ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11k20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit... 636 e-179
2dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 8e-68
3ref|XM_478436.1| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
4ref|XM_463920.1| Oryza sativa (japonica cultivar-group), mRNA 218 2e-53
5gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subu... 218 2e-53
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
7dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
8dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
10dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
11gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subu... 202 1e-48
12gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence 125 2e-25
13gb|AY108580.1| Zea mays PCO078974 mRNA sequence 125 2e-25
14emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C2... 44 0.53
15ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726 ... 42 2.1
16emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 42 2.1
17gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complet... 40 8.3
18gb|AY639544.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 1... 40 8.3
19gb|AY639543.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 1... 40 8.3
20gb|AY639542.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100501 1... 40 8.3
21emb|AJ884762.1| Gigaspora rosea dispersed repeat GrosRE3-T3, clo... 40 8.3
22emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chr... 40 8.3
23emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chro... 40 8.3
24gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, co... 40 8.3
25gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.3
26gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, com... 40 8.3
27gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, com... 40 8.3
28gb|AY953190.1| Uncultured anaerobic bacterium clone A-2A 16S rib... 40 8.3
29gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 8.3
30gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, compl... 40 8.3
31dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.3
32emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chr... 40 8.3
33dbj|AB029488.1| Homo sapiens C11orf21 mRNA, complete cds 40 8.3 
>gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit 3 mRNA, partial
           cds
          Length = 399

 Score =  636 bits (321), Expect = e-179
 Identities = 374/392 (95%)
 Strand = Plus / Minus

                                                                       
Query: 161 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 340

                                                                       
Query: 221 cagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttctt 280
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 339 cagcgcagcgccaaatatacggtgtgagatggagaacgtagcgctcagctgtggcttctt 280

                                                                       
Query: 281 cagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttgt 340
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 279 cagaggaagatggggagacagtgggcggttcgcaacaggagtcgacaggggacgacttgt 220

                                                                       
Query: 341 atgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaaga 400
           ||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||||||
Sbjct: 219 atgcagggatcggtttccagatggaggcatcttctgtcgcagagctcctaagggagaaga 160

                                                                       
Query: 401 tgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttgaa 460
           |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 159 tgtgtagctccttgcttgcccaatgcttgaggagtgtctaaggccatccatgttgttgaa 100

                                                                       
Query: 461 agacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtgc 520
           ||||||||||| ||||||||  ||||||||||||||||||||||| | | ||||||||||
Sbjct: 99  agacgagttggaggtaccaaaggcaccacggagagcaaatggagcgtntatcaggggtgc 40

                                           
Query: 521 aaagcgggtgttgctgtgatacttgtccattc 552
           |||||||||| |||||||||||||||||||||
Sbjct: 39  aaagcgggtgctgctgtgatacttgtccattc 8
to top
>dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D05, full
           insert sequence
          Length = 595

 Score =  266 bits (134), Expect = 8e-68
 Identities = 329/394 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
           ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 502 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 443

                                                                       
Query: 220 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
           |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 442 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 383

                                                                       
Query: 280 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
           ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 tcaaagggagatggggtgacagtgggcggttcgcaacaggagccgacaggggacgacttg 323

                                                                       
Query: 340 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 399
           | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 322 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 263

                                                                       
Query: 400 atgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttga 459
           ||||||||||| | ||||| |||   | |||||| ||||| ||   ||| ||||||||||
Sbjct: 262 atgtgtagctcctagcttgtccagaacttgaggattgtctcagatgatctatgttgttga 203

                                                                       
Query: 460 aagacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtg 519
           | || ||||| | | ||||||  ||||| |||||||||||||||||||| || |||||||
Sbjct: 202 aggatgagtttgagctaccaagggcaccgcggagagcaaatggagcatcactgaggggtg 143

                                             
Query: 520 caaagcgggtgttgctgtgatacttgtccattcc 553
           |||| ||||  ||||| || ||||| ||||||||
Sbjct: 142 caaaccgggccttgctctggtacttctccattcc 109
to top
>ref|XM_478436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 595

 Score =  258 bits (130), Expect = 2e-65
 Identities = 328/394 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
           ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 502 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 443

                                                                       
Query: 220 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
           |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 442 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 383

                                                                       
Query: 280 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
           ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 382 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 323

                                                                       
Query: 340 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 399
           | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 322 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 263

                                                                       
Query: 400 atgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttga 459
           ||||||||||| | ||||| |||   | |||||| ||||| ||   ||| ||||||||||
Sbjct: 262 atgtgtagctcctagcttgtccagaacttgaggattgtctcagatgatctatgttgttga 203

