Clone Name | rbasd11j18 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1318 Score = 206 bits (104), Expect = 7e-50 Identities = 221/260 (85%) Strand = Plus / Minus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctggaaactg 461 |||||| ||||||||||| ||||| ||||||| ||||| || || |||||||| | ||| Sbjct: 823 caatattagaggcaaagcagcaaaccatgtgaaaatgaaaccgaaaggctctggcagctg 764 Query: 462 gaatacattgacctcaaagccagtcagctcatcaatgaagaagaacagtcctagagcaac 521 ||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 763 gaatatgttgatctcaaagccagtcaactcatcgatgaagaagaacagtcctagagcaag 704 Query: 522 aatagtcgctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgta 581 | |||| ||||||||||| |||||||||||||| | |||||||||||| | || ||||| Sbjct: 703 agtagttgctggaacatttagcaggaacatctttaggtagtcaacggtcaaatcactgta 644 Query: 582 aaccttccgactccgtagactgcacctggggccttccgtcactatgtcgcttccatcttg 641 ||||| || || ||||||||||||||||| ||||| || || ||||| ||||| |||| Sbjct: 643 cacctttcggctgcgtagactgcacctgggaccttcggtgacaatgtcacttccgtcttt 584 Query: 642 cttgagtctgagcttgagtt 661 ||| | |||||| ||||||| Sbjct: 583 cttcaatctgagtttgagtt 564 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 ||||| || |||||| |||||||||| ||||||| || ||||||||||| || ||||| Sbjct: 933 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggacatggccccttg 874 Query: 352 aggattaaga 361 |||||||||| Sbjct: 873 aggattaaga 864
>dbj|AK098951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N16, full insert sequence Length = 1342 Score = 206 bits (104), Expect = 7e-50 Identities = 221/260 (85%) Strand = Plus / Minus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctggaaactg 461 |||||| ||||||||||| ||||| ||||||| ||||| || || |||||||| | ||| Sbjct: 847 caatattagaggcaaagcagcaaaccatgtgaaaatgaaaccgaaaggctctggcagctg 788 Query: 462 gaatacattgacctcaaagccagtcagctcatcaatgaagaagaacagtcctagagcaac 521 ||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 787 gaatatgttgatctcaaagccagtcaactcatcgatgaagaagaacagtcctagagcaag 728 Query: 522 aatagtcgctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgta 581 | |||| ||||||||||| |||||||||||||| | |||||||||||| | || ||||| Sbjct: 727 agtagttgctggaacatttagcaggaacatctttaggtagtcaacggtcaaatcactgta 668 Query: 582 aaccttccgactccgtagactgcacctggggccttccgtcactatgtcgcttccatcttg 641 ||||| || || ||||||||||||||||| ||||| || || ||||| ||||| |||| Sbjct: 667 cacctttcggctgcgtagactgcacctgggaccttcggtgacaatgtcacttccgtcttt 608 Query: 642 cttgagtctgagcttgagtt 661 ||| | |||||| ||||||| Sbjct: 607 cttcaatctgagtttgagtt 588 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 ||||| || |||||| |||||||||| ||||||| || ||||||||||| || ||||| Sbjct: 957 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggacatggccccttg 898 Query: 352 aggattaaga 361 |||||||||| Sbjct: 897 aggattaaga 888
>dbj|AK062137.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F08, full insert sequence Length = 1358 Score = 206 bits (104), Expect = 7e-50 Identities = 221/260 (85%) Strand = Plus / Minus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctggaaactg 461 |||||| ||||||||||| ||||| ||||||| ||||| || || |||||||| | ||| Sbjct: 844 caatattagaggcaaagcagcaaaccatgtgaagatgaaaccgaaaggctctggcagctg 785 Query: 462 gaatacattgacctcaaagccagtcagctcatcaatgaagaagaacagtcctagagcaac 521 ||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 784 gaatatgttgatctcaaagccagtcaactcatcgatgaagaagaacagtcctagagcaag 725 Query: 522 aatagtcgctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgta 581 | |||| ||||||||||| |||||||||||||| | |||||||||||| | || ||||| Sbjct: 724 agtagttgctggaacatttagcaggaacatctttaggtagtcaacggtcaaatcactgta 665 Query: 582 aaccttccgactccgtagactgcacctggggccttccgtcactatgtcgcttccatcttg 641 ||||| || || ||||||||||||||||| ||||| || || ||||| ||||| |||| Sbjct: 664 cacctttcggctgcgtagactgcacctgggaccttcggtgacaatgtcacttccgtcttt 605 Query: 642 cttgagtctgagcttgagtt 661 ||| | |||||| ||||||| Sbjct: 604 cttcaatctgagtttgagtt 585 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 ||||| || |||||| |||||||||| ||||||| || ||||||||||| || ||||| Sbjct: 954 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggacatggccccttg 895 Query: 352 aggattaaga 361 |||||||||| Sbjct: 894 aggattaaga 885
