ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11j12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466737.1| Oryza sativa (japonica cultivar-group), mRNA 113 5e-22
2dbj|AK100073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5ref|XM_466735.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-10
6ref|NM_104393.3| Arabidopsis thaliana ATP binding / kinase/ prot... 46 0.098
7gb|AY096404.1| Arabidopsis thaliana putative protein kinase (At1... 46 0.098
8gb|AY063963.1| Arabidopsis thaliana putative protein kinase (At1... 46 0.098
9gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7... 46 0.098
10ref|NM_104222.1| Arabidopsis thaliana kinase AT1G53440 mRNA, com... 40 6.0
11emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on ch... 40 6.0
12gb|AC161451.4| Mus musculus BAC clone RP23-405D12 from chromosom... 40 6.0
13gb|DQ431198.1| Homo sapiens interleukin 9 receptor (IL9Rps) pseu... 40 6.0
14emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region;... 40 6.0
15gb|AE006462.1| Homo sapiens 16p13.3 sequence section 1 of 8 40 6.0
16dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 6.0
17gb|AY071830.1| Homo sapiens interleukin 9 receptor (IL9R) gene, ... 40 6.0
18emb|CR394541.16| Zebrafish DNA sequence from clone DKEY-51M5 in ... 40 6.0
19emb|BX664613.17| Zebrafish DNA sequence from clone DKEY-5P5 in l... 40 6.0
20gb|L39064.1|HUMIL9RA Homo sapiens interleukin 9 receptor precurs... 40 6.0
21gb|L39062.1|HUMIL9R Homo sapiens interleukin 9 receptor IL9R pse... 40 6.0
22gb|AC161759.5| Mus musculus BAC clone RP23-436J17 from chromosom... 40 6.0
23emb|Z84723.1|HSLAW2 Human DNA sequence from phage LAW2 from a co... 40 6.0
24gb|AF319782.2| Callitrichine herpesvirus 3 strain CJ0149, comple... 40 6.0
25gb|M84016.1|HUMSUBTDA Human subtelomeric DNA sequence 40 6.0 
>ref|XM_466737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3376

 Score =  113 bits (57), Expect = 5e-22
 Identities = 145/175 (82%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                        
Query: 92   agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 151
            ||||| |||||||||||||||| |||||||  ||||||||||||||||||||||| ||  
Sbjct: 2961 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 2903

                                                                        
Query: 152  nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 211
                 ||| || |||||||| ||  |||||||| | ||||| ||||| |||||||   ||
Sbjct: 2902 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 2843

                                                                   
Query: 212  gatgcatggacactttgagcatactctggagctttgtaccctattgttcccttca 266
            ||||||||| |||  |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 2842 gatgcatggccacactgagcatactctggagctatataccctatagttcccttca 2788
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>dbj|AK100073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170D14, full
            insert sequence
          Length = 3376

 Score =  113 bits (57), Expect = 5e-22
 Identities = 145/175 (82%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                        
Query: 92   agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 151
            ||||| |||||||||||||||| |||||||  ||||||||||||||||||||||| ||  
Sbjct: 2961 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 2903

                                                                        
Query: 152  nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 211
                 ||| || |||||||| ||  |||||||| | ||||| ||||| |||||||   ||
Sbjct: 2902 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 2843

                                                                   
Query: 212  gatgcatggacactttgagcatactctggagctttgtaccctattgttcccttca 266
            ||||||||| |||  |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 2842 gatgcatggccacactgagcatactctggagctatataccctatagttcccttca 2788
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 120/147 (81%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                            
Query: 92       agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 151
                ||||| |||||||||||||||| |||||||  ||||||||||||||||||||||| ||  
Sbjct: 24350269 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 24350211

                                                                            
Query: 152      nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 211
                     ||| || |||||||| ||  |||||||| | ||||| ||||| |||||||   ||
Sbjct: 24350210 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 24350151

                                           
Query: 212      gatgcatggacactttgagcatactct 238
                ||||||||| |||  ||||||||||||
Sbjct: 24350150 gatgcatggccacactgagcatactct 24350124



