ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11k22 |
|---|---|
| Clone Library Name | barley_pub |
>SINA5_ARATH (Q8S3N1) Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia| homolog 5) Length = 309 Score = 240 bits (613), Expect = 3e-63 Identities = 111/127 (87%), Positives = 119/127 (93%) Frame = -3 Query: 719 FNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKN 540 FNHRYVKSNP EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+ +A+N Sbjct: 168 FNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARN 227 Query: 539 YTYSLEVGGINRKMTWQGIPRSIRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 YTYSLEVGG RK TW+G PRS+RDSHRKVRDS+DGLIIQRNMAL FSGGD+KELKLRVT Sbjct: 228 YTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVT 287 Query: 359 GRIWKEQ 339 GRIWKEQ Sbjct: 288 GRIWKEQ 294
>SINA3_ARATH (Q84JL3) Ubiquitin ligase SINAT3 (EC 6.3.2.-) (Seven in absentia| homolog 3) Length = 326 Score = 240 bits (612), Expect = 4e-63 Identities = 111/127 (87%), Positives = 118/127 (92%) Frame = -3 Query: 719 FNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKN 540 FNHRYVKSNP EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+ EA+N Sbjct: 185 FNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARN 244 Query: 539 YTYSLEVGGINRKMTWQGIPRSIRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 Y YSLEVGG RK+ W+G PRS+RDSHRKVRDS+DGLIIQRNMAL FSGGDRKELKLRVT Sbjct: 245 YNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 304 Query: 359 GRIWKEQ 339 GRIWKEQ Sbjct: 305 GRIWKEQ 311
>SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven in absentia| homolog 4) Length = 327 Score = 235 bits (599), Expect = 1e-61 Identities = 109/127 (85%), Positives = 118/127 (92%) Frame = -3 Query: 719 FNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKN 540 FNHRYVKSNP EVENATWMLTVF CFGQYFCLHFEAFQLGM PVY+AFLRFMGD+ +A++ Sbjct: 186 FNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARS 245 Query: 539 YTYSLEVGGINRKMTWQGIPRSIRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 Y+YSLEVGG RK+TW+G PRSIRDSHRKVRDS DGLIIQRNMAL FSGGDRKELKLRVT Sbjct: 246 YSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVT 305 Query: 359 GRIWKEQ 339 G+IWKEQ Sbjct: 306 GKIWKEQ 312
>SINA2_ARATH (Q9M2P4) Ubiquitin ligase SINAT2 (EC 6.3.2.-) (Seven in absentia| homolog 2) Length = 308 Score = 231 bits (590), Expect = 1e-60 Identities = 108/127 (85%), Positives = 118/127 (92%) Frame = -3 Query: 719 FNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKN 540 FNHRYVKSNPHEVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVY+AFLRFMGD+ EAK Sbjct: 182 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 241 Query: 539 YTYSLEVGGINRKMTWQGIPRSIRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 ++YSLEVG RK+TWQGIPRSIRDSHRKVRDS DGLII RN+AL FSGGDR+ELKLRVT Sbjct: 242 FSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVT 301 Query: 359 GRIWKEQ 339 GRIWKE+ Sbjct: 302 GRIWKEE 308
>SINA1_ARATH (P93748) Putative ubiquitin ligase SINAT1 (EC 6.3.2.-) (Seven in| absentia homolog 1) Length = 305 Score = 228 bits (582), Expect = 1e-59 Identities = 106/127 (83%), Positives = 118/127 (92%) Frame = -3 Query: 719 FNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKN 540 FNHRYVKSNPHEVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVY+AFLRFMGD+ EAK Sbjct: 179 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 238 Query: 539 YTYSLEVGGINRKMTWQGIPRSIRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 ++YSLEVG +RK+TWQGIPRSIRDSHRKVRDS DGLII RN+AL FSG D++ELKLRVT Sbjct: 239 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 298 Query: 359 GRIWKEQ 339 GRIWKE+ Sbjct: 299 GRIWKEE 305
>SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 54.3 bits (129), Expect = 4e-07 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G EA+N+ Y LE+ G R++TW+ +PRS Sbjct: 215 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 274 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I + + D L+ ++A F+ D L + VT Sbjct: 275 IHEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 310
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 54.3 bits (129), Expect = 4e-07 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G EA+N+ Y LE+ G R++TW+ +PRS Sbjct: 215 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 274 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I + + D L+ ++A F+ D L + VT Sbjct: 275 IHEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 310
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 54.3 bits (129), Expect = 4e-07 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G EA+N+ Y LE+ G R++TW+ +PRS Sbjct: 215 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 274 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I + + D L+ ++A F+ D L + VT Sbjct: 275 IHEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 310
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 54.3 bits (129), Expect = 4e-07 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G EA+N+ Y LE+ G R++TW+ +PRS Sbjct: 232 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 291 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I + + D L+ ++A F+ D L + VT Sbjct: 292 IHEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 327
>SINA_SCHMA (Q86MW9) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| homolog) (SmSINA) Length = 371 Score = 53.1 bits (126), Expect = 8e-07 Identities = 27/85 (31%), Positives = 42/85 (49%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRSI 471 SCFG F L E + ++ A ++ +G +A + Y LE+ G R++TW+ PRSI Sbjct: 268 SCFGHSFMLVLEKQERVPDQIFFALVQLIGTRKQADQFVYRLELNGHRRRLTWEACPRSI 327 Query: 470 RDSHRKVRDSYDGLIIQRNMALCFS 396 D + D L+ N A F+ Sbjct: 328 HDGVQSAIAVSDCLVFDSNTAHSFA 352
>SIAH2_BRARE (Q7SYL3) Ubiquitin ligase Siah2 (EC 6.3.2.-) (Seven in absentia| homolog 2-like) (Siah-2) Length = 331 Score = 50.8 bits (120), Expect = 4e-06 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQLGMA-PVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A + +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 232 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 291 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I D + D L+ ++A F+ D L + VT Sbjct: 292 IHDGVAAAIMNSDCLVFDTSIAHLFA--DNGNLGINVT 327
>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) Length = 325 Score = 49.7 bits (117), Expect = 9e-06 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQLGMA-PVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A + +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 224 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 283 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I D + D L+ +A F+ D L + VT Sbjct: 284 IHDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 319
>SIAH2_MOUSE (Q06986) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (mSiah2) Length = 325 Score = 49.7 bits (117), Expect = 9e-06 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQLGMA-PVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A + +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 224 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 283 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I D + D L+ +A F+ D L + VT Sbjct: 284 IHDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 319
