ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67) (G... 77 6e-14
2ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2 32 1.3

>STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67)|
            (Galactinol--raffinose galactosyltransferase)
          Length = 853

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
 Frame = -2

Query: 658  VGVFNCQGAGNWTWLVEEISHVPTT---VNITGHLSPSDVESLEEITGDDWNGETAVYAF 488
            +G FNCQGAG W  ++++    P     +  T H++  + +  EE +      E  VY  
Sbjct: 671  IGAFNCQGAG-WDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSHLGKAEEYVVYLN 729

Query: 487  NSCSLSRLQ-KHQSLELSLVTMACEIYTISPIQVYGGAVGFAPLGLLNMFNSGGALDSIR 311
             +  LS +  K + ++ ++     E+Y+  P+    G + FAP+GL NMFNSGG +  + 
Sbjct: 730  QAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTNMFNSGGTVIDLE 789

Query: 310  CTVDSSATTVQIKCRGPGRFGAYSSARPALCRVDANEVEFSHSDDGLLAFDL 155
               + +    +IK +G G F AYSS  P   +++  EV+F    DG L  ++
Sbjct: 790  YVGNGA----KIKVKGGGSFLAYSSESPKKFQLNGCEVDFEWLGDGKLCVNV 837



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>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2|
          Length = 1427

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 406  ISPIQVYGGAVGFAPLGLLNMFNSGGALDSIRCTVDSSA--TTVQIKCRGPGR 254
            ++P+ + G A+   PLG L  FNSG A  S    + +S   TT  ++  GPGR
Sbjct: 1078 LAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGR 1130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,289,421
Number of Sequences: 219361
Number of extensions: 2211082
Number of successful extensions: 5428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5425
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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