ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11k17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472912.1| Oryza sativa (japonica cultivar-group), predic... 208 2e-50
2dbj|AK099817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 2e-50
3dbj|AK100197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 4e-48
4emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 109 1e-20
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 103 7e-19
7gb|AY111353.1| Zea mays CL37737_-1 mRNA sequence 92 3e-15
8gb|BT024038.1| Zea mays clone EL01N0428D04 mRNA sequence 46 0.15
9emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on ch... 44 0.59
10gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's ... 42 2.3
11gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, com... 42 2.3
12gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, comple... 42 2.3
13gb|AF497512.1| Zea mays alkaline alpha galactosidase 3 mRNA, com... 42 2.3
14ref|NM_120071.1| Arabidopsis thaliana kinase AT4G39110 mRNA, com... 40 9.2
15gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p1... 40 9.2
16gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children'... 40 9.2
17ref|XM_385392.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 9.2
18gb|AC127594.3| Mus musculus BAC clone RP23-44G8 from chromosome ... 40 9.2
19gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome... 40 9.2
20ref|XM_737465.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.2
21gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 40 9.2
22emb|AL359073.25| Human DNA sequence from clone RP11-432F4 on chr... 40 9.2
23gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, com... 40 9.2
24gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome... 40 9.2
25emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, ... 40 9.2
26emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BA... 40 9.2
27emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, B... 40 9.2
28dbj|AB226586.1| Aspergillus oryzae cDNA, contig sequence: AoEST3448 40 9.2
29gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, co... 40 9.2
30dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 9.2
31gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 9.2
32gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, com... 40 9.2
33emb|AL133368.6|CNS01DUT Human chromosome 14 DNA sequence BAC R-4... 40 9.2 
>ref|XM_472912.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2217

 Score =  208 bits (105), Expect = 2e-50
 Identities = 405/505 (80%)
 Strand = Plus / Minus

                                                                        
Query: 153  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 212
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 2159 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2100

                                                                        
Query: 213  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 272
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 2099 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2040

                                                                        
Query: 273  ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 332
            | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 2039 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 1980

                                                                        
Query: 333  ccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaacc 392
            || |||||| ||||||| | ||||||||| || ||||||  ||||   |||||  |||||
Sbjct: 1979 cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaacc 1920

                                                                        
Query: 393  tgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaactt 452
            | |||| | | ||||||||| |||| ||||| ||| ||   ||| |||| ||||| | | 
Sbjct: 1919 tttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccatagtc 1860

                                                                        
Query: 453  tggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctctcca 512
            || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| 
Sbjct: 1859 tgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctctccg 1800

                                                                        
Query: 513  ttccaatcatcgccagtaatctcctcaagagactctacatctgatggcgagagatggcca 572
            ||||||||||| ||||  |||||||||||  |||| ||||||||||| |||||||  |||
Sbjct: 1799 ttccaatcatccccagctatctcctcaagtaactccacatctgatggggagagatcacca 1740

                                                                        
Query: 573  gttatgttaacggttgtgggaacatgtgaaatttcttcgactaaccaagtccagtttcca 632
            || |||   ||||| ||||||||||| | | ||||||  |||    ||||||| ||||||
Sbjct: 1739 gtgatgcagacggtagtgggaacatgagcattttctttcactggataagtccaatttcca 1680

                                     
Query: 633  gctccctgacaattgaatactccga 657
            || |||||||| || || |||||||
Sbjct: 1679 gcaccctgacagttaaacactccga 1655
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>dbj|AK099817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E13, full
            insert sequence
          Length = 2449

 Score =  208 bits (105), Expect = 2e-50
 Identities = 405/505 (80%)
 Strand = Plus / Minus

                                                                        
Query: 153  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 212
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 2183 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2124

                                                                        
Query: 213  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 272
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 2123 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2064

                                                                        
Query: 273  ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 332
            | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 2063 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 2004

                                                                        
Query: 333  ccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaacc 392
            || |||||| ||||||| | ||||||||| || ||||||  ||||   |||||  |||||
Sbjct: 2003 cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaacc 1944

                                                                        
Query: 393  tgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaactt 452
            | |||| | | ||||||||| |||| ||||| ||| ||   ||| |||| ||||| | | 
Sbjct: 1943 tttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccatagtc 1884

                                                                        
Query: 453  tggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctctcca 512
            || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| 
Sbjct: 1883 tgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctctccg 1824

                                                                        
Query: 513  ttccaatcatcgccagtaatctcctcaagagactctacatctgatggcgagagatggcca 572
            ||||||||||| ||||  |||||||||||  |||| ||||||||||| |||||||  |||
Sbjct: 1823 ttccaatcatccccagctatctcctcaagtaactccacatctgatggggagagatcacca 1764