>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (hSiah2) Length = 324 Score = 49.7 bits (117), Expect = 9e-06 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQLGMA-PVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A + +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 223 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 282 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 I D + D L+ +A F+ D L + VT Sbjct: 283 IHDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 318
>SINAL_DROME (Q8T3Y0) Probable ubiquitin ligase sina-like protein CG13030 (EC| 6.3.2.-) Length = 351 Score = 48.9 bits (115), Expect = 2e-05 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = -3 Query: 683 VENATWMLTVFSCFGQYFCLHFEAFQLGM-APVYIAFLRFMGDDAEAKNYTYSLEVGGIN 507 +E A V SC G++F L E LG Y R +G +A + Y++ + N Sbjct: 237 LEGALDWTMVQSCHGRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYN 296 Query: 506 RKMTWQGIPRSIRDSHRKVRDSYDGLIIQRNMALCFS 396 R + WQ PRSIR++ ++ D L++ ++ FS Sbjct: 297 RTLRWQSKPRSIRENFSSFTNA-DFLVLNKHTVELFS 332
>SIAH1_RAT (Q920M9) Ubiquitin ligase SIAH1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) (Siah-1a) Length = 282 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 183 SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRS 242 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFS 396 I + + D L+ ++A F+ Sbjct: 243 IHEGIATAIMNSDCLVFDTSIAQLFA 268
>SIAH1_HUMAN (Q8IUQ4) Ubiquitin ligase SIAH1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) (Siah-1a) Length = 282 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 183 SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRS 242 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFS 396 I + + D L+ ++A F+ Sbjct: 243 IHEGIATAIMNSDCLVFDTSIAQLFA 268
>SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) Length = 282 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 183 SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRS 242 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFS 396 I + + D L+ ++A F+ Sbjct: 243 IHEGIATAIMNSDCLVFDTSIAQLFA 268
>SIA1B_MOUSE (Q06985) Ubiquitin ligase SIAH1B (EC 6.3.2.-) (Seven in absentia| homolog 1b) (Siah1b) (Siah-1b) Length = 282 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 183 SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRS 242 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFS 396 I + + D L+ ++A F+ Sbjct: 243 IHEGIATAIMNSDCLVFDTSIAQLFA 268
>SIA1A_MOUSE (P61092) Ubiquitin ligase SIAH1A (EC 6.3.2.-) (Seven in absentia| homolog 1a) (Siah1a) (Siah-1a) (mSiah-1a) Length = 282 Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ-LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGIPRS 474 SCFG +F L E + + A ++ +G +A+N+ Y LE+ G R++TW+ PRS Sbjct: 183 SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRS 242 Query: 473 IRDSHRKVRDSYDGLIIQRNMALCFS 396 I + + D L+ ++A F+ Sbjct: 243 IHEGIATAIMNSDCLVFDTSIAQLFA 268
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 48.1 bits (113), Expect = 3e-05 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = -3 Query: 668 WMLTVFSCFGQYFCLHFEAFQLGMA-PVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTW 492 W++ + CF +F L E + + A + +G +A+NY Y LE+ G R++TW Sbjct: 207 WVMMQY-CFNHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENYAYRLELNGNRRRLTW 265 Query: 491 QGIPRSIRDSHRKVRDSYDGLIIQRNMALCFSGGDRKELKLRVT 360 + PRSI D + D L+ +A F+ D L + VT Sbjct: 266 EATPRSIHDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 307
>SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven in absentia| homolog 1) Length = 339 Score = 42.7 bits (99), Expect = 0.001 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Frame = -3 Query: 650 SCFGQYFCLHFEAFQ----LGMAPVYIAFLRFMGDDAEAKNYTYSLEVGGINRKMTWQGI 483 SCF F L E + ++ A ++ +G EA N+ Y LE+ R+M+W+ Sbjct: 232 SCFDYNFMLVLEKQEKYDPAQPTQMFYAVVQLIGSKKEADNFVYRLELSASRRRMSWEAT 291 Query: 482 PRSIRDSHRKVRDSYDGLIIQRNMALCFS 396 PRSI + D L N A F+ Sbjct: 292 PRSIHEGVVVAIQQSDCLAFDSNAAQLFA 320