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 92       agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgt 146
                ||||| |||||| ||||||||| |||||||  ||||||||||||||||| |||||
Sbjct: 24337978 agttcttctccataaagttgacaatgttgagctcattctcaaacataggatctgt 24337924
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>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0407A09
          Length = 103788

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 120/147 (81%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                         
Query: 92    agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 151
             ||||| |||||||||||||||| |||||||  ||||||||||||||||||||||| ||  
Sbjct: 79807 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 79749

                                                                         
Query: 152   nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 211
                  ||| || |||||||| ||  |||||||| | ||||| ||||| |||||||   ||
Sbjct: 79748 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 79689

                                        
Query: 212   gatgcatggacactttgagcatactct 238
             ||||||||| |||  ||||||||||||
Sbjct: 79688 gatgcatggccacactgagcatactct 79662



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 92    agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgt 146
             ||||| |||||| ||||||||| |||||||  ||||||||||||||||| |||||
Sbjct: 67516 agttcttctccataaagttgacaatgttgagctcattctcaaacataggatctgt 67462
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>ref|XM_466735.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2994

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 140/175 (80%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                        
Query: 92   agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 151
            ||||| |||||| ||||||||| |||||||  ||||||||||||||||| ||||| ||  
Sbjct: 2716 agttcttctccataaagttgacaatgttgagctcattctcaaacataggatctgttgg-t 2658

                                                                        
Query: 152  nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 211
                 ||| || |||||||| ||  |||||||| | |||| |||||| ||||||| | | 
Sbjct: 2657 cttttacctgtcagcatctctagaagtactattccaaaaccgtaaacatccccataggtc 2598

                                                                   
Query: 212  gatgcatggacactttgagcatactctggagctttgtaccctattgttcccttca 266
            ||||||| | |||  |  ||||||||||||||| | |||||||| ||||||||||
Sbjct: 2597 gatgcattgccacactctgcatactctggagctatataccctatggttcccttca 2543
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>ref|NM_104393.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT1G55200 mRNA, complete cds
          Length = 2153

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 222  cactttgagcatactctggagct 244
            |||||||||||||||||||||||
Sbjct: 1677 cactttgagcatactctggagct 1655
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>gb|AY096404.1| Arabidopsis thaliana putative protein kinase (At1g55200) mRNA,
            complete cds
          Length = 2062

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 222  cactttgagcatactctggagct 244
            |||||||||||||||||||||||
Sbjct: 1663 cactttgagcatactctggagct 1641
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>gb|AY063963.1| Arabidopsis thaliana putative protein kinase (At1g55200) mRNA,
            complete cds
          Length = 2169

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 222  cactttgagcatactctggagct 244
            |||||||||||||||||||||||
Sbjct: 1677 cactttgagcatactctggagct 1655
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>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete
             sequence
          Length = 101954

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 222   cactttgagcatactctggagct 244
             |||||||||||||||||||||||
Sbjct: 88528 cactttgagcatactctggagct 88506
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>ref|NM_104222.1| Arabidopsis thaliana kinase AT1G53440 mRNA, complete cds
          Length = 3108

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 230  gcatactctggagctttgtaccctattgttcc 261
            ||||||||||||||  |||| |||||||||||
Sbjct: 2522 gcatactctggagccatgtaacctattgttcc 2491
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>emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on chromosome 13 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) pseudogene,
             complete sequence
          Length = 92179

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    tagtatcttatctttatagttcct 98
             ||||||||| ||||||||||||||
Sbjct: 65325 tagtatcttttctttatagttcct 65348
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>gb|AC161451.4| Mus musculus BAC clone RP23-405D12 from chromosome 15, complete sequence
          Length = 190621

