Clone Information

BLAST Search Result

Clone Name	rbasd11j11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC097175.2\| Oryza sativa (japonica cultivar-group) chromosome...	287	2e-74
2	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	287	2e-74
3	gb\|AY107485.1\| Zea mays PCO090409 mRNA sequence	94	7e-16
4	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	46	0.14
5	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
7	gb\|AC109602.6\| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom...	46	0.14
8	emb\|AL731787.3\|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb...	46	0.14
9	ref\|NM_101286.2\| Arabidopsis thaliana protein binding / ubiquiti...	44	0.55
10	gb\|BT017227.1\| Zea mays clone EL01N0302E02.c mRNA sequence	44	0.55
11	gb\|AC007576.3\| Arabidopsis thaliana chromosome I BAC F7A19 genom...	44	0.55
12	gb\|BT004591.1\| Arabidopsis thaliana At1g14200 gene, complete cds	44	0.55
13	gb\|AC148336.4\| Mus musculus BAC clone RP23-21J15 from chromosome...	42	2.2
14	gb\|AC166055.5\| Mus musculus BAC clone RP23-462B19 from chromosom...	42	2.2
15	emb\|AJ586799.1\| Humulus lupulus microsatellite DNA, clone EMFV058	42	2.2
16	emb\|CR932133.1\|CNS0KYFI Paramecium tetraurelia macronuclear, pla...	42	2.2
17	gb\|AC138768.3\| Mus musculus BAC clone RP24-465E14 from chromosom...	42	2.2
18	gb\|AC121838.2\| Mus musculus BAC clone RP24-74O18 from 1, complet...	42	2.2
19	emb\|AL356241.8\| Human DNA sequence from clone RP11-58K5 on chrom...	42	2.2
20	emb\|AL035691.17\|HS249F5 Human DNA sequence from clone RP1-249F5 ...	42	2.2
21	gb\|AC162856.2\| Mus musculus chromosome 8, clone RP23-51I4, compl...	42	2.2
22	gb\|AC116675.11\| Mus musculus chromosome 8, clone RP23-16M20, com...	42	2.2
23	dbj\|AK090950.1\| Homo sapiens cDNA FLJ33631 fis, clone BRAMY2022532	42	2.2
24	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
25	dbj\|AP005797.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
26	gb\|AC007016.5\|AC007016 Homo sapiens chromosome 4 clone C0478G20 ...	42	2.2
27	gb\|AC132436.3\| Mus musculus BAC clone RP23-226J18 from 1, comple...	42	2.2
28	emb\|X75258.1\|HSDNARA H.sapiens DNA from recombination area	42	2.2
29	gb\|CP000112.1\| Desulfovibrio desulfuricans G20, complete genome	40	8.6
30	gb\|AC150866.2\| Bos taurus BAC CH240-290G4 (Children's Hospital ...	40	8.6
31	gb\|BT015619.1\| Arabidopsis thaliana At1g14200 mRNA sequence	40	8.6
32	gb\|AC137969.9\| Mus musculus chromosome 7, clone RP23-267N11, com...	40	8.6
33	gb\|AC145748.4\| Mus musculus BAC clone RP23-31L10 from chromosome...	40	8.6
34	emb\|CR933344.1\| Paramecium tetraurelia macronuclear, plasma memb...	40	8.6
35	gb\|AC110819.5\| Mus musculus BAC clone RP23-239K2 from chromosome...	40	8.6
36	gb\|AC125344.2\| Mus musculus BAC clone RP24-332H21 from 12, compl...	40	8.6
37	ref\|XM_541605.2\| PREDICTED: Canis familiaris similar to cytochro...	40	8.6
38	emb\|AJ248284.1\|CNSPAX02 Pyrococcus abyssi complete genome; segme...	40	8.6
39	emb\|AL731896.10\| Mouse DNA sequence from clone RP23-348D11 on ch...	40	8.6
40	gb\|AC113436.28\| Pan troglodytes clone rp43-97f19, complete sequence	40	8.6
41	gb\|AC025895.9\| Homo sapiens, clone RP11-610C20, complete sequence	40	8.6
42	gb\|AC092039.2\| Homo sapiens chromosome 3 clone RP11-114P15, comp...	40	8.6
43	gb\|AC093545.1\| Homo sapiens chromosome X clone RP5-1015P16A, com...	40	8.6
44	gb\|AC079402.5\| Homo sapiens BAC clone RP11-597E15 from 2, comple...	40	8.6
45	gb\|AC112721.3\| Homo sapiens BAC clone RP11-704F14 from 2, comple...	40	8.6
46	gb\|AC115978.23\| Mus musculus chromosome 14, clone RP24-83J8, com...	40	8.6
47	gb\|AC117695.15\| Mus musculus chromosome 1, clone RP23-450I19, co...	40	8.6
48	gb\|AC007486.1\|AC007486 Homo sapiens clone DJ1015P16A, complete s...	40	8.6
49	gb\|AC113061.9\| Mus musculus chromosome 14, clone RP23-255H22, co...	40	8.6
50	gb\|AC110206.21\| Mus musculus chromosome 19, clone RP23-155H17, c...	40	8.6
51	gb\|AC139382.3\| Mus musculus BAC clone RP23-30B24 from 12, comple...	40	8.6
52	emb\|AL627125.8\| Mouse DNA sequence from clone RP23-466N19 on chr...	40	8.6
53	emb\|AL672066.10\| Mouse DNA sequence from clone RP23-311G7 on chr...	40	8.6