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 31.2 bits (69), Expect = 3.3 Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 11/124 (8%) Frame = +3 Query: 57 FTVHEPPARQQDVTKTALVQSR--TGDLPSALPHQYHLNPHHNRPWKHLRTNN----S*D 218 FT PP Q ++L+ S T LPS + HL+P HN L T+N Sbjct: 774 FTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGP 833 Query: 219 GLHTIAPSPKS*STPRGGSLTRYFGSSPEHTAFFSISHSSLFLPDPPG-----DPQLELL 383 LH P P S + SL P FS + + P G +P L+LL Sbjct: 834 QLHHSNPPPASRQSLGQASL------GPTGELAFSPATGVMGPPSMSGAGEAPEPALDLL 887 Query: 384 PVAT 395 P T Sbjct: 888 PELT 891
>KALM_CHICK (P33005) Anosmin-1 precursor (Kallmann syndrome protein homolog)| Length = 675 Score = 31.2 bits (69), Expect = 3.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 120 RTGDLPSALPHQYHLNPHHNRPWK 191 RT DLP LPH+ HL HH +K Sbjct: 646 RTPDLPPFLPHRPHLKQHHPHHYK 669
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 30.8 bits (68), Expect = 4.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 357 PGDPQLELLPVATGEAQGHVALDDEPVVA 443 PG PQ + L A E QGH D +PV+A Sbjct: 676 PGSPQAKSLQPAVAEKQGHQWKDSDPVMA 704
>PO3F4_RAT (P62516) POU domain, class 3, transcription factor 4| (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4) (RHS2 class III POU protein) Length = 361 Score = 30.4 bits (67), Expect = 5.7 Identities = 35/124 (28%), Positives = 41/124 (33%) Frame = +3 Query: 18 HRYESLH*RGATSFTVHEPPARQQDVTKTALVQSRTGDLPSALPHQYHLNPHHNRPWKHL 197 H SL G S T+ P QQDV + PH H +PH N P Sbjct: 56 HWVTSLSDGGPWSSTLATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHP---- 111 Query: 198 RTNNS*DGLHTIAPSPKS*STPRGGSLTRYFGSSPEHTAFFSISHSSLFLPDPPGDPQLE 377 +P+P S T G L Y S P T + H L P P Sbjct: 112 -------NAWGASPAPNSSITSSGQPLNVY--SQPGFTVSGMLEHGGL-TPPPAAASTQS 161 Query: 378 LLPV 389 L PV Sbjct: 162 LHPV 165
>PO3F4_MOUSE (P62515) POU domain, class 3, transcription factor 4| (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4) Length = 361 Score = 30.4 bits (67), Expect = 5.7 Identities = 35/124 (28%), Positives = 41/124 (33%) Frame = +3 Query: 18 HRYESLH*RGATSFTVHEPPARQQDVTKTALVQSRTGDLPSALPHQYHLNPHHNRPWKHL 197 H SL G S T+ P QQDV + PH H +PH N P Sbjct: 56 HWVTSLSDGGPWSSTLATSPLDQQDVKPGREDLQLGAIIHHRSPHVAHHSPHTNHP---- 111 Query: 198 RTNNS*DGLHTIAPSPKS*STPRGGSLTRYFGSSPEHTAFFSISHSSLFLPDPPGDPQLE 377 +P+P S T G L Y S P T + H L P P Sbjct: 112 -------NAWGASPAPNSSITSSGQPLNVY--SQPGFTVSGMLEHGGL-TPPPAAASTQS 161 Query: 378 LLPV 389 L PV Sbjct: 162 LHPV 165
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.4 bits (67), Expect = 5.7 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Frame = +3 Query: 177 NRPWKHLRTNNS*DGLHTIAPSPKS*STPRGGSLTRYFGSSPEHTAFFSISHSSLFLPDP 356 +RP HLR L + P P + T GS T G S F S+ PD Sbjct: 1823 DRPALHLRIPPQPGALGS--PPPAAAPTIFIGSPTTPAGLSTSADGFLKPPAGSVPGPDS 1880 Query: 357 PGDPQLELLPVATGEAQGHVALDDEPVVAV-PHFPVAIPDAP 479 PG+ L+L P +A P + P FP A P P Sbjct: 1881 PGELFLKLPPQVPAQAPSQDPFGLAPAYPLEPRFPTAPPTYP 1922
>GATA2_XENLA (P23770) GATA-binding factor 2 (GATA-2) (Transcription factor| xGATA-2) Length = 452 Score = 29.6 bits (65), Expect = 9.7 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = +3 Query: 171 HHNRPWKHLRTNNS*DGLHTIAPSPKS*STP--RGGSLTRYFGSSPEHTAFFSISHSSLF 344 HH+ PW T++P K+ P RGGSL GSS ++ S H F Sbjct: 109 HHHNPW-------------TVSPFGKAPLHPAARGGSLYPGTGSSACPSSSHSSPHLFGF 155 Query: 345 LPDPPGD 365 P PP D Sbjct: 156 PPTPPKD 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,211,137 Number of Sequences: 219361 Number of extensions: 2329825 Number of successful extensions: 6146 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6133 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7366267610 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
