ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11k10 |
|---|---|
| Clone Library Name | barley_pub |
>STT3_MOUSE (P46978) Oligosaccharyl transferase STT3 subunit homolog (B5)| (Integral membrane protein 1) Length = 705 Score = 189 bits (480), Expect = 7e-48 Identities = 100/172 (58%), Positives = 117/172 (68%), Gaps = 8/172 (4%) Frame = -2 Query: 711 GYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFDSLDXXXXXXXXXXXXXY 532 GYQ TAMANRT++VDNNTWNNTHI+ VG AM+S E+ A+EI LD Y Sbjct: 529 GYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAYEIMRELDVSYVLVIFGGLTGY 588 Query: 531 PSDDINKFLWMVRIGGGEFP--HIKEPDYLR-DGQYRVDAQATPTMLNCLMYKLCYYRF- 364 SDDINKFLWMVRIGG HIKE DY G++RVD + +P +LNCLMYK+CYYRF Sbjct: 589 SSDDINKFLWMVRIGGSTETGRHIKENDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFG 648 Query: 363 -VETDGK---GFDRVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNR 220 V T+ K GFDRVR EIG K F+L EE +TT HW+VRIYK+K NR Sbjct: 649 QVYTEAKRPPGFDRVRNAEIGNKDFELDVLEEAYTTEHWLVRIYKVKDLDNR 700
>STT3_HUMAN (P46977) Oligosaccharyl transferase STT3 subunit homolog (B5)| (Integral membrane protein 1) (TMC) Length = 705 Score = 188 bits (477), Expect = 2e-47 Identities = 100/172 (58%), Positives = 117/172 (68%), Gaps = 8/172 (4%) Frame = -2 Query: 711 GYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFDSLDXXXXXXXXXXXXXY 532 GYQ TAMANRT++VDNNTWNNTHI+ VG AM+S E+ A+EI LD Y Sbjct: 529 GYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAYEIMRELDVSYVLVIFGGLTGY 588 Query: 531 PSDDINKFLWMVRIGGG--EFPHIKEPDYLR-DGQYRVDAQATPTMLNCLMYKLCYYRF- 364 SDDINKFLWMVRIGG HIKE DY G++RVD + +P +LNCLMYK+CYYRF Sbjct: 589 SSDDINKFLWMVRIGGSTDTGKHIKENDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFG 648 Query: 363 -VETDGK---GFDRVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNR 220 V T+ K GFDRVR EIG K F+L EE +TT HW+VRIYK+K NR Sbjct: 649 QVYTEAKRPPGFDRVRNAEIGNKDFELDVLEEGYTTEHWLVRIYKVKDLDNR 700
>STT3_CAEEL (P46975) Oligosaccharyl transferase STT3 subunit homolog| Length = 757 Score = 175 bits (443), Expect = 1e-43 Identities = 95/171 (55%), Positives = 107/171 (62%), Gaps = 7/171 (4%) Frame = -2 Query: 711 GYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFDSLDXXXXXXXXXXXXXY 532 GYQ MANRT +VDNNTWNN+HIA VG AMSS E AA+EI LD Y Sbjct: 551 GYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNESAAYEIMTELDVDYILVIFGGVIGY 610 Query: 531 PSDDINKFLWMVRIGGGEFP-HIKEPDYLRD-GQYRVDAQATPTMLNCLMYKLCYYRFVE 358 DDINKFLWMVRI GE P I+E +Y G+Y A A+ TMLNCLMYK+ YYRF E Sbjct: 611 SGDDINKFLWMVRIAQGEHPKDIREENYFTSTGEYSTGAGASETMLNCLMYKMSYYRFGE 670 Query: 357 T-----DGKGFDRVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLKPQKNR 220 T GFDR RGY IGKK L + EE +TT +W+VRIYK K NR Sbjct: 671 TRVGYNQAGGFDRTRGYVIGKKDITLEYIEEAYTTENWLVRIYKRKKLPNR 721
>STT3_YEAST (P39007) Oligosaccharyl transferase STT3 subunit| Length = 718 Score = 145 bits (366), Expect = 1e-34 Identities = 82/164 (50%), Positives = 104/164 (63%), Gaps = 5/164 (3%) Frame = -2 Query: 711 GYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFDSLDXXXXXXXXXXXXXY 532 GYQ MA+RT +VDNNTWNNTHIA VG AM+SPE+ ++EI D + Sbjct: 520 GYQIGGMADRTTLVDNNTWNNTHIAIVGKAMASPEEKSYEILKEHDVDYVLVIFGGLIGF 579 Query: 531 PSDDINKFLWMVRIGGGEFP-HIKEPD-YLRDGQYRVDAQATPTMLNCLMYKLCYYRFVE 358 DDINKFLWM+RI G +P IKE D Y +G+YRVDA+A+ TM N L+YK+ Y F + Sbjct: 580 GGDDINKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQ 639 Query: 357 --TDGKGFDRVRGYEIGKKHF-KLTHFEEVFTTHHWMVRIYKLK 235 G+ DRVR I L +F+EVFT+ +WMVRIY+LK Sbjct: 640 LFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWMVRIYQLK 683