>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
             complete sequence
          Length = 138584

 Score =  287 bits (145), Expect = 2e-74
 Identities = 268/309 (86%)
 Strand = Plus / Plus

                                                                         
Query: 322   cgtttgcagggccatcagctctgacctcctcatggctgctctctattcgatcaacgttgc 381
             ||||| ||||||||||||||||||| ||||||||||||  ||| | || | ||| |||||
Sbjct: 83048 cgtttccagggccatcagctctgacttcctcatggctgtcctccactctaccaatgttgc 83107

                                                                         
Query: 382   tagtctcgcttaagtcttttgtctcatcagatggcagctcgaaccggcaaactgggcagg 441
             ||| |||| | |||||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 83108 taggctcgttcaagtcttttgtctcctcagaaggcagctcaaaccggcaaaccgggcagg 83167

                                                                         
Query: 442   aactatggagttcaagccatggcaggatacatggtgagtgaaacttatgttcacaaggca 501
             ||||||| | ||||||||||||||||||||| |  || ||||||||||||||||| ||||
Sbjct: 83168 aactatgtaattcaagccatggcaggatacaagaagaatgaaacttatgttcacatggca 83227

                                                                         
Query: 502   actgcttagcctgggaccctagatcaaggtcatcaagacaaactgaacagctgacaacct 561
               || |||||||||||||| |  ||||| |||||||| || |||||||||||||||||||
Sbjct: 83228 tttgtttagcctgggaccccacctcaagatcatcaaggcagactgaacagctgacaacct 83287

                                                                         
Query: 562   cttcgattttgacagtgggcagggcttcgactgcttctttcttcgcgggaggggtaccat 621
             |||||||||| ||||||||||| ||||| || || |||||||| || |||||||||||||
Sbjct: 83288 cttcgattttcacagtgggcagcgcttcaaccgcctctttctttgcaggaggggtaccat 83347

                      
Query: 622   accggcttg 630
              ||| ||||
Sbjct: 83348 tccgacttg 83356



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 148   atcaactatgccctgcatttggattggttccagaag 183
             ||||||| |||||||||||||| |||||||||||||
Sbjct: 82898 atcaactgtgccctgcatttgggttggttccagaag 82933



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 240   gagaataggccattaaaccaagggacaagggcccaaggtctgttactg 287
             ||||||||  |||| |||||||| ||||  ||||| ||||||||||||
Sbjct: 82990 gagaatagctcattcaaccaaggaacaatagcccagggtctgttactg 83037

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  287 bits (145), Expect = 2e-74
 Identities = 268/309 (86%)
 Strand = Plus / Plus

                                                                            
Query: 322      cgtttgcagggccatcagctctgacctcctcatggctgctctctattcgatcaacgttgc 381
                ||||| ||||||||||||||||||| ||||||||||||  ||| | || | ||| |||||
Sbjct: 23879213 cgtttccagggccatcagctctgacttcctcatggctgtcctccactctaccaatgttgc 23879272

