Length = 219825 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 attatttaatatttatatata 131 ||||||||||||||||||||| Sbjct: 216486 attatttaatatttatatata 216466
>gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence Length = 250823 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 aattatttaatatttatatataaag 134 ||||||| ||||||||||||||||| Sbjct: 24 aattattaaatatttatatataaag 48
>gb|AE014820.1| Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 aattatttaatatttatatataaag 134 ||||||| ||||||||||||||||| Sbjct: 249993 aattattaaatatttatatataaag 250017
>emb|AL357293.16| Human DNA sequence from clone RP11-418K10 on chromosome 9, complete sequence Length = 104596 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 90310 tatttaatatttatatataaa 90290
>gb|AC116166.6| Homo sapiens chromosome 15, clone RP11-475F15, complete sequence Length = 174164 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 15028 tatttaatatttatatataaa 15008
>gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154016 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 acagagatagatgatgatgga 171 ||||||||||||||||||||| Sbjct: 110534 acagagatagatgatgatgga 110554
>gb|AF267914.1| Saccharomyces bayanus tRNA-Thr gene, partial sequence; and tRNA-Cys, tRNA-His, tRNA-Leu, tRNA-Gln, tRNA-Lys, tRNA-Arg, tRNA-Gly, tRNA-Asp, tRNA-Ser, tRNA-Arg, tRNA-Ala, tRNA-Ile, tRNA-Tyr, tRNA-Asn, and tRNA-Met genes, complete sequence; mitochondrial genes for mitochondrial products Length = 5219 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 aatatttatatataaaggtat 138 ||||||||||||||||||||| Sbjct: 1635 aatatttatatataaaggtat 1655
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ggcaattgccggccttgccgg 592 ||||||||||||||||||||| Sbjct: 3540986 ggcaattgccggccttgccgg 3541006 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 1351464 ttatttaatatttatatata 1351483
>gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome 13, complete sequence Length = 176432 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 tttatatataaaggtatgcac 142 ||||||||||||||||||||| Sbjct: 4520 tttatatataaaggtatgcac 4500
>gb|AC157782.7| Mus musculus chromosome 7, clone RP23-86L13, complete sequence Length = 167982 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 14155 tatttaatatttatatataaa 14135
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 613 gtggtgatgccaccgttcatg 633 ||||||||||||||||||||| Sbjct: 81182 gtggtgatgccaccgttcatg 81162
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtacttg 308 ||||||||||||| |||||||||||||| Sbjct: 12735937 tccacgagttcttggcgatccagtacttg 12735909 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 21029183 ttatttaatatttatatata 21029164 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 13843215 tccacgagttcttggcgatccagtactt 13843188 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 13821084 tccacgagttcttggcgatccagtactt 13821111 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttg 308 |||||||||||| |||||||||||||| Sbjct: 6400961 ccacgagttcttggcgatccagtacttg 6400934
>gb|AC012373.14|AC012373 Drosophila melanogaster, chromosome X, region 17B-17C, BAC clone BACR17H16, complete sequence Length = 182080 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 57849 tatttaatatttatatataaa 57829
>emb|BX571960.6| Zebrafish DNA sequence from clone DKEY-165I8 in linkage group 3, complete sequence Length = 192501 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatataa 132 ||||||||||||||||||||| Sbjct: 9131 ttatttaatatttatatataa 9111
>gb|AC090764.35| Homo sapiens chromosome 15, clone RP11-289D12, complete sequence Length = 137300 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 129336 tatttaatatttatatataaa 129316
>gb|AC135069.17| Homo sapiens chromosome 15, clone RP11-1081C20, complete sequence Length = 222726 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 108470 tatttaatatttatatataaa 108450
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtacttg 308 ||||||||||||| |||||||||||||| Sbjct: 16336 tccacgagttcttggcgatccagtacttg 16308
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtacttg 308 ||||||||||||| |||||||||||||| Sbjct: 102966 tccacgagttcttggcgatccagtacttg 102938
>emb|CT572986.11| Mouse DNA sequence from clone RP23-32M23 on chromosome 13, complete sequence Length = 76596 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 tttatatataaaggtatgcac 142 ||||||||||||||||||||| Sbjct: 37493 tttatatataaaggtatgcac 37473
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 ggcgttgtacacgccgccgatgtag 431 ||||||||||||||||| ||||||| Sbjct: 3025170 ggcgttgtacacgccgcggatgtag 3025194
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 497 tgagccccgcctcgttgccgg 517 ||||||||||||||||||||| Sbjct: 353549 tgagccccgcctcgttgccgg 353569
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete sequence Length = 315109 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 122273 tatttaatatttatatataaa 122253