                                                                       
Query: 460 aagacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtg 519
           | || ||||| | | ||||||  ||||| |||||||||||||||||||| || |||||||
Sbjct: 202 aggatgagtttgagctaccaagggcaccgcggagagcaaatggagcatcactgaggggtg 143

                                             
Query: 520 caaagcgggtgttgctgtgatacttgtccattcc 553
           |||| ||||  ||||| || ||||| ||||||||
Sbjct: 142 caaaccgggccttgctctggtacttctccattcc 109
to top
>ref|XM_463920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 744

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                       
Query: 160 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
           ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 557 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 498

                                                                       
Query: 220 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
           ||| |||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 497 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 438

                                                                       
Query: 280 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
           |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 437 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 378

                                             
Query: 340 tatgtagggatcggtttccagatggaggcatctt 373
           | || |||| ||||  |||||||||  |||||||
Sbjct: 377 tgtgcaggggtcggcatccagatgggagcatctt 344



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                       
Query: 483 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 542
           ||||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||
Sbjct: 234 gcaccacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatac 175

                       
Query: 543 ttgtccattcct 554
           || |||||||||
Sbjct: 174 ttctccattcct 163
to top
>gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene, complete
            cds; nuclear gene for mitochondrial product
          Length = 2864

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                        
Query: 160  ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
            ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 2660 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 2601

                                                                        
Query: 220  ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
            ||| |||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 2600 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 2541

                                                                        
Query: 280  tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
            |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 2540 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 2481

                                              
Query: 340  tatgtagggatcggtttccagatggaggcatctt 373
            | || |||| ||||  |||||||||  |||||||
Sbjct: 2480 tgtgcaggggtcggcatccagatgggagcatctt 2447



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 485  accacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatactt 544
            ||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||||
Sbjct: 1656 accacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatactt 1597

                      
Query: 545  gtccattcct 554
             |||||||||
Sbjct: 1596 ctccattcct 1587
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                           
Query: 160     ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
               ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 1154066 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 1154007

                                                                           
Query: 220     ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
               ||| |||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 1154006 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 1153947

                                                                           
Query: 280     tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
               |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 1153946 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 1153887

                                                 
Query: 340     tatgtagggatcggtttccagatggaggcatctt 373
               | || |||| ||||  |||||||||  |||||||
Sbjct: 1153886 tgtgcaggggtcggcatccagatgggagcatctt 1153853



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                           
Query: 485     accacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatactt 544
               ||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||||
Sbjct: 1153062 accacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatactt 1153003

                         
Query: 545     gtccattcct 554
                |||||||||
Sbjct: 1153002 ctccattcct 1152993
to top
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1020_C02
          Length = 124578

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                          
Query: 160    ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
              ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 106590 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 106531

                                                                          
Query: 220    ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
              ||| |||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 106530 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 106471

                                                                          
Query: 280    tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
              |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 106470 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 106411

                                                
Query: 340    tatgtagggatcggtttccagatggaggcatctt 373
              | || |||| ||||  |||||||||  |||||||
Sbjct: 106410 tgtgcaggggtcggcatccagatgggagcatctt 106377



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                          
Query: 485    accacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatactt 544
              ||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||||
Sbjct: 105586 accacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatactt 105527

                        
Query: 545    gtccattcct 554
               |||||||||
Sbjct: 105526 ctccattcct 105517
to top
>dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124C12, full
           insert sequence
          Length = 744

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                       
Query: 160 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
           ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 557 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 498

                                                                       
Query: 220 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
           ||| |||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 497 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 438

                                                                       
Query: 280 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
           |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 437 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 378

                                             
Query: 340 tatgtagggatcggtttccagatggaggcatctt 373
           | || |||| ||||  |||||||||  |||||||
Sbjct: 377 tgtgcaggggtcggcatccagatgggagcatctt 344



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                       
Query: 483 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 542
           ||||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||
Sbjct: 234 gcaccacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatac 175

                       
Query: 543 ttgtccattcct 554
           || |||||||||
Sbjct: 174 ttctccattcct 163
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                            
Query: 160      ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
                ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 20075069 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 20075010

                                                                            
Query: 220      ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
                |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 20075009 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 20074950

                                                                            
Query: 280      tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
                ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 20074949 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 20074890

                                                                            
Query: 340      tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 399
                | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 20074889 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 20074830

                           
Query: 400      atgtgtagctc 410
                |||||||||||
Sbjct: 20074829 atgtgtagctc 20074819



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 489      cggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatacttgtcc 548
                |||||||||||||||||||| || ||||||||||| ||||  ||||| || ||||| |||
Sbjct: 20074366 cggagagcaaatggagcatcactgaggggtgcaaaccgggccttgctctggtacttctcc 20074307

                      
Query: 549      attcct 554
                ||||||
Sbjct: 20074306 attcct 20074301
to top
>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                         
Query: 160   ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 219
             ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 39672 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 39613