>gb|AY104225.1| Zea mays PCO144800 mRNA sequence Length = 939 Score = 115 bits (58), Expect = 2e-22 Identities = 172/210 (81%) Strand = Plus / Minus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctggaaactg 461 |||||| || |||||||| ||||| ||||||| ||||| || || |||||||| | ||| Sbjct: 361 caatattaggggcaaagcagcaaaccatgtgaaaatgaatccgaaaggctctggcagctg 302 Query: 462 gaatacattgacctcaaagccagtcagctcatcaatgaagaagaacagtcctagagcaac 521 ||| ||||||| |||||| ||||||| ||||||||||| ||||||||||| ||||| || Sbjct: 301 gaacacattgatctcaaaaccagtcaattcatcaatgaaaaagaacagtcccagagctac 242 Query: 522 aatagtcgctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgta 581 | || ||||||||||| || ||||||||||| | ||||||||| | | ||| ||||| Sbjct: 241 ggtggtggctggaacatttaggaggaacatctttaggtagtcaacattcaagtcactgta 182 Query: 582 aaccttccgactccgtagactgcacctggg 611 ||||| || ||| ||| ||||||||||| Sbjct: 181 caccttatgagtccttaggctgcacctggg 152 Score = 83.8 bits (42), Expect = 7e-13 Identities = 129/158 (81%) Strand = Plus / Minus Query: 202 agtgtgatcagccgagtttttgagtcgtataccatcacggttttgcaatttgcgcacttc 261 |||||||||| ||||| ||||||||| ||| ||| | |||| |||||||||| || ||| Sbjct: 561 agtgtgatcacccgagattttgagtcatattccagctcggtactgcaatttgcacatttc 502 Query: 262 acgttgttcgtcgcaccgccgctctcgatcgacagtattgtcccgtagaaggaaagattt 321 || ||||| || | |||||| || || |||||||| ||||| |||||||||| ||| Sbjct: 501 actttgtttgttgtaccgccactggagactgacagtatagtcccaaagaaggaaaggttt 442 Query: 322 tcagtaccgcaattcggacaaggtcccttcaggattaa 359 |||||||| ||||| ||||| || ||||| |||||||| Sbjct: 441 tcagtaccacaattaggacatggccccttaaggattaa 404
>gb|AY104292.1| Zea mays PCO099333 mRNA sequence Length = 1025 Score = 85.7 bits (43), Expect = 2e-13 Identities = 133/163 (81%) Strand = Plus / Minus Query: 499 aagaagaacagtcctagagcaacaatagtcgctggaacattcagcaggaacatcttcaag 558 |||||||| ||| | ||||| |||| || || |||||||| || || |||||||||||| Sbjct: 419 aagaagaatagtgccagagctacaacagctgcgggaacatttaggagcaacatcttcaag 360 Query: 559 tagtcaacggtgaggtcgctgtaaaccttccgactccgtagactgcacctggggccttcc 618 |||||||| || | ||| ||||| ||||| ||||||||||| ||||| || || |||||| Sbjct: 359 tagtcaacagtcaagtcactgtagacctttcgactccgtaggctgcatcttggaccttcc 300 Query: 619 gtcactatgtcgcttccatcttgcttgagtctgagcttgagtt 661 || ||||||||||| |||| ||| ||||| ||||| |||| Sbjct: 299 tgtacaatgtcgcttccttctttctttagtctcagctttagtt 257
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 506 acagtcctagagcaacaatagtcgctggaacattcagcaggaacatcttcaagtagtcaa 565 ||||||||||||||| | |||| ||||||||||| |||||||||||||| | |||||||| Sbjct: 35877839 acagtcctagagcaagagtagttgctggaacatttagcaggaacatctttaggtagtcaa 35877898 Query: 566 cggt 569 |||| Sbjct: 35877899 cggt 35877902 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 459 ctggaatacattgacctcaaagccagtcagctcatcaatgaagaagaac 507 |||||||| |||| |||||||||||||| |||||| |||||||||||| Sbjct: 35877604 ctggaatatgttgatctcaaagccagtcaactcatcgatgaagaagaac 35877652 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Plus Query: 595 cgtagactgcacctggggccttccgtcactatgtcgcttccatctt 640 ||||||||||||||||| ||||| || || ||||| ||||| |||| Sbjct: 35878186 cgtagactgcacctgggaccttcggtgacaatgtcacttccgtctt 35878231 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Plus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctgg 455 |||||| ||||||||||| ||||| ||||||| ||||| || || |||||||| Sbjct: 35877457 caatattagaggcaaagcagcaaaccatgtgaaaatgaaaccgaaaggctctgg 35877510 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Plus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggaca 341 ||||| || |||||| |||||||||| ||||||| || ||||||||||| Sbjct: 35877237 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggaca 35877286