                                                                            
Query: 382      tagtctcgcttaagtcttttgtctcatcagatggcagctcgaaccggcaaactgggcagg 441
                ||| |||| | |||||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 23879273 taggctcgttcaagtcttttgtctcctcagaaggcagctcaaaccggcaaaccgggcagg 23879332

                                                                            
Query: 442      aactatggagttcaagccatggcaggatacatggtgagtgaaacttatgttcacaaggca 501
                ||||||| | ||||||||||||||||||||| |  || ||||||||||||||||| ||||
Sbjct: 23879333 aactatgtaattcaagccatggcaggatacaagaagaatgaaacttatgttcacatggca 23879392

                                                                            
Query: 502      actgcttagcctgggaccctagatcaaggtcatcaagacaaactgaacagctgacaacct 561
                  || |||||||||||||| |  ||||| |||||||| || |||||||||||||||||||
Sbjct: 23879393 tttgtttagcctgggaccccacctcaagatcatcaaggcagactgaacagctgacaacct 23879452

                                                                            
Query: 562      cttcgattttgacagtgggcagggcttcgactgcttctttcttcgcgggaggggtaccat 621
                |||||||||| ||||||||||| ||||| || || |||||||| || |||||||||||||
Sbjct: 23879453 cttcgattttcacagtgggcagcgcttcaaccgcctctttctttgcaggaggggtaccat 23879512

                         
Query: 622      accggcttg 630
                 ||| ||||
Sbjct: 23879513 tccgacttg 23879521



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 148      atcaactatgccctgcatttggattggttccagaag 183
                ||||||| |||||||||||||| |||||||||||||
Sbjct: 23879063 atcaactgtgccctgcatttgggttggttccagaag 23879098



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 240      gagaataggccattaaaccaagggacaagggcccaaggtctgttactg 287
                ||||||||  |||| |||||||| ||||  ||||| ||||||||||||
Sbjct: 23879155 gagaatagctcattcaaccaaggaacaatagcccagggtctgttactg 23879202

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>gb|AY107485.1| Zea mays PCO090409 mRNA sequence
          Length = 615

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 186/231 (80%), Gaps = 1/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 396 tcttttgtctcatcagatggcagctcgaaccggcaaactgggcaggaactatggagttca 455
           ||||| ||||| ||||| ||||||||||||||||| || ||||| || || ||||| |||
Sbjct: 351 tctttcgtctcttcagacggcagctcgaaccggcacacggggcaagagctgtggagctca 292

                                                                       
Query: 456 agccatggcaggatacatggtgagtgaaacttatgttcacaaggcaactgcttagcctgg 515
           |||||||||||||| || |  ||||| ||| ||||  |||| ||||  || || ||| ||
Sbjct: 291 agccatggcaggatgcaagaagagtggaacctatgcccacagggcatttg-ttcgccggg 233

                                                                       
Query: 516 gaccctagatcaaggtcatcaagacaaactgaacagctgacaacctcttcgattttgaca 575
           ||||| || ||||| || || || || || |||||||||||  ||||  | || | ||||
Sbjct: 232 gaccccagctcaagatcgtcgaggcagaccgaacagctgacggcctccgctatctggaca 173

                                                              
Query: 576 gtgggcagggcttcgactgcttctttcttcgcgggaggggtaccataccgg 626
           |||||||| |||||||| || ||| ||||||| |||||||| || ||||||
Sbjct: 172 gtgggcagagcttcgaccgcctctctcttcgccggaggggtgccgtaccgg 122



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 108 attctcagatgtacgatcattattcaca 135
           ||||||||||||| || |||||||||||
Sbjct: 615 attctcagatgtatgagcattattcaca 588

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 156      tgccctgcatttggattggttccagaa 182
                |||||||||||||| ||||||||||||
Sbjct: 22061219 tgccctgcatttgggttggttccagaa 22061245

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 156      tgccctgcatttggattggttccagaa 182
                |||||||||||||| ||||||||||||
Sbjct: 17875254 tgccctgcatttgggttggttccagaa 17875280

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 156      tgccctgcatttggattggttccagaa 182
                |||||||||||||| ||||||||||||
Sbjct: 22054248 tgccctgcatttgggttggttccagaa 22054274

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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 156   tgccctgcatttggattggttccagaa 182
             |||||||||||||| ||||||||||||
Sbjct: 87063 tgccctgcatttgggttggttccagaa 87037