                                                                         
Query: 220   ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 279
             |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct: 39612 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 39553

                                                                         
Query: 280   tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 339
             ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 39552 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 39493

                                                                         
Query: 340   tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 399
             | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 39492 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 39433

                        
Query: 400   atgtgtagctc 410
             |||||||||||
Sbjct: 39432 atgtgtagctc 39422



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 489   cggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatacttgtcc 548
             |||||||||||||||||||| || ||||||||||| ||||  ||||| || ||||| |||
Sbjct: 38969 cggagagcaaatggagcatcactgaggggtgcaaaccgggccttgctctggtacttctcc 38910

                   
Query: 549   attcct 554
             ||||||
Sbjct: 38909 attcct 38904
to top
>gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene,
           complete cds; nuclear gene for mitochondrial product
          Length = 764

 Score =  202 bits (102), Expect = 1e-48
 Identities = 213/250 (85%)
 Strand = Plus / Minus

                                                                       
Query: 161 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 220
           |||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| ||
Sbjct: 764 tcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctcc 705

                                                                       
Query: 221 cagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttctt 280
           ||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 704 cagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttctt 645

                                                                       
Query: 281 cagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttgt 340
           || ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 644 caaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttgt 585

                                                                       
Query: 341 atgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaaga 400
            || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | |||||
Sbjct: 584 gtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaaga 525

                     
Query: 401 tgtgtagctc 410
           ||||||||||
Sbjct: 524 tgtgtagctc 515



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 489 cggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatacttgtcc 548
           |||||||||||||||||||| || ||||||||||| ||||  ||||| || ||||| |||
Sbjct: 62  cggagagcaaatggagcatcactgaggggtgcaaaccgggccttgctctggtacttctcc 3

             
Query: 549 at 550
           ||
Sbjct: 2   at 1
to top
>gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence
          Length = 726

 Score =  125 bits (63), Expect = 2e-25
 Identities = 144/171 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203 ggatatgatggcagcacccagcgcaacgccaaatatacggtgtgagatggagaatgtagc 262
           ||||||||||||| | |||||||| || || || |||||||| ||||| ||||| |||||
Sbjct: 426 ggatatgatggcaactcccagcgcgacaccgaagatacggtgcgagatagagaaagtagc 367

                                                                       
Query: 263 gctcagctgtggcttcttcagaggaagatggggagacagtgggcggttcgcaacaggagc 322
           ||| | ||||||||||||||||||||||||||| ||||| ||||||||||| |||| || 
Sbjct: 366 gctgaactgtggcttcttcagaggaagatggggcgacagcgggcggttcgctacagcaga 307

                                                              
Query: 323 cgacaggggacggcttgtatgtagggatcggtttccagatggaggcatctt 373
            |||||||| | ||| ||||| |||  ||| ||||||| || || ||||||
Sbjct: 306 tgacagggggcagctcgtatgcaggagtcgatttccaggtgtagacatctt 256



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 483 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 542
           ||||||||||| ||||| ||||  |||||||  ||||||||  | |||||||||| ||||
Sbjct: 182 gcaccacggagggcaaacggagtctctctcaatggtgcaaattgagtgttgctgttatac 123

                    
Query: 543 ttgtccatt 551
             |||||||
Sbjct: 122 aggtccatt 114
to top
>gb|AY108580.1| Zea mays PCO078974 mRNA sequence
          Length = 816

 Score =  125 bits (63), Expect = 2e-25
 Identities = 144/171 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203 ggatatgatggcagcacccagcgcaacgccaaatatacggtgtgagatggagaatgtagc 262
           ||||||||||||| | |||||||| || || || |||||||| ||||| ||||| |||||
Sbjct: 567 ggatatgatggcaactcccagcgcgacaccgaagatacggtgcgagatagagaaagtagc 508

                                                                       
Query: 263 gctcagctgtggcttcttcagaggaagatggggagacagtgggcggttcgcaacaggagc 322
           ||| | ||||||||||||||||||||||||||| ||||| ||||||||||| |||| || 
Sbjct: 507 gctgaactgtggcttcttcagaggaagatggggcgacagcgggcggttcgctacagcaga 448

                                                              
Query: 323 cgacaggggacggcttgtatgtagggatcggtttccagatggaggcatctt 373
            |||||||| | ||| ||||| |||  ||| ||||||| || || ||||||
Sbjct: 447 tgacagggggcagctcgtatgcaggagtcgatttccaggtgtagacatctt 397



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 483 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 542
           ||||||||||| ||||| ||||  |||||||  ||||||||  | |||||||||| ||||
Sbjct: 323 gcaccacggagggcaaacggagtctctctcaatggtgcaaattgagtgttgctgttatac 264