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 506 acagtcctagagcaacaatagtcgctggaacattcagcaggaacatcttcaagtagtcaa 565 ||||||||||||||| | |||| ||||||||||| |||||||||||||| | |||||||| Sbjct: 83286 acagtcctagagcaagagtagttgctggaacatttagcaggaacatctttaggtagtcaa 83227 Query: 566 cggt 569 |||| Sbjct: 83226 cggt 83223 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 459 ctggaatacattgacctcaaagccagtcagctcatcaatgaagaagaac 507 |||||||| |||| |||||||||||||| |||||| |||||||||||| Sbjct: 83521 ctggaatatgttgatctcaaagccagtcaactcatcgatgaagaagaac 83473 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggaca 341 ||||| || |||||| |||||||||| ||||||| || ||||||||||| Sbjct: 83888 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggaca 83839 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Minus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctgg 455 |||||| ||||||||||| ||||| ||||||| ||||| || || |||||||| Sbjct: 83668 caatattagaggcaaagcagcaaaccatgtgaaaatgaaaccgaaaggctctgg 83615 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Minus Query: 595 cgtagactgcacctggggccttccgtcactatgtcgcttccatctt 640 ||||||||||||||||| ||||| || || ||||| ||||| |||| Sbjct: 82939 cgtagactgcacctgggaccttcggtgacaatgtcacttccgtctt 82894
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 506 acagtcctagagcaacaatagtcgctggaacattcagcaggaacatcttcaagtagtcaa 565 ||||||||||||||| | |||| ||||||||||| |||||||||||||| | |||||||| Sbjct: 35967969 acagtcctagagcaagagtagttgctggaacatttagcaggaacatctttaggtagtcaa 35968028 Query: 566 cggt 569 |||| Sbjct: 35968029 cggt 35968032 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 459 ctggaatacattgacctcaaagccagtcagctcatcaatgaagaagaac 507 |||||||| |||| |||||||||||||| |||||| |||||||||||| Sbjct: 35967734 ctggaatatgttgatctcaaagccagtcaactcatcgatgaagaagaac 35967782 Score = 44.1 bits (22), Expect = 0.58 Identities = 40/46 (86%) Strand = Plus / Plus Query: 595 cgtagactgcacctggggccttccgtcactatgtcgcttccatctt 640 ||||||||||||||||| ||||| || || ||||| ||||| |||| Sbjct: 35968316 cgtagactgcacctgggaccttcggtgacaatgtcacttccgtctt 35968361 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Plus Query: 402 caatatcagaggcaaagcggcaaaatatgtgaatatgaagccaaagggctctgg 455 |||||| ||||||||||| ||||| ||||||| ||||| || || |||||||| Sbjct: 35967587 caatattagaggcaaagcagcaaaccatgtgaaaatgaaaccgaaaggctctgg 35967640 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Plus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggaca 341 ||||| || |||||| |||||||||| ||||||| || ||||||||||| Sbjct: 35967367 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggaca 35967416
>ref|XM_507596.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_A10.128 mRNA Length = 1442 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttc 588 ||||||||||| |||||||||||||| ||||| || || || | ||| ||||| ||||| Sbjct: 808 gctggaacatttagcaggaacatcttgaagtaatcgacagtcaagtcactgtagaccttt 749 Query: 589 cgactccgtagactgca 605 ||||| || |||||||| Sbjct: 748 cgacttcgaagactgca 732 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 352 a 352 | Sbjct: 988 a 988
>ref|XM_483430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1442 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttc 588 ||||||||||| |||||||||||||| ||||| || || || | ||| ||||| ||||| Sbjct: 808 gctggaacatttagcaggaacatcttgaagtaatcgacagtcaagtcactgtagaccttt 749 Query: 589 cgactccgtagactgca 605 ||||| || |||||||| Sbjct: 748 cgacttcgaagactgca 732 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 352 a 352 | Sbjct: 988 a 988
>ref|XM_507301.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_A10.128 mRNA Length = 1445 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttc 588 ||||||||||| |||||||||||||| ||||| || || || | ||| ||||| ||||| Sbjct: 808 gctggaacatttagcaggaacatcttgaagtaatcgacagtcaagtcactgtagaccttt 749 Query: 589 cgactccgtagactgca 605 ||||| || |||||||| Sbjct: 748 cgacttcgaagactgca 732 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 352 a 352 | Sbjct: 988 a 988