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>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 156   tgccctgcatttggattggttccagaa 182
             |||||||||||||| ||||||||||||
Sbjct: 94452 tgccctgcatttgggttggttccagaa 94478

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>ref|NM_101286.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT1G14200 mRNA, complete cds
          Length = 817

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 476 tgagtgaaacttatgttcacaaggca 501
           ||||||||||||||||| ||||||||
Sbjct: 528 tgagtgaaacttatgtttacaaggca 503

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>gb|BT017227.1| Zea mays clone EL01N0302E02.c mRNA sequence
          Length = 1081

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 414  ggcagctcgaaccggcaaactgggcaggaactatggagttcaagccatgg 463
            ||||||||||| ||||| || |||||||| || ||||| |||| ||||||
Sbjct: 1010 ggcagctcgaagcggcagaccgggcaggagctgtggaggtcaaaccatgg 1059

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>gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete
             sequence
          Length = 112126

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 476   tgagtgaaacttatgttcacaaggca 501
             ||||||||||||||||| ||||||||
Sbjct: 97723 tgagtgaaacttatgtttacaaggca 97748

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>gb|BT004591.1| Arabidopsis thaliana At1g14200 gene, complete cds
          Length = 540

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 476 tgagtgaaacttatgttcacaaggca 501
           ||||||||||||||||| ||||||||
Sbjct: 399 tgagtgaaacttatgtttacaaggca 374

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>gb|AC148336.4| Mus musculus BAC clone RP23-21J15 from chromosome 18, complete sequence
          Length = 238060

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    caggaggcagctgctgatcag 204
              |||||||||||||||||||||
Sbjct: 153331 caggaggcagctgctgatcag 153311

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>gb|AC166055.5| Mus musculus BAC clone RP23-462B19 from chromosome 9, complete sequence
          Length = 180798

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      gcaaatctatgccaaagcagt 24
              |||||||||||||||||||||
Sbjct: 117137 gcaaatctatgccaaagcagt 117117

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>emb|AJ586799.1| Humulus lupulus microsatellite DNA, clone EMFV058
          Length = 373

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 444 ctatggagttcaagccatggcaggataca 472
           |||||||| |||||||||||||| |||||
Sbjct: 178 ctatggagctcaagccatggcagaataca 150

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>emb|CR932133.1|CNS0KYFI Paramecium tetraurelia macronuclear, plasma membrane calcium ATPase,
            putative, complete gene
          Length = 3809

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 162  gcatttggattggttccagaa 182
            |||||||||||||||||||||
Sbjct: 2825 gcatttggattggttccagaa 2805

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>gb|AC138768.3| Mus musculus BAC clone RP24-465E14 from chromosome 18, complete sequence
          Length = 158065

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    caggaggcagctgctgatcag 204
              |||||||||||||||||||||
Sbjct: 132699 caggaggcagctgctgatcag 132719

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>gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complete sequence
          Length = 180961

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    gattggttccagaagcaggag 189
              |||||||||||||||||||||
Sbjct: 163628 gattggttccagaagcaggag 163648

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>emb|AL356241.8| Human DNA sequence from clone RP11-58K5 on chromosome 13, complete
             sequence
          Length = 171068

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   gcatttggattggttccagaa 182
             |||||||||||||||||||||
Sbjct: 98074 gcatttggattggttccagaa 98054

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>emb|AL035691.17|HS249F5 Human DNA sequence from clone RP1-249F5 on chromosome 6q26-27 Contains a
              novel gene, the MAS1 oncogene, the 5' end of the IGF2R gene
              for insulin-like growth factor 2 receptor
              (cation-independent mannose-6 phosphate receptor,
              Insulin-like growth factor-2 receptor (mannose-6-phosphate
              receptor, cation-independent)) (MPRI, CD222, CIMPR, M6P-R)
              and two CpG islands, complete sequence
          Length = 129968

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 174    gttccagaagcaggaggcagc 194
              |||||||||||||||||||||
Sbjct: 108206 gttccagaagcaggaggcagc 108226

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>gb|AC162856.2| Mus musculus chromosome 8, clone RP23-51I4, complete sequence
          Length = 247161

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 506   cttagcctgggaccctagatc 526
             |||||||||||||||||||||
Sbjct: 59126 cttagcctgggaccctagatc 59106