>emb|BX000481.5| Zebrafish DNA sequence from clone CH211-13A4 in linkage group 5, complete sequence Length = 163926 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 30008 tatttaatatttatatataaa 30028
>emb|AL954699.4| Zebrafish DNA sequence from clone CH211-264H3 in linkage group 5, complete sequence Length = 143013 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataaa 133 ||||||||||||||||||||| Sbjct: 31265 tatttaatatttatatataaa 31285
>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete sequence Length = 200663 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 acagagatagatgatgatgga 171 ||||||||||||||||||||| Sbjct: 136747 acagagatagatgatgatgga 136767
>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete sequence Length = 208265 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 attatttaatatttatatata 131 ||||||||||||||||||||| Sbjct: 204926 attatttaatatttatatata 204906
>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence Length = 160884 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 106 gtgcaattatttaatatttatatat 130 ||||||||||||| ||||||||||| Sbjct: 93353 gtgcaattatttagtatttatatat 93377
>gb|AY493693.1| Gallus gallus SRY-related protein 4 (Sox4) mRNA, complete cds Length = 1489 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 664 ccgcggccgcagccatggtg 683 |||||||||||||||||||| Sbjct: 1 ccgcggccgcagccatggtg 20
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 caccgcgaccggcttgcccg 568 |||||||||||||||||||| Sbjct: 2331823 caccgcgaccggcttgcccg 2331804
>gb|AC154009.1| Mus musculus 6 NOVECTOR RP24-544G1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 140214 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 35258 ttatttaatatttatatata 35277 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 35235 ttatttaatatttatatata 35254
>ref|NM_188466.1| Oryza sativa (japonica cultivar-group), Ozsa8161 predicted mRNA Length = 1101 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttg 308 |||||||||||| |||||||||||||| Sbjct: 996 ccacgagttcttggcgatccagtacttg 969
>ref|XM_507329.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1150_A11.17 mRNA Length = 1437 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
>ref|XM_483741.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
>ref|NM_184003.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1086 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 982 tccacgagttcttggcgatccagtactt 955
>ref|NM_183997.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1086 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 982 tccacgagttcttggcgatccagtactt 955
>ref|XM_476541.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3072 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 666 gcggccgcagccatggtgga 685 |||||||||||||||||||| Sbjct: 1889 gcggccgcagccatggtgga 1908
>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence Length = 179325 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 75220 ttatttaatatttatatata 75201
>gb|AC009208.6| Drosophila melanogaster clone BACR31I21, complete sequence Length = 152443 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 7399 ttatttaatatttatatata 7380
>gb|AC150550.1| Drosophila melanogaster clone BACR21G13, complete sequence Length = 173358 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 132800 tacatacatacatagacatg 132819
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aattatttaatatttatatataaa 133 |||| ||||||||||||||||||| Sbjct: 72185 aattgtttaatatttatatataaa 72162
>gb|AC118640.8| Mus musculus chromosome 15, clone RP24-112A20, complete sequence Length = 179510 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tgatgatggaggtgccatca 181 |||||||||||||||||||| Sbjct: 132026 tgatgatggaggtgccatca 132007
>gb|AY962591.1| Candida metapsilosis strain MCO448 mitochondrion, complete genome Length = 24152 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 17358 atttaatatttatatataaa 17377
>gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome 3, complete sequence Length = 218807 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 13388 tacatacatacatagacatg 13369
>gb|AC123866.4| Mus musculus BAC clone RP23-124I3 from chromosome 8, complete sequence Length = 217446 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 69500 tatttaatatttatatataa 69519
>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9, complete sequence Length = 218171 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atatagattgtttatttatt 24 |||||||||||||||||||| Sbjct: 159685 atatagattgtttatttatt 159666
>gb|AC125330.5| Mus musculus BAC clone RP23-217A6 from chromosome 6, complete sequence Length = 182355 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 146734 ttatttaatatttatatata 146753 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 146711 ttatttaatatttatatata 146730
>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence Length = 177066 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 114683 tatttaatatttatatataa 114702