>dbj|AK070382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052D06, full insert sequence Length = 1445 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttc 588 ||||||||||| |||||||||||||| ||||| || || || | ||| ||||| ||||| Sbjct: 808 gctggaacatttagcaggaacatcttgaagtaatcgacagtcaagtcactgtagaccttt 749 Query: 589 cgactccgtagactgca 605 ||||| || |||||||| Sbjct: 748 cgacttcgaagactgca 732 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 352 a 352 | Sbjct: 988 a 988
>gb|BT012947.1| Lycopersicon esculentum clone 114116R, mRNA sequence Length = 1252 Score = 50.1 bits (25), Expect = 0.009 Identities = 100/125 (80%) Strand = Plus / Minus Query: 481 ccagtcagctcatcaatgaagaagaacagtcctagagcaacaatagtcgctggaacattc 540 ||||||| ||||| | |||||| |||| ||| || ||||||| || || |||||||| Sbjct: 725 ccagtcaaatcatcgaggaagaaaaacaatccaagcgcaacaacagcagcgggaacattt 666 Query: 541 agcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttccgactccgtaga 600 |||| ||||||||||| ||| ||||| ||||| ||||||||||| | ||| || ||| Sbjct: 665 agcaagaacatcttcaggtaatcaacataaaggtcactgtaaacctttctactacggaga 606 Query: 601 ctgca 605 ||||| Sbjct: 605 ctgca 601
>dbj|AK121104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069O17, full insert sequence Length = 3855 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 3490 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 3431 Query: 352 a 352 | Sbjct: 3430 a 3430 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||||||||||||| ||||| Sbjct: 3250 gctggaacatttagcaggaacatcttgaagta 3219
>dbj|AK104593.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B08, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 984 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 925 Query: 352 a 352 | Sbjct: 924 a 924 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttc 588 ||||||||||| || ||||||||||| ||||| || || || | ||| ||||| ||||| Sbjct: 744 gctggaacatttagtaggaacatcttgaagtaatcgacagtcaagtcactgtagaccttt 685 Query: 589 cgactccgtagactgca 605 ||||| || |||||||| Sbjct: 684 cgacttcgaagactgca 668
>dbj|AK061736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D09, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 351 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 984 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 925 Query: 352 a 352 | Sbjct: 924 a 924 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagtagtcaacggtgaggtcgctgtaaaccttc 588 ||||||||||| || ||||||||||| ||||| || || || | ||| ||||| ||||| Sbjct: 744 gctggaacatttagtaggaacatcttgaagtaatcgacagtcaagtcactgtagaccttt 685 Query: 589 cgactccgtagactgca 605 ||||| || |||||||| Sbjct: 684 cgacttcgaagactgca 668
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||||||||||||| ||||| Sbjct: 26173541 gctggaacatttagcaggaacatcttgaagta 26173510 Score = 44.1 bits (22), Expect = 0.58 Identities = 49/58 (84%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtccct 349 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||| Sbjct: 26176707 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtccct 26176650 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 292 gacagtattgtcccgtagaaggaaagattttca 324 |||||||| ||||| ||||||||||||||||| Sbjct: 13094986 gacagtatagtcccaaagaaggaaagattttca 13095018 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||| ||||||||| ||||| Sbjct: 13100057 gctggaacatttagcatgaacatcttgaagta 13100088
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||||||||||||| ||||| Sbjct: 117472 gctggaacatttagcaggaacatcttgaagta 117441 Score = 44.1 bits (22), Expect = 0.58 Identities = 49/58 (84%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtccct 349 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||| Sbjct: 120638 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtccct 120581
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||||||||||||| ||||| Sbjct: 6466 gctggaacatttagcaggaacatcttgaagta 6435 Score = 44.1 bits (22), Expect = 0.58 Identities = 49/58 (84%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtccct 349 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||| Sbjct: 9632 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtccct 9575