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>gb|AC116675.11| Mus musculus chromosome 8, clone RP23-16M20, complete sequence
          Length = 214196

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 506    cttagcctgggaccctagatc 526
              |||||||||||||||||||||
Sbjct: 117610 cttagcctgggaccctagatc 117590

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>dbj|AK090950.1| Homo sapiens cDNA FLJ33631 fis, clone BRAMY2022532
          Length = 2746

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   gaaagaagagttctactgaca 94
            |||||||||||||||||||||
Sbjct: 2040 gaaagaagagttctactgaca 2060

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 186     ggaggcagctgctgatcagtcaaag 210
               ||||||||| |||||||||||||||
Sbjct: 6779475 ggaggcagcggctgatcagtcaaag 6779499

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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1131G07
          Length = 133992

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 186    ggaggcagctgctgatcagtcaaag 210
              ||||||||| |||||||||||||||
Sbjct: 100528 ggaggcagcggctgatcagtcaaag 100552

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>gb|AC007016.5|AC007016 Homo sapiens chromosome 4 clone C0478G20 map 4p16, complete sequence
          Length = 172568

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     gaaagaagagttctactgaca 94
              |||||||||||||||||||||
Sbjct: 129458 gaaagaagagttctactgaca 129478

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>gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, complete sequence
          Length = 248067

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    gattggttccagaagcaggag 189
              |||||||||||||||||||||
Sbjct: 241847 gattggttccagaagcaggag 241827

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>emb|X75258.1|HSDNARA H.sapiens DNA from recombination area
          Length = 3428

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  gttccagaagcaggaggcagc 194
            |||||||||||||||||||||
Sbjct: 2773 gttccagaagcaggaggcagc 2753

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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 584     ggcttcgactgcttctttcttcgcggga 611
               ||||||| ||||||||||||| ||||||
Sbjct: 2262658 ggcttcggctgcttctttctttgcggga 2262685

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>gb|AC150866.2| Bos taurus  BAC CH240-290G4 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 170911

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 571    tgacagtgggcagggcttcg 590
              ||||||||||||||||||||
Sbjct: 134667 tgacagtgggcagggcttcg 134648

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>gb|BT015619.1| Arabidopsis thaliana At1g14200 mRNA sequence
          Length = 537

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 478 agtgaaacttatgttcacaaggca 501
           ||||||||||||||| ||||||||
Sbjct: 394 agtgaaacttatgtttacaaggca 371

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>gb|AC137969.9| Mus musculus chromosome 7, clone RP23-267N11, complete sequence
          Length = 176711

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    catggtgagtgaaacttatg 490
              ||||||||||||||||||||
Sbjct: 120337 catggtgagtgaaacttatg 120318

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>gb|AC145748.4| Mus musculus BAC clone RP23-31L10 from chromosome 5, complete sequence
          Length = 220208

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ctgttactgtcctctctgtc 298
             ||||||||||||||||||||
Sbjct: 50297 ctgttactgtcctctctgtc 50278

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>emb|CR933344.1| Paramecium tetraurelia macronuclear, plasma membrane calcium ATPase,
            putative, complete gene
          Length = 3860

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  catttggattggttccagaa 182
            ||||||||||||||||||||
Sbjct: 2749 catttggattggttccagaa 2730

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>gb|AC110819.5| Mus musculus BAC clone RP23-239K2 from chromosome 6, complete sequence
          Length = 200741

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   attggttccagaagcaggaggcag 193
             ||||| ||||||||||||||||||
Sbjct: 20284 attggatccagaagcaggaggcag 20307

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>gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, complete sequence
          Length = 179908

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   catggtgagtgaaacttatg 490
             ||||||||||||||||||||
Sbjct: 76523 catggtgagtgaaacttatg 76504

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>ref|XM_541605.2| PREDICTED: Canis familiaris similar to cytochrome P450, family 2,
            subfamily S, polypeptide 1 (LOC484491), mRNA
          Length = 1485

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  ggttccagaagcaggaggca 192
            ||||||||||||||||||||
Sbjct: 1265 ggttccagaagcaggaggca 1284

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>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6
          Length = 293250

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 87   tactgacaaagttgcatcactattctca 114
            |||||| ||| |||||||||||||||||
Sbjct: 4781 tactgagaaacttgcatcactattctca 4808