                                                                        
Query: 573  gttatgttaacggttgtgggaacatgtgaaatttcttcgactaaccaagtccagtttcca 632
            || |||   ||||| ||||||||||| | | ||||||  |||    ||||||| ||||||
Sbjct: 1763 gtgatgcagacggtagtgggaacatgagcattttctttcactggataagtccaatttcca 1704

                                     
Query: 633  gctccctgacaattgaatactccga 657
            || |||||||| || || |||||||
Sbjct: 1703 gcaccctgacagttaaacactccga 1679
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>dbj|AK100197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037L18, full
            insert sequence
          Length = 2606

 Score =  200 bits (101), Expect = 4e-48
 Identities = 404/505 (80%)
 Strand = Plus / Minus

                                                                        
Query: 153  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 212
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 2227 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2168

                                                                        
Query: 213  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 272
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 2167 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2108

                                                                        
Query: 273  ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 332
            | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 2107 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 2048

                                                                        
Query: 333  ccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaacc 392
            || |||||| ||||||| | ||||||||| || ||||||  ||||   |||||  |||||
Sbjct: 2047 cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaacc 1988

                                                                        
Query: 393  tgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaactt 452
            | |||| | | ||||||||| |||| ||||| ||| ||   ||| |||| ||||| | | 
Sbjct: 1987 tttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccatagtc 1928

                                                                        
Query: 453  tggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctctcca 512
            || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| 
Sbjct: 1927 tgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctctccg 1868

                                                                        
Query: 513  ttccaatcatcgccagtaatctcctcaagagactctacatctgatggcgagagatggcca 572
            ||||||| ||| ||||  |||||||||||  |||| ||||||||||| |||||||  |||
Sbjct: 1867 ttccaattatccccagctatctcctcaagtaactccacatctgatggggagagatcacca 1808

                                                                        
Query: 573  gttatgttaacggttgtgggaacatgtgaaatttcttcgactaaccaagtccagtttcca 632
            || |||   ||||| ||||||||||| | | ||||||  |||    ||||||| ||||||
Sbjct: 1807 gtgatgcagacggtagtgggaacatgagcattttctttcactggataagtccaatttcca 1748

                                     
Query: 633  gctccctgacaattgaatactccga 657
            || |||||||| || || |||||||
Sbjct: 1747 gcaccctgacagttaaacactccga 1723
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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score =  109 bits (55), Expect = 1e-20
 Identities = 148/179 (82%)
 Strand = Plus / Plus

                                                                         
Query: 479   acatgaattgaaagcatatactgcagtctctccattccaatcatcgccagtaatctcctc 538
             ||||||||| |||||| |||||||||||||||| ||||||||||| ||||  ||||||||
Sbjct: 41131 acatgaattaaaagcaaatactgcagtctctccgttccaatcatccccagctatctcctc 41190

                                                                         
Query: 539   aagagactctacatctgatggcgagagatggccagttatgttaacggttgtgggaacatg 598
             |||  |||| ||||||||||| |||||||  ||||| |||   ||||| |||||||||||
Sbjct: 41191 aagtaactccacatctgatggggagagatcaccagtgatgcagacggtagtgggaacatg 41250

                                                                        
Query: 599   tgaaatttcttcgactaaccaagtccagtttccagctccctgacaattgaatactccga 657
              | | ||||||  |||    ||||||| |||||||| |||||||| || || |||||||
Sbjct: 41251 agcattttctttcactggataagtccaatttccagcaccctgacagttaaacactccga 41309



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 176/219 (80%)
 Strand = Plus / Plus

                                                                         
Query: 153   gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 212
             ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 40519 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 40578

                                                                         
Query: 213   actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 272
             || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 40579 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 40638

                                                                         
Query: 273   ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 332
             | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 40639 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 40698

                                                    
Query: 333   ccggagttgaacatgtttagcagtccaagtggcgcaaac 371
             || |||||| ||||||| | ||||||||| || ||||||
Sbjct: 40699 cctgagttgtacatgttaaccagtccaagaggagcaaac 40737
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  109 bits (55), Expect = 1e-20
 Identities = 148/179 (82%)
 Strand = Plus / Plus

                                                                            
Query: 479      acatgaattgaaagcatatactgcagtctctccattccaatcatcgccagtaatctcctc 538
                ||||||||| |||||| |||||||||||||||| ||||||||||| ||||  ||||||||
Sbjct: 24044152 acatgaattaaaagcaaatactgcagtctctccgttccaatcatccccagctatctcctc 24044211

                                                                            
Query: 539      aagagactctacatctgatggcgagagatggccagttatgttaacggttgtgggaacatg 598
                |||  |||| ||||||||||| |||||||  ||||| |||   ||||| |||||||||||
Sbjct: 24044212 aagtaactccacatctgatggggagagatcaccagtgatgcagacggtagtgggaacatg 24044271