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    aagcctgaatgttcgatgaa 303
              ||||||||||||||||||||
Sbjct: 185101 aagcctgaatgttcgatgaa 185120
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>gb|DQ431198.1| Homo sapiens interleukin 9 receptor (IL9Rps) pseudogene, complete
            sequence; and DNA-directed RNA polymerases III 12.5 kDa
            polypeptide (POLR3K), U11/U12 snRNP 25 kDa protein
            (C16orf33), RHBDG1 (C16orf8), DNA-3-methyladenine
            glycosylase (MPG), -14 gene protein (C16orf35),
            hemoglobin zeta subunit (HBZ), HBD (HBD), alpha globin
            (HBA2), alpha globin (HBA1), theta globin (HBQ1), and
            putative RNA-binding protein Luc7-like 1 (LUC7L) genes,
            complete cds
          Length = 214426

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  agagctctggcctgcccaag 354
            ||||||||||||||||||||
Sbjct: 1682 agagctctggcctgcccaag 1663
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>emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region; segment 2/2
          Length = 158661

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    agagctctggcctgcccaag 354
              ||||||||||||||||||||
Sbjct: 135419 agagctctggcctgcccaag 135438
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>gb|AE006462.1| Homo sapiens 16p13.3 sequence section 1 of 8
          Length = 258002

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   agagctctggcctgcccaag 354
             ||||||||||||||||||||
Sbjct: 21753 agagctctggcctgcccaag 21734
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    attgttcccttcagcccagt 273
              ||||||||||||||||||||
Sbjct: 221400 attgttcccttcagcccagt 221381
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>gb|AY071830.1| Homo sapiens interleukin 9 receptor (IL9R) gene, complete cds
          Length = 15446

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   agagctctggcctgcccaag 354
             ||||||||||||||||||||
Sbjct: 11521 agagctctggcctgcccaag 11540
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>emb|CR394541.16| Zebrafish DNA sequence from clone DKEY-51M5 in linkage group 22,
             complete sequence
          Length = 64881

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   atggattgatgcatggacac 224
             ||||||||||||||||||||
Sbjct: 34549 atggattgatgcatggacac 34530
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>emb|BX664613.17| Zebrafish DNA sequence from clone DKEY-5P5 in linkage group 22,
            complete sequence
          Length = 121435

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  atggattgatgcatggacac 224
            ||||||||||||||||||||
Sbjct: 9116 atggattgatgcatggacac 9135
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>gb|L39064.1|HUMIL9RA Homo sapiens interleukin 9 receptor precursor (IL9R) gene, complete cds
          Length = 17073

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   agagctctggcctgcccaag 354
             ||||||||||||||||||||
Sbjct: 11681 agagctctggcctgcccaag 11700
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>gb|L39062.1|HUMIL9R Homo sapiens interleukin 9 receptor IL9R pseudogene, exons 1-9
          Length = 13649

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  agagctctggcctgcccaag 354
            ||||||||||||||||||||
Sbjct: 7853 agagctctggcctgcccaag 7872
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>gb|AC161759.5| Mus musculus BAC clone RP23-436J17 from chromosome 15, complete
             sequence
          Length = 108899

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   aagcctgaatgttcgatgaa 303
             ||||||||||||||||||||
Sbjct: 11034 aagcctgaatgttcgatgaa 11053
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>emb|Z84723.1|HSLAW2 Human DNA sequence from phage LAW2 from a contig from the tip of the
             short arm of chromosome 16, spanning 2Mb of 16p13.3
             Contains Interleukin 9 receptor pseudogene
          Length = 17000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   agagctctggcctgcccaag 354
             ||||||||||||||||||||
Sbjct: 11115 agagctctggcctgcccaag 11096
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>gb|AF319782.2| Callitrichine herpesvirus 3 strain CJ0149, complete genome
          Length = 149696

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   tgaattcattctcaaacata 138
             ||||||||||||||||||||
Sbjct: 21746 tgaattcattctcaaacata 21727
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>gb|M84016.1|HUMSUBTDA Human subtelomeric DNA sequence
          Length = 2930

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  agagctctggcctgcccaag 354
            ||||||||||||||||||||
Sbjct: 2410 agagctctggcctgcccaag 2391


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,961,383
Number of Sequences: 3902068
Number of extensions: 2961383
Number of successful extensions: 49076
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49014
Number of HSP's gapped (non-prelim): 62
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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