>emb|AJ011856.1|SCE011856 Saccharomyces cerevisiae complete mitochondrial genome Length = 85779 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 69986 ttatttaatatttatatata 69967
>emb|AL607082.9| Human DNA sequence from clone RP11-166O7 on chromosome 10, complete sequence Length = 75633 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aattatttaatatttatata 129 |||||||||||||||||||| Sbjct: 16134 aattatttaatatttatata 16153
>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete sequence Length = 236130 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttgtttatttattataggca 31 |||||||||||||||||||| Sbjct: 101015 ttgtttatttattataggca 100996
>emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chromosome 6 Contains part of the LAMA2 gene for laminin, alpha 2 (merosin, congenital muscular dystrophy) (LAMM), complete sequence Length = 91827 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aattatttaatatttatata 129 |||||||||||||||||||| Sbjct: 4656 aattatttaatatttatata 4637
>gb|AE014836.1| Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence Length = 250743 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 241955 ttatttaatatttatatata 241936 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 241849 ttatttaatatttatatata 241830 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 138986 ttatttaatatttatatata 139005
>emb|AL161448.16| Human DNA sequence from clone RP11-381H12 on chromosome 9 Contains the 5' end of the SHB gene for SHB (Src homology 2 domain containing) adaptor protein B and two CpG islands, complete sequence Length = 164857 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 144618 atttaatatttatatataaa 144637
>emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in linkage group 23, complete sequence Length = 110120 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aattatttaatatttatatataaa 133 |||| ||||||||||||||||||| Sbjct: 103835 aattctttaatatttatatataaa 103812
>emb|V00695.1|MISC14 Yeast mitochondrial tRNA genes (several, map positions 3.5 to 8.6) encoding tRNAs for Lys, Arg, Gly, Asp, Ser, Arg, and Ala Length = 3630 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 3593 ttatttaatatttatatata 3574
>gb|AC112163.7| Mus Musculus chromosome 13 BAC, clone MGS1-437011 ES cell line, Complete Sequence, complete sequence Length = 159042 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 agagatagatgatgatggag 172 |||||||||||||||||||| Sbjct: 58309 agagatagatgatgatggag 58328
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aattatttaatatttatata 129 |||||||||||||||||||| Sbjct: 1374034 aattatttaatatttatata 1374053
>emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in linkage group 14 Contains part of a novel gene similar to ATP8B1 (ATPase, Class I, type 8B, member 1), part of a novel gene similar to MCF2 (MCF.2 cell line derived transforming sequence) and two CpG islands, complete sequence Length = 174521 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 105137 ttatttaatatttatatata 105118
>emb|AL590388.4| Mouse DNA sequence from clone RP23-480B19 on chromosome 13 Contains the Slc17a1 gene for solute carrier family 17 (vesicular glutamate transporter) member 1, two genes for novel solute carrier family 17 (Slc17) members, two novel genes, the gene for a novel C3HC4 type zinc finger (ring finger) protein, the gene for an H2a, an H2b, two genes for H3 and two genes for H4 histone family members, a H2a histone family pseudogene, the H1f1 and H1f2 genes for H1 histone family members 1 and 2, the H3f2 gene for H3 histone family, member 2 (H3.2), a novel pseudogene, the Hfe gene for hemochromatosis protein (Mr2) and two CpG islands, complete sequence Length = 186062 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 120803 atttaatatttatatataaa 120822
>emb|AL035476.7|PFMAL4P3 Plasmodium falciparum MAL4P3 Length = 349751 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 aattatttaatatttatatataaa 133 ||||||||||||| |||||||||| Sbjct: 311259 aattatttaatatatatatataaa 311282
>gb|AC008114.25| Homo sapiens 12 BAC RP11-502N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126503 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 16856 tatttaatatttatatataa 16837
>emb|AL928834.15| Zebrafish DNA sequence from clone CH211-51E12 in linkage group 4 Contains the gene for a novel protein (zgc:56546), the gene for a novel protein similar to the Tctex-1 family, the gene for a novel protein similar to vertebrate tubby like protein 4 (TULP4), the gene for a novel protein similar to vertebrate mitochondrial ribosomal protein S10 (MRPS10), the 3' end of a novel gene, two novel genes and three CpG islands, complete sequence Length = 189764 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 113619 tatttaatatttatatataa 113600
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gccgcacaagcccaagggcg 231 |||||||||||||||||||| Sbjct: 2172568 gccgcacaagcccaagggcg 2172587