>emb|CR391969.13| Zebrafish DNA sequence from clone CH211-131C14 in linkage group 5, complete sequence Length = 159249 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 atcatactacaacacagaagcagcaa 96 ||||| |||||||||||||||||||| Sbjct: 84250 atcatcctacaacacagaagcagcaa 84275
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5, complete sequence Length = 142908 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 atcatactacaacacagaagcagcaa 96 ||||| |||||||||||||||||||| Sbjct: 38023 atcatcctacaacacagaagcagcaa 37998
>ref|XM_481498.1| Oryza sativa (japonica cultivar-group), mRNA Length = 612 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttca 324 |||||||| ||||| ||||||||||||||||| Sbjct: 500 gacagtatagtcccaaagaaggaaagattttca 468 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||| ||||||||| ||||| Sbjct: 260 gctggaacatttagcatgaacatcttgaagta 229
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24, complete sequence Length = 150085 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 292 gacagtattgtcccgtagaaggaaagattttca 324 |||||||| ||||| ||||||||||||||||| Sbjct: 88465 gacagtatagtcccaaagaaggaaagattttca 88433 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||| ||||||||| ||||| Sbjct: 83464 gctggaacatttagcatgaacatcttgaagta 83433
>gb|AC113600.19| Mus musculus chromosome 6, clone RP23-110A19, complete sequence Length = 212705 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 catactacaacacagaagcag 93 ||||||||||||||||||||| Sbjct: 140581 catactacaacacagaagcag 140561
>gb|AC157599.3| Mus musculus BAC clone RP23-138L13 from chromosome 17, complete sequence Length = 185556 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 tagatatctacagaaaatcatacta 79 |||||||||||||||||| |||||| Sbjct: 61260 tagatatctacagaaaattatacta 61236
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 292 gacagtattgtcccgtagaaggaaagattttca 324 |||||||| ||||| ||||||||||||||||| Sbjct: 75506 gacagtatagtcccaaagaaggaaagattttca 75538 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 529 gctggaacattcagcaggaacatcttcaagta 560 ||||||||||| |||| ||||||||| ||||| Sbjct: 80577 gctggaacatttagcatgaacatcttgaagta 80608
>ref|NM_179091.1| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.2 mRNA, complete cds Length = 1092 Score = 40.1 bits (20), Expect = 9.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 498 gaagaagaacagtcctagagcaacaatagtcgctggaacattca 541 |||||| || ||||| |||||||||| || ||||||||||||| Sbjct: 740 gaagaaaaagagtccgagagcaacaacggttgctggaacattca 697
>ref|NM_179092.1| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.3 mRNA, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 9.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 498 gaagaagaacagtcctagagcaacaatagtcgctggaacattca 541 |||||| || ||||| |||||||||| || ||||||||||||| Sbjct: 825 gaagaaaaagagtccgagagcaacaacggttgctggaacattca 782
>ref|NM_118418.2| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.1 mRNA, complete cds Length = 1417 Score = 40.1 bits (20), Expect = 9.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 498 gaagaagaacagtcctagagcaacaatagtcgctggaacattca 541 |||||| || ||||| |||||||||| || ||||||||||||| Sbjct: 825 gaagaaaaagagtccgagagcaacaacggttgctggaacattca 782
>gb|AC147924.2| Xenopus tropicalis clone CH216-60D12, complete sequence Length = 186585 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tatctacagaaaatcatact 78 |||||||||||||||||||| Sbjct: 35428 tatctacagaaaatcatact 35409
>ref|XM_447516.1| Candida glabrata CBS138 hypothetical protein (CAGL0I06116g) partial mRNA Length = 2043 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 tcaatgaagaagaacagtcc 512 |||||||||||||||||||| Sbjct: 329 tcaatgaagaagaacagtcc 348