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>emb|AL731896.10| Mouse DNA sequence from clone RP23-348D11 on chromosome 11 Contains a
              ribosomal protein L15 (Rpl15) pseudogene and a SNARE
              protein Ykt (0610042I15Rik) pseudogene, complete sequence
          Length = 226786

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 528    aggtcatcaagacaaactgaacag 551
              |||||||||||||||||| |||||
Sbjct: 221121 aggtcatcaagacaaactaaacag 221144

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>gb|AC113436.28| Pan troglodytes clone rp43-97f19, complete sequence
          Length = 166631

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    catttgtgttactgtcctcg 317
              ||||||||||||||||||||
Sbjct: 141460 catttgtgttactgtcctcg 141479

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>gb|AC025895.9| Homo sapiens, clone RP11-610C20, complete sequence
          Length = 179113

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   tgggaccctagatcaaggtc 532
             ||||||||||||||||||||
Sbjct: 90954 tgggaccctagatcaaggtc 90935

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>gb|AC092039.2| Homo sapiens chromosome 3 clone RP11-114P15, complete sequence
          Length = 166560

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gtcttttgtctcatcagatg 414
              ||||||||||||||||||||
Sbjct: 127968 gtcttttgtctcatcagatg 127987

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>gb|AC093545.1| Homo sapiens chromosome X clone RP5-1015P16A, complete sequence
          Length = 174725

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aagatggaaagaagagttct 87
             ||||||||||||||||||||
Sbjct: 83264 aagatggaaagaagagttct 83283

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>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence
          Length = 86973

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   catcactattctcagatgta 120
             ||||||||||||||||||||
Sbjct: 56776 catcactattctcagatgta 56757

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>gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, complete sequence
          Length = 188829

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   tgggaccctagatcaaggtc 532
             ||||||||||||||||||||
Sbjct: 19760 tgggaccctagatcaaggtc 19741

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>gb|AC115978.23| Mus musculus chromosome 14, clone RP24-83J8, complete sequence
          Length = 200865

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ttattcacagcagtagagaa 146
             ||||||||||||||||||||
Sbjct: 12209 ttattcacagcagtagagaa 12228

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>gb|AC117695.15| Mus musculus chromosome 1, clone RP23-450I19, complete sequence
          Length = 188171

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    cctcctcatggctgctctct 365
              ||||||||||||||||||||
Sbjct: 142024 cctcctcatggctgctctct 142043

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>gb|AC007486.1|AC007486 Homo sapiens clone DJ1015P16A, complete sequence
          Length = 174725

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aagatggaaagaagagttct 87
             ||||||||||||||||||||
Sbjct: 83264 aagatggaaagaagagttct 83283

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>gb|AC113061.9| Mus musculus chromosome 14, clone RP23-255H22, complete sequence
          Length = 190623

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ttattcacagcagtagagaa 146
             ||||||||||||||||||||
Sbjct: 23678 ttattcacagcagtagagaa 23659

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>gb|AC110206.21| Mus musculus chromosome 19, clone RP23-155H17, complete sequence
          Length = 199583

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   agaataggccattaaaccaa 260
             ||||||||||||||||||||
Sbjct: 46867 agaataggccattaaaccaa 46886

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>gb|AC139382.3| Mus musculus BAC clone RP23-30B24 from 12, complete sequence
          Length = 180698

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   ttcacaaggcaactgcttag 510
             ||||||||||||||||||||
Sbjct: 38194 ttcacaaggcaactgcttag 38175

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>emb|AL627125.8| Mouse DNA sequence from clone RP23-466N19 on chromosome 4, complete
              sequence
          Length = 179068

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tctatgccaaagcagtcaca 28
              ||||||||||||||||||||
Sbjct: 176157 tctatgccaaagcagtcaca 176138

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>emb|AL672066.10| Mouse DNA sequence from clone RP23-311G7 on chromosome X, complete
             sequence
          Length = 152281

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   agaagcaggaggcagctgct 198
             ||||||||||||||||||||
Sbjct: 23600 agaagcaggaggcagctgct 23619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,114,202
Number of Sequences: 3902068
Number of extensions: 5114202
Number of successful extensions: 98516
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98223
Number of HSP's gapped (non-prelim): 293
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result