>STT3_SCHPO (O94335) Oligosaccharyl transferase stt3 subunit| Length = 752 Score = 137 bits (344), Expect = 4e-32 Identities = 74/163 (45%), Positives = 98/163 (60%), Gaps = 4/163 (2%) Frame = -2 Query: 711 GYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFDSLDXXXXXXXXXXXXXY 532 GYQ MA+R +VDNNTWNNTHIATVG AMSSPE+ A+ I D Y Sbjct: 554 GYQIAGMADRITLVDNNTWNNTHIATVGKAMSSPEEKAYPILRKHDVDYILIIYGGTLGY 613 Query: 531 PSDDINKFLWMVRIGGGEFPH--IKEPDYLRDGQYRVDAQATPTMLNCLMYKLCYYRF-- 364 SDD+NKFLWM+RI G +P ++ + +G+YR D ATPTM L+YK+ Y+ Sbjct: 614 SSDDMNKFLWMIRISQGLWPDEIVERNFFTPNGEYRTDDAATPTMRESLLYKMSYHGAWK 673 Query: 363 VETDGKGFDRVRGYEIGKKHFKLTHFEEVFTTHHWMVRIYKLK 235 + +G+DR R ++ K +L EE FTT H +VR+YK+K Sbjct: 674 LFPPNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVK 716
>SRD31_CAEEL (P91211) Serpentine receptor class delta-31 (Protein srd-31)| Length = 315 Score = 34.3 bits (77), Expect = 0.39 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +1 Query: 277 NLLKMC*LEMLLSYFISSYSIKTFAISLNKPVVAKLVHEAIQHSWSCLSINTVLAISKII 456 ++L +C LE L + ISSY + + + + +P + KLV A CLSI ++ I ++ Sbjct: 88 HMLMLCFLEYNLIWMISSYIFRYYILYVRQPSIKKLVFVAF-----CLSIPSI--IHMVV 140 Query: 457 W 459 W Sbjct: 141 W 141
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 30.0 bits (66), Expect = 7.3 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -3 Query: 158 GGRRTHGNEEKQCSILHERLDIVAQLHQAQ 69 G +THG+E +CS E DIV Q QAQ Sbjct: 328 GDWKTHGSEYYECSRYKENPDIVNQSQQAQ 357
>RPOC_BACTN (Q8A470) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1427 Score = 30.0 bits (66), Expect = 7.3 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -2 Query: 468 IKEPDYLRDGQYRVDAQATPTMLNCLMYKLCYYRFVETDGKGFDRVRGYEIGKKHFKL 295 ++E DY+R G D TP + + ++ + + R++G +I KHF++ Sbjct: 1190 VQENDYVRAGTPLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEI 1247
>RPOC_BACFR (Q64NJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1427 Score = 30.0 bits (66), Expect = 7.3 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -2 Query: 468 IKEPDYLRDGQYRVDAQATPTMLNCLMYKLCYYRFVETDGKGFDRVRGYEIGKKHFKL 295 ++E DY+R G D TP + + ++ + + R++G +I KHF++ Sbjct: 1190 VQENDYVRAGTPLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEI 1247
>RPOC_BACFN (Q5L898) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1427 Score = 30.0 bits (66), Expect = 7.3 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = -2 Query: 468 IKEPDYLRDGQYRVDAQATPTMLNCLMYKLCYYRFVETDGKGFDRVRGYEIGKKHFKL 295 ++E DY+R G D TP + + ++ + + R++G +I KHF++ Sbjct: 1190 VQENDYVRAGTPLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEI 1247
>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| (UbcM4-interacting protein 48) Length = 492 Score = 30.0 bits (66), Expect = 7.3 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -3 Query: 158 GGRRTHGNEEKQCSILHERLDIVAQLHQAQ 69 G +THG+E +CS E DIV Q QAQ Sbjct: 327 GDWKTHGSEYYECSRYKENPDIVNQSQQAQ 356
>Y372_MYCPN (P75409) Hypothetical protein MPN372 (A19_orf591)| Length = 591 Score = 29.6 bits (65), Expect = 9.5 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 457 WLLDVRKFTTSYANHPKELVNIITRVANQPSKHNKH 564 WL+D +A+HP V TR+ N+P HN H Sbjct: 148 WLVDAVPVEPGHAHHPAGRVVETTRI-NEPEMHNPH 182
>ODPA_YEAST (P16387) Pyruvate dehydrogenase E1 component alpha subunit,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) Length = 420 Score = 29.6 bits (65), Expect = 9.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 80 AVELQYQVSHVKWNIVSLHCHGFFFRPAASVELVLA 187 AV ++ ++ + I S CHGF F ASV+ VLA Sbjct: 121 AVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLA 156
>KCD14_HUMAN (Q9BQ13) Potassium channel tetramerisation domain-containing| protein 14 Length = 225 Score = 29.6 bits (65), Expect = 9.5 Identities = 21/83 (25%), Positives = 30/83 (36%) Frame = -2 Query: 681 TVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFDSLDXXXXXXXXXXXXXYPSDDINKFLW 502 + +V+ N H T+GT P E+F SL PS L Sbjct: 2 STVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPILD 61 Query: 501 MVRIGGGEFPHIKEPDYLRDGQY 433 +R G HI P+ R+ Q+ Sbjct: 62 YLRTGQVPTQHI--PEVYREAQF 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,631,913 Number of Sequences: 219361 Number of extensions: 1954242 Number of successful extensions: 4351 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4339 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
