ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11k08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 35 0.24
2ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kin... 34 0.71
3VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous... 33 0.92
4LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 1.6
5MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 32 2.1
6VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B) 31 4.6
7ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 7.8

>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 635 DQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 474
           D+    C  +CQ   + P RK+QCV EC  +    P +   E K   WR+   +E
Sbjct: 119 DKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170



 Score = 30.8 bits (68), Expect = 6.0
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -3

Query: 617 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 459
           C   CQ  +   R   ++ C ++  +++   P +    C+++C  W++  P RK++CV+ 
Sbjct: 87  CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145

Query: 458 C 456
           C
Sbjct: 146 C 146



to top

>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C|
           suppressor SKC1)
          Length = 1155

 Score = 33.9 bits (76), Expect = 0.71
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
 Frame = -3

Query: 719 HALRXQPRTWAAVTMSSS---------APTPKXVXVDDQSNDSCDHKCQHHKVPARKKQC 567
           H L+  P    +  ++SS         +PT K + ++D +     + C     P++K+  
Sbjct: 85  HQLKASPVLHISTNLNSSPQSFTGDQISPTNKKISINDSTRQDKGNSCTTTSSPSQKRSN 144

Query: 566 VDECHRREHHHPSRAACERKC-SHWRDPTR 480
           V   H R+H  PS  +  +   SH  DP +
Sbjct: 145 VLLPHVRKHSSPSLLSFSKNSGSHMGDPNQ 174



to top

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 33.5 bits (75), Expect = 0.92
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
 Frame = -3

Query: 674 SSSAPTPKXVXVDDQSNDS--------CDHKC--QHHKVPARKKQCVDECHRREHHHP 531
           S+ +PTP  V  D+  N S         DH    +HH  P+  +Q     H ++HHHP
Sbjct: 252 SALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSHPQQ--QHPHHQQHHHP 307



to top

>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 96  SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 272
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



to top

>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 617  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 450
            C+ + +  K  A KK+C +E  +RE     +  C       ++ T K++C +   +
Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166



 Score = 31.2 bits (69), Expect = 4.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 617  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 450
            C+ + +  K  A KKQC +E  ++      +  CE +    ++   K+RC +   R
Sbjct: 1080 CEERAKKEKEAAEKKQC-EERAKKLKEAAEKKQCEERAKKEKEAAEKKRCEEAAKR 1134



 Score = 30.8 bits (68), Expect = 6.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 617  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 450
            C+ + +  K  A KKQC +E  ++E     +  CE      ++   K++C +   +
Sbjct: 1096 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKRCEEAAKREKEAAEKKKCAEAAKK 1150



to top

>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)|
          Length = 588

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 617 CDHKC-QHHKVPARKKQCVDECHRREHHHPSRAACERK 507
           C   C Q  + P RK+QCV EC  R   +P R   E +
Sbjct: 127 CQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164



to top

>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 139 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 294
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,538,370
Number of Sequences: 219361
Number of extensions: 1705061
Number of successful extensions: 4854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4846
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 10064252625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top