                                                                           
Query: 599      tgaaatttcttcgactaaccaagtccagtttccagctccctgacaattgaatactccga 657
                 | | ||||||  |||    ||||||| |||||||| |||||||| || || |||||||
Sbjct: 24044272 agcattttctttcactggataagtccaatttccagcaccctgacagttaaacactccga 24044330



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 176/219 (80%)
 Strand = Plus / Plus

                                                                            
Query: 153      gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 212
                ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 24043540 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 24043599

                                                                            
Query: 213      actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 272
                || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 24043600 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 24043659

                                                                            
Query: 273      ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 332
                | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 24043660 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 24043719

                                                       
Query: 333      ccggagttgaacatgtttagcagtccaagtggcgcaaac 371
                || |||||| ||||||| | ||||||||| || ||||||
Sbjct: 24043720 cctgagttgtacatgttaaccagtccaagaggagcaaac 24043758
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>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
             sequence
          Length = 90767

 Score =  103 bits (52), Expect = 7e-19
 Identities = 103/120 (85%)
 Strand = Plus / Plus

                                                                         
Query: 479   acatgaattgaaagcatatactgcagtctctccattccaatcatcgccagtaatctcctc 538
             ||||||||| |||||| |||||||||||||||| ||||||||||| ||||  ||||||||
Sbjct: 10393 acatgaattaaaagcaaatactgcagtctctccgttccaatcatccccagctatctcctc 10452

                                                                         
Query: 539   aagagactctacatctgatggcgagagatggccagttatgttaacggttgtgggaacatg 598
             |||  |||| ||||||||||| |||||||  ||||| |||   ||||| |||||||||||
Sbjct: 10453 aagtaactccacatctgatggggagagatcaccagtgatgcagacggtagtgggaacatg 10512



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 176/219 (80%)
 Strand = Plus / Plus

                                                                         
Query: 153   gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 212
             ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 9782  gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 9841

                                                                         
Query: 213   actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 272
             || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 9842  acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 9901

                                                                         
Query: 273   ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 332
             | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 9902  tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 9961

                                                    
Query: 333   ccggagttgaacatgtttagcagtccaagtggcgcaaac 371
             || |||||| ||||||| | ||||||||| || ||||||
Sbjct: 9962  cctgagttgtacatgttaaccagtccaagaggagcaaac 10000
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>gb|AY111353.1| Zea mays CL37737_-1 mRNA sequence
          Length = 619

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                       
Query: 448 aactttggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtct 507
           |||||||| | ||||| |||||||| ||||||||||||  ||||||||||||||||||||
Sbjct: 489 aactttggngtttctgaagccttgaaagagaacatgaaccgaaagcatatactgcagtct 548

                                
Query: 508 ctccattccaatcatcgccag 528
           | |||||||| ||||| ||||
Sbjct: 549 ccccattccagtcatcaccag 569



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                       
Query: 239 tgaatacgccccaaaacgtcctggccctcggcatttgatctgaactgtcgtagctgaaga 298
           ||||||||||||||| || ||||| ||||||||| | || ||||||||||||||||||||
Sbjct: 280 tgaatacgccccaaaccgccctggtcctcggcatcttatatgaactgtcgtagctgaaga 339

                                                                       
Query: 299 atcaactgtgcatctgatactgtcgagtgcgccaccggagttgaacatgtttagcagtcc 358
           |||  |   || |   ||| |||| ||||| |||||||||||||||||||  | ||||||
Sbjct: 340 atctgcaacgcttgaaatattgtcaagtgcaccaccggagttgaacatgtcgatcagtcc 399

                        
Query: 359 aagtggcgcaaac 371
           ||| |||||||||
Sbjct: 400 aagaggcgcaaac 412
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>gb|BT024038.1| Zea mays clone EL01N0428D04 mRNA sequence
          Length = 1868

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 629  tccagctccctgacaattgaatactcc 655
            ||||||||||||||||||||| |||||
Sbjct: 1793 tccagctccctgacaattgaacactcc 1767
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>emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on chromosome 13, complete
             sequence
          Length = 117646

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 114   atctctatgttcctgagtctgg 135
             ||||||||||||||||||||||
Sbjct: 29652 atctctatgttcctgagtctgg 29673
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>gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224930

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 614   taaccaagtccagtttccagc 634
             |||||||||||||||||||||
Sbjct: 76433 taaccaagtccagtttccagc 76413
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>gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, complete sequence
          Length = 166218

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   ctggtgtgggaagatccatct 152
             |||||||||||||||||||||
Sbjct: 70958 ctggtgtgggaagatccatct 70938
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>gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, complete sequence
          Length = 192886