>gb|AC154350.3| Mus musculus BAC clone RP23-225B15 from chromosome 13, complete sequence Length = 213847 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 agagatagatgatgatggag 172 |||||||||||||||||||| Sbjct: 200837 agagatagatgatgatggag 200818
>emb|BX511181.13| Zebrafish DNA sequence from clone DKEY-100H5 in linkage group 24, complete sequence Length = 160005 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 68451 atttaatatttatatataaa 68470
>gb|AF448416.1| Zea mays B73 chromosome 9S bz genomic region Length = 106186 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aacctttacatacatacata 72 |||||||||||||||||||| Sbjct: 70584 aacctttacatacatacata 70565
>gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, complete sequence Length = 154272 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 attgtttatttattataggcaagg 34 |||||||||||| ||||||||||| Sbjct: 15718 attgtttatttactataggcaagg 15695
>emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 in linkage group 10, complete sequence Length = 162115 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 104460 tacatacatacatagacatg 104479
>gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, complete sequence Length = 197191 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 154932 atttaatatttatatataaa 154951
>gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, complete sequence Length = 188887 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 attgtttatttattataggcaagg 34 |||||||||||| ||||||||||| Sbjct: 17279 attgtttatttactataggcaagg 17302
>ref|NM_165422.1| Drosophila melanogaster CG2944-RF, transcript variant F (gus), mRNA Length = 1939 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 347 tacatacatacatagacatg 328
>ref|NM_165420.1| Drosophila melanogaster CG2944-RD, transcript variant D (gus), mRNA Length = 1855 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 347 tacatacatacatagacatg 328
>dbj|AK134322.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030414P12 product:unclassifiable, full insert sequence Length = 5121 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 2060 tacatacatacatagacatg 2079
>gb|L36887.1|YSCMTCG03 Saccharomyces cerevisiae mitochondrion transfer RNA- Leu, Gln, Lys, Arg, Gly, Asp, Ser2, Arg2, Ala, Ile, Tyr, Asn genes Length = 6340 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 4459 ttatttaatatttatatata 4440
>gb|AC100800.2| Homo sapiens chromosome 8, clone RP11-161I2, complete sequence Length = 196849 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ttaatatttatatataaagg 135 |||||||||||||||||||| Sbjct: 184714 ttaatatttatatataaagg 184695
>gb|AC090420.6| Homo sapiens chromosome 8, clone RP11-346L6, complete sequence Length = 216706 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ttaatatttatatataaagg 135 |||||||||||||||||||| Sbjct: 123843 ttaatatttatatataaagg 123824
>gb|AC008256.5| Drosophila melanogaster, chromosome 2R, region 41C-41E, BAC clone BACR11B14, complete sequence Length = 174999 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 118334 tacatacatacatagacatg 118353
>gb|AC013247.8| Drosophila melanogaster, chromosome 2R, region 41D-41E, BAC clone BACR06P07, complete sequence Length = 187793 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 177282 tacatacatacatagacatg 177263
>ref|XM_680321.1| PREDICTED: Danio rerio similar to Fras1 related extracellular matrix protein 1 (LOC557284), mRNA Length = 738 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tgtagtgctggaagcagggg 446 |||||||||||||||||||| Sbjct: 84 tgtagtgctggaagcagggg 103
>gb|AC099008.1| Drosophila melanogaster, chromosome 2R, region 50B-50C, BAC clone BACR16G12, complete sequence Length = 154681 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gcaattatttaatatttatatata 131 |||||||||| ||||||||||||| Sbjct: 125162 gcaattattttatatttatatata 125139
>gb|AC021231.8| Homo sapiens chromosome , clone RP11-323I15, complete sequence Length = 185062 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 atagacatggggtacacaaa 89 |||||||||||||||||||| Sbjct: 143728 atagacatggggtacacaaa 143709
>gb|AC008618.7| Homo sapiens chromosome 5 clone CTB-146E17, complete sequence Length = 139029 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 tagattgtttatttattataggca 31 |||||| ||||||||||||||||| Sbjct: 2625 tagattttttatttattataggca 2648
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 caccgcgaccggcttgcccg 568 |||||||||||||||||||| Sbjct: 2485574 caccgcgaccggcttgcccg 2485555
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 27868936 ccacgagttcctgacgatccagtacttggtgccgtc 27868901
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 666 gcggccgcagccatggtgga 685 |||||||||||||||||||| Sbjct: 1846270 gcggccgcagccatggtgga 1846251
>gb|AC024153.22| Homo sapiens 12 BAC RP13-359K18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 95516 tatttaatatttatatataa 95535
>gb|AC009250.3|AC009250 Drosophila melanogaster, chromosome 2L, region 36B-36B, BAC clone BACR27M18, complete sequence Length = 170362 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gcaattatttaatatttata 127 |||||||||||||||||||| Sbjct: 148403 gcaattatttaatatttata 148422
