Clone Name | rbasd11j10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479524.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2108 Score = 224 bits (113), Expect = 3e-55 Identities = 316/383 (82%), Gaps = 3/383 (0%) Strand = Plus / Minus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagaccctctgg 264 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| | || Sbjct: 1816 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagaccttacgg 1757 Query: 265 tactccagagtatcgccgtttgtcttcttcaactccacaagatggaagtcaggggtgacc 324 || || || ||||| || ||||||||||| | |||||||||||| |||| ||||| ||| Sbjct: 1756 tattcaagtgtatcaccatttgtcttctttagctccacaagatgaaagtttggggtaacc 1697 Query: 325 tcgaatatctcggcatcaatagacatgacgcctttccttccgggcttggagccttccatc 384 ||||||||||| |||||||| ||| || ||||||||||| |||||||||||||||||| Sbjct: 1696 tcgaatatctctgcatcaatgcccataacacctttccttccaggcttggagccttccatc 1637 Query: 385 ttcaacatgccaccatccttcttgacgagcttcagctgcatgccctttgcgatgtcctcg 444 ||||||| |||||||| ||||| |||||||| | ||| |||||| || || ||||| Sbjct: 1636 ttcaacagtccaccatctttctttgtgagcttcaaccgcaagcccttggcaatatcctca 1577 Query: 445 atctttgacacgatcgtcgaagccgagttggtggatgtgaacttggactccctcttctta 504 ||||| || | ||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 1576 atcttagatatgattgttgaagctgtactggtggatgtgaatttggactc---tttctta 1520 Query: 505 tcgttgtcctcaaacataccggagaggtcgagtccagttgagagggagattatatcaaaa 564 || |||||||||||||| |||||||| ||||||||||| | || |||||||||||| Sbjct: 1519 tcagactcctcaaacataccagagaggtcaagtccagttgacaaagaaattatatcaaaa 1460 Query: 565 gcattcatgttggagagcttctt 587 ||||||| |||||| ||||||| Sbjct: 1459 gcattcaagttggacggcttctt 1437
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 224 bits (113), Expect = 3e-55 Identities = 316/383 (82%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagaccctctgg 264 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| | || Sbjct: 28673531 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagaccttacgg 28673590 Query: 265 tactccagagtatcgccgtttgtcttcttcaactccacaagatggaagtcaggggtgacc 324 || || || ||||| || ||||||||||| | |||||||||||| |||| ||||| ||| Sbjct: 28673591 tattcaagtgtatcaccatttgtcttctttagctccacaagatgaaagtttggggtaacc 28673650 Query: 325 tcgaatatctcggcatcaatagacatgacgcctttccttccgggcttggagccttccatc 384 ||||||||||| |||||||| ||| || ||||||||||| |||||||||||||||||| Sbjct: 28673651 tcgaatatctctgcatcaatgcccataacacctttccttccaggcttggagccttccatc 28673710 Query: 385 ttcaacatgccaccatccttcttgacgagcttcagctgcatgccctttgcgatgtcctcg 444 ||||||| |||||||| ||||| |||||||| | ||| |||||| || || ||||| Sbjct: 28673711 ttcaacagtccaccatctttctttgtgagcttcaaccgcaagcccttggcaatatcctca 28673770 Query: 445 atctttgacacgatcgtcgaagccgagttggtggatgtgaacttggactccctcttctta 504 ||||| || | ||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 28673771 atcttagatatgattgttgaagctgtactggtggatgtgaatttggactc---tttctta 28673827 Query: 505 tcgttgtcctcaaacataccggagaggtcgagtccagttgagagggagattatatcaaaa 564 || |||||||||||||| |||||||| ||||||||||| | || |||||||||||| Sbjct: 28673828 tcagactcctcaaacataccagagaggtcaagtccagttgacaaagaaattatatcaaaa 28673887 Query: 565 gcattcatgttggagagcttctt 587 ||||||| |||||| ||||||| Sbjct: 28673888 gcattcaagttggacggcttctt 28673910
>dbj|AK072868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O10, full insert sequence Length = 2108 Score = 224 bits (113), Expect = 3e-55 Identities = 316/383 (82%), Gaps = 3/383 (0%) Strand = Plus / Minus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagaccctctgg 264 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| | || Sbjct: 1816 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagaccttacgg 1757 Query: 265 tactccagagtatcgccgtttgtcttcttcaactccacaagatggaagtcaggggtgacc 324 || || || ||||| || ||||||||||| | |||||||||||| |||| ||||| ||| Sbjct: 1756 tattcaagtgtatcaccatttgtcttctttagctccacaagatgaaagtttggggtaacc 1697 Query: 325 tcgaatatctcggcatcaatagacatgacgcctttccttccgggcttggagccttccatc 384 ||||||||||| |||||||| ||| || ||||||||||| |||||||||||||||||| Sbjct: 1696 tcgaatatctctgcatcaatgcccataacacctttccttccaggcttggagccttccatc 1637 Query: 385 ttcaacatgccaccatccttcttgacgagcttcagctgcatgccctttgcgatgtcctcg 444 ||||||| |||