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   ccatcatcagaatgactgaac 194
             |||||||||||||||||||||
Sbjct: 57243 ccatcatcagaatgactgaac 57223
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>gb|AF497512.1| Zea mays alkaline alpha galactosidase 3 mRNA, complete cds
          Length = 2483

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  gcgccaccggagttgaacatg 347
            |||||||||||||||||||||
Sbjct: 2127 gcgccaccggagttgaacatg 2107
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>ref|NM_120071.1| Arabidopsis thaliana kinase AT4G39110 mRNA, complete cds
          Length = 2637

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  gaccaatgaaagctccaaac 450
            ||||||||||||||||||||
Sbjct: 1369 gaccaatgaaagctccaaac 1350
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>gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p11.4, complete sequence
          Length = 128427

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   agagatcaaatgccagcaag 173
             ||||||||||||||||||||
Sbjct: 65713 agagatcaaatgccagcaag 65732
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>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 217066

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  tggtgtgggaagatccatct 152
            ||||||||||||||||||||
Sbjct: 1716 tggtgtgggaagatccatct 1697
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>ref|XM_385392.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05216.1)
            partial mRNA
          Length = 5268

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 452  ttggtgcttctggagccttgatag 475
            |||||||||||| |||||||||||
Sbjct: 4858 ttggtgcttctgcagccttgatag 4835
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>gb|AC127594.3| Mus musculus BAC clone RP23-44G8 from chromosome 7, complete sequence
          Length = 209828

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 615   aaccaagtccagtttccagc 634
             ||||||||||||||||||||
Sbjct: 56940 aaccaagtccagtttccagc 56921
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>gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome 18, complete sequence
          Length = 193005

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   tggtgtgggaagatccatct 152
             ||||||||||||||||||||
Sbjct: 79578 tggtgtgggaagatccatct 79597
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>ref|XM_737465.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000685.01.0)
            partial mRNA
          Length = 2622

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  agagaatctctatgttcctg 128
            ||||||||||||||||||||
Sbjct: 2590 agagaatctctatgttcctg 2571
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>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     atataaacatcagtaattgg 23
             ||||||||||||||||||||
Sbjct: 22045 atataaacatcagtaattgg 22064
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>emb|AL359073.25| Human DNA sequence from clone RP11-432F4 on chromosome 9 Contains the
            5' end of the gene for regulator of differentiation 1
            (ROD1), a ribosomal protein L32 (RPL32) pseudogene and a
            CpG island.n, complete sequence
          Length = 64850

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  tctctatgttcctgagtctggtgt 138
            |||||||||| |||||||||||||
Sbjct: 9277 tctctatgttgctgagtctggtgt 9254
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>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence
          Length = 194631

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    tggtgtgggaagatccatct 152
              ||||||||||||||||||||
Sbjct: 129108 tggtgtgggaagatccatct 129089
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>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence
          Length = 208109

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tggtgtgggaagatccatct 152
             ||||||||||||||||||||
Sbjct: 53655 tggtgtgggaagatccatct 53636
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>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
          Length = 198987

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    gaccaatgaaagctccaaac 450
              ||||||||||||||||||||
Sbjct: 137907 gaccaatgaaagctccaaac 137926
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>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project)
          Length = 89035

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 431  gaccaatgaaagctccaaac 450
            ||||||||||||||||||||
Sbjct: 6443 gaccaatgaaagctccaaac 6462
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>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project)
          Length = 100469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   gaccaatgaaagctccaaac 450
             ||||||||||||||||||||
Sbjct: 99896 gaccaatgaaagctccaaac 99915
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>dbj|AB226586.1| Aspergillus oryzae cDNA, contig sequence: AoEST3448
          Length = 568

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 504 gtctctccattccaatcatc 523
           ||||||||||||||||||||
Sbjct: 129 gtctctccattccaatcatc 110
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>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence
          Length = 160748

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   aattgaaagcatatactgca 503
             ||||||||||||||||||||
Sbjct: 79351 aattgaaagcatatactgca 79370
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 504    gtctctccattccaatcatc 523
              ||||||||||||||||||||
Sbjct: 307283 gtctctccattccaatcatc 307264
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 638     ctgacaattgaatactccga 657
               ||||||||||||||||||||
Sbjct: 2269002 ctgacaattgaatactccga 2268983
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>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence
          Length = 199088

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 133  tggtgtgggaagatccatct 152
            ||||||||||||||||||||
Sbjct: 5977 tggtgtgggaagatccatct 5996
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>emb|AL133368.6|CNS01DUT Human chromosome 14 DNA sequence BAC R-436M15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163272

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    catcagaatgactgaactct 197
              ||||||||||||||||||||
Sbjct: 111617 catcagaatgactgaactct 111636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,300,183
Number of Sequences: 3902068
Number of extensions: 5300183
Number of successful extensions: 164053
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163886
Number of HSP's gapped (non-prelim): 161
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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