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 tgtagctcctgagcctcacc 552 |||||||||||||||||||| Sbjct: 58605 tgtagctcctgagcctcacc 58624
>gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complete sequence Length = 155011 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 19800 tatttaatatttatatataa 19781
>gb|AC008565.6|AC008565 Homo sapiens chromosome 5 clone CTC-538F12, complete sequence Length = 167086 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tagattgtttatttattataggca 31 |||||| ||||||||||||||||| Sbjct: 120648 tagattttttatttattataggca 120625
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 92385 ttatttaatatttatatata 92366
>gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, complete sequence Length = 166305 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aattatttaatatttatatataaa 133 |||||||||| ||||||||||||| Sbjct: 105998 aattatttaaaatttatatataaa 105975
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 cgacgggctgctgcgccacg 489 |||||||||||||||||||| Sbjct: 2415332 cgacgggctgctgcgccacg 2415351
>gb|AC093332.10| Homo sapiens chromosome 18, clone RP11-802O5, complete sequence Length = 112270 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 tgtagctcctgagcctcacc 552 |||||||||||||||||||| Sbjct: 1021 tgtagctcctgagcctcacc 1002
>gb|AF193835.1|AF193835 Oryza sativa LRK1 protein (LRK1) mRNA, complete cds Length = 3514 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 666 gcggccgcagccatggtgga 685 |||||||||||||||||||| Sbjct: 1994 gcggccgcagccatggtgga 2013
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttg 308 |||||||||||| |||||||||||||| Sbjct: 23356 ccacgagttcttggcgatccagtacttg 23329
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttg 308 |||||||||||| |||||||||||||| Sbjct: 172027 ccacgagttcttggcgatccagtacttg 172000
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 3517 tccacgagttcttggcgatccagtactt 3490
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 80618 tccacgagttcttggcgatccagtactt 80591 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 tccacgagttcttaccgatccagtactt 307 ||||||||||||| ||||||||||||| Sbjct: 58487 tccacgagttcttggcgatccagtactt 58514
>emb|BX649477.10| Zebrafish DNA sequence from clone CH211-265K4 in linkage group 5, complete sequence Length = 148317 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 92095 tatttaatatttatatataa 92114
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 666 gcggccgcagccatggtgga 685 |||||||||||||||||||| Sbjct: 50849 gcggccgcagccatggtgga 50830
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 666 gcggccgcagccatggtgga 685 |||||||||||||||||||| Sbjct: 98489 gcggccgcagccatggtgga 98470
>emb|BX247945.6| Zebrafish DNA sequence from clone CH211-209L14 in linkage group 24, complete sequence Length = 199345 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 89127 atttaatatttatatataaa 89146
>dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, complete sequence Length = 124898 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 74217 ttatttaatatttatatata 74236
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 77014 ccacgagttcctgacgatccagtacttggtgccgtc 76979
>dbj|AK105612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B06, full insert sequence Length = 1351 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 952 ccacgagttcctgacgatccagtacttggtgccgtc 917
>gb|AC154173.3| Mus musculus BAC clone RP23-3C4 from 3, complete sequence Length = 214016 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 165582 tacatacatacatagacatg 165563
>dbj|AK099308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144C09, full insert sequence Length = 1437 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
>dbj|AK072235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J24, full insert sequence Length = 1437 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttggtcccgtc 316 |||||||||| | |||||||||||||||| ||||| Sbjct: 1038 ccacgagttcctgacgatccagtacttggtgccgtc 1003
>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6, complete sequence Length = 170067 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 attatttaatatttatatat 130 |||||||||||||||||||| Sbjct: 56538 attatttaatatttatatat 56519
>gb|AC006196.3|AC006196 Homo sapiens, clone hRPK.1_A_1, complete sequence Length = 181949 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 caattatttaatatttatat 128 |||||||||||||||||||| Sbjct: 85787 caattatttaatatttatat 85806
>emb|CR356237.9| Zebrafish DNA sequence from clone CH211-219P7 in linkage group 22, complete sequence Length = 62455 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tgtagtgctggaagcagggg 446 |||||||||||||||||||| Sbjct: 29657 tgtagtgctggaagcagggg 29676
>emb|BX890562.8| Zebrafish DNA sequence from clone CH211-222H17 in linkage group 4, complete sequence Length = 195554 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tatttaatatttatatataa 132 |||||||||||||||||||| Sbjct: 87942 tatttaatatttatatataa 87961