                    
Query: 543 ttgtccatt 551
           || ||||||
Sbjct: 263 ttctccatt 255
to top
>emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C21 on chromosome 1p22.2-31.1
             Contains STSs and GSSs, complete sequence
          Length = 143163

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 431   ggagtgtctaagggcatccatg 452
             ||||||||||||||||||||||
Sbjct: 59454 ggagtgtctaagggcatccatg 59475
to top
>ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726
           (ENSANGG00000023827), partial mRNA
          Length = 708

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  gcattctgcccaatgacgaaa 115
           |||||||||||||||||||||
Sbjct: 658 gcattctgcccaatgacgaaa 678
to top
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 541    acttgtccattccttcctccg 561
              |||||||||||||||||||||
Sbjct: 147878 acttgtccattccttcctccg 147858
to top
>gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complete sequence
          Length = 178653

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   cagatggaggcatcttctgt 377
             ||||||||||||||||||||
Sbjct: 24349 cagatggaggcatcttctgt 24368
to top
>gb|AY639544.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ttattattcataaaattttg 57
           ||||||||||||||||||||
Sbjct: 292 ttattattcataaaattttg 273
to top
>gb|AY639543.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ttattattcataaaattttg 57
           ||||||||||||||||||||
Sbjct: 292 ttattattcataaaattttg 273
to top
>gb|AY639542.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100501 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  ttattattcataaaattttg 57
           ||||||||||||||||||||
Sbjct: 292 ttattattcataaaattttg 273
to top
>emb|AJ884762.1| Gigaspora rosea dispersed repeat GrosRE3-T3, clone Gros10
          Length = 1550

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 37 cttattattcataaaatttt 56
          ||||||||||||||||||||
Sbjct: 23 cttattattcataaaatttt 42
to top
>emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chromosome 9 Contains the
             5' end of the RFX3 gene for regulatory factor X, 3
             (influences HLA class II expression), the 5' end of a
             novel gene and a CpG island, complete sequence
          Length = 177164

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    tttcccttattattcataaaattt 55
             |||| |||||||||||||||||||
Sbjct: 91554 tttcacttattattcataaaattt 91531
to top
>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains
             pseudogene similar to part of a novel gene (KIAA1688), a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 6 (SLC25A6) (ANT3)
             pseudogene and a CpG island, complete sequence
          Length = 169550

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    atgacaactgcacctacagttgca 97
             ||||||| ||||||||||||||||
Sbjct: 83532 atgacaaatgcacctacagttgca 83555
to top
>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence
          Length = 141449

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    agtttcccttattattcata 49
             ||||||||||||||||||||
Sbjct: 91276 agtttcccttattattcata 91295
to top
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    tagggatcggtttccagatg 363
              ||||||||||||||||||||
Sbjct: 711308 tagggatcggtttccagatg 711327
to top
>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence
          Length = 159520

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   aagatggggagacagtgggc 306
             ||||||||||||||||||||
Sbjct: 63113 aagatggggagacagtgggc 63132
to top
>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence
          Length = 145042

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    agtttcccttattattcata 49
             ||||||||||||||||||||
Sbjct: 11654 agtttcccttattattcata 11635
to top
>gb|AY953190.1| Uncultured anaerobic bacterium clone A-2A 16S ribosomal RNA gene,
            partial sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 552  ccttcctccgcgttgccgcg 571
            ||||||||||||||||||||
Sbjct: 1085 ccttcctccgcgttgccgcg 1066
to top
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 44      ttcataaaattttgcaggattgat 67
               ||||||||||||||||||| ||||
Sbjct: 1103477 ttcataaaattttgcaggagtgat 1103454
to top
>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence
          Length = 140977

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    agtttcccttattattcata 49
             ||||||||||||||||||||
Sbjct: 49694 agtttcccttattattcata 49675
to top
>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134,
             complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 574   gggcgagagcgcagcggaag 593
             ||||||||||||||||||||
Sbjct: 69437 gggcgagagcgcagcggaag 69418
to top
>emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chromosome 2, complete
            sequence
          Length = 149273

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  acagagaagatgtgtagctc 410
            ||||||||||||||||||||
Sbjct: 5955 acagagaagatgtgtagctc 5974
to top
>dbj|AB029488.1| Homo sapiens C11orf21 mRNA, complete cds
          Length = 2967

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   agtttcccttattattcata 49
            ||||||||||||||||||||
Sbjct: 2786 agtttcccttattattcata 2805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,882,579
Number of Sequences: 3902068
Number of extensions: 4882579
Number of successful extensions: 93961
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93790
Number of HSP's gapped (non-prelim): 164
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top