>gb|BT000905.1| Arabidopsis thaliana clone C105179 unknown protein (At4g22890) mRNA, complete cds Length = 1006 Score = 40.1 bits (20), Expect = 9.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 498 gaagaagaacagtcctagagcaacaatagtcgctggaacattca 541 |||||| || ||||| |||||||||| || ||||||||||||| Sbjct: 654 gaagaaaaagagtccgagagcaacaacggttgctggaacattca 611
>emb|AL391807.13| Human DNA sequence from clone RP3-525N10 on chromosome 6 Contains the 5' end of the BAI3 gene for brain-specific angiogenesis inhibitor 3, a novel gene and a CpG island, complete sequence Length = 73228 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 aaatatgtgaatatgaagcc 443 |||||||||||||||||||| Sbjct: 57818 aaatatgtgaatatgaagcc 57799
>emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20 on chromosome Xq22.2-22.3, complete sequence Length = 167943 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttgcagacttgacaattcca 124 |||||||||||||||||||| Sbjct: 58135 ttgcagacttgacaattcca 58116
>gb|AY050904.1| Arabidopsis thaliana At4g22890 mRNA sequence Length = 1327 Score = 40.1 bits (20), Expect = 9.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 498 gaagaagaacagtcctagagcaacaatagtcgctggaacattca 541 |||||| || ||||| |||||||||| || ||||||||||||| Sbjct: 718 gaagaaaaagagtccgagagcaacaacggttgctggaacattca 675
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 tcaatgaagaagaacagtcc 512 |||||||||||||||||||| Sbjct: 582809 tcaatgaagaagaacagtcc 582828
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58 Length = 193550 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 506 acagtcctagagcaacaatagtcgctggaacattca 541 ||||||| |||||||||| || ||||||||||||| Sbjct: 50728 acagtccgagagcaacaacggttgctggaacattca 50693
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project) Length = 139316 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 506 acagtcctagagcaacaatagtcgctggaacattca 541 ||||||| |||||||||| || ||||||||||||| Sbjct: 21641 acagtccgagagcaacaacggttgctggaacattca 21606
>gb|AC108752.9| Homo sapiens 3 BAC RP11-314M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167753 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 tacagaaaatcatactacaacacagaag 90 ||||||| |||||||| ||||||||||| Sbjct: 44431 tacagaacatcatactgcaacacagaag 44404
>gb|AC160128.2| Mus musculus BAC clone RP23-286G17 from chromosome 12, complete sequence Length = 202315 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 aaggtcccttcaggattaag 360 |||||||||||||||||||| Sbjct: 79288 aaggtcccttcaggattaag 79307
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 agtttcattcatgccaatca 40 |||||||||||||||||||| Sbjct: 4333839 agtttcattcatgccaatca 4333820
>gb|AY088992.1| Arabidopsis thaliana clone 13264 mRNA, complete sequence Length = 1321 Score = 40.1 bits (20), Expect = 9.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 498 gaagaagaacagtcctagagcaacaatagtcgctggaacattca 541 |||||| || ||||| |||||||||| || ||||||||||||| Sbjct: 823 gaagaaaaagagtccgagagcaacaacggttgctggaacattca 780
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 agtttcattcatgccaatca 40 |||||||||||||||||||| Sbjct: 36657 agtttcattcatgccaatca 36638
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 agtttcattcatgccaatca 40 |||||||||||||||||||| Sbjct: 157598 agtttcattcatgccaatca 157579
>emb|BX544885.3| Mouse DNA sequence from clone RP23-402E14 on chromosome 4, complete sequence Length = 49635 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ctaggttttctatacatgca 21 |||||||||||||||||||| Sbjct: 17575 ctaggttttctatacatgca 17556
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 acttcacgttgttcgtcgca 276 |||||||||||||||||||| Sbjct: 701595 acttcacgttgttcgtcgca 701576 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,679,561 Number of Sequences: 3902068 Number of extensions: 5679561 Number of successful extensions: 126928 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126693 Number of HSP's gapped (non-prelim): 234 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)