>gb|AE003652.2| Drosophila melanogaster chromosome 2L, section 61 of 83 of the complete sequence Length = 262525 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gcaattatttaatatttata 127 |||||||||||||||||||| Sbjct: 203422 gcaattatttaatatttata 203403
>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete sequence Length = 281782 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 154864 ttatttaatatttatatata 154845
>gb|AE003817.3| Drosophila melanogaster chromosome 2R, section 33 of 73 of the complete sequence Length = 265472 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gcaattatttaatatttatatata 131 |||||||||| ||||||||||||| Sbjct: 229059 gcaattattttatatttatatata 229082
>gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 of 73 of the complete sequence Length = 294609 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 43677 tacatacatacatagacatg 43696
>gb|AC005643.1|AC005643 Drosophila melanogaster, chromosome 2R, region 50C5-50C8, P1 clone DS02972, complete sequence Length = 80389 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gcaattatttaatatttatatata 131 |||||||||| ||||||||||||| Sbjct: 15806 gcaattattttatatttatatata 15783
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aacctttacatacatacata 72 |||||||||||||||||||| Sbjct: 54616 aacctttacatacatacata 54597
>gb|U32430.1|TAU32430 Triticum aestivum thiol protease mRNA, complete cds Length = 1353 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ccacgagttcttaccgatccagtacttg 308 |||||||||||| |||||||||||||| Sbjct: 1038 ccacgagttcttggcgatccagtacttg 1011
>gb|AC154012.5| Mus musculus 6 BAC RP24-496L23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 116902 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 attatttaatatttatatat 130 |||||||||||||||||||| Sbjct: 40902 attatttaatatttatatat 40921
>emb|AL805930.16| Mouse DNA sequence from clone RP23-455B8 on chromosome 4, complete sequence Length = 174746 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 atatttatatataaaggtat 138 |||||||||||||||||||| Sbjct: 87173 atatttatatataaaggtat 87154
>gb|AC140844.3| Mus musculus BAC clone RP24-361P18 from 13, complete sequence Length = 132297 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 agagatagatgatgatggag 172 |||||||||||||||||||| Sbjct: 13172 agagatagatgatgatggag 13153
>emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, complete sequence Length = 142570 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 aattatttaatatttatatataaa 133 |||| ||||||||||||||||||| Sbjct: 58751 aattctttaatatttatatataaa 58728
>gb|AC170086.2| Mus musculus BAC clone RP24-127E11 from chromosome 13, complete sequence Length = 167543 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 agagatagatgatgatggag 172 |||||||||||||||||||| Sbjct: 69272 agagatagatgatgatggag 69253
>emb|X06047.1|MISCTRNA Yeast mitochondrial tRNA genes for tRNA-Ala, tRNA-Tyr and tRNA-Ile Length = 1847 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttatttaatatttatatata 131 |||||||||||||||||||| Sbjct: 519 ttatttaatatttatatata 500
>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH020D15, complete sequence Length = 143633 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 atttaatatttatatataaa 133 |||||||||||||||||||| Sbjct: 6904 atttaatatttatatataaa 6885
>emb|AL772402.5| Mouse DNA sequence from clone RP23-65J9 on chromosome 11, complete sequence Length = 242502 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 3194 tacatacatacatagacatg 3213
>emb|AL732564.12| Mouse DNA sequence from clone RP23-442G9 on chromosome 2, complete sequence Length = 211657 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tacatacatacatagacatg 78 |||||||||||||||||||| Sbjct: 173078 tacatacatacatagacatg 173059
>gb|M77350.1|MUSMHKA1A Mouse hair keratin A1 (MHKA1) gene, complete cds Length = 8061 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggaggtgccatcatatgata 188 |||||||||||||||||||| Sbjct: 5090 ggaggtgccatcatatgata 5109
>emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on chromosome 11, complete sequence Length = 142565 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ggaggtgccatcatatgata 188 |||||||||||||||||||| Sbjct: 122541 ggaggtgccatcatatgata 122522 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,253,425 Number of Sequences: 3902068 Number of extensions: 6253425 Number of successful extensions: 346502 Number of sequences better than 10.0: 159 Number of HSP's better than 10.0 without gapping: 164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 343868 Number of HSP's gapped (non-prelim): 2634 length of query: 699 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 676 effective length of database: 17,143,297,704 effective search space: 11588869247904 effective search space used: 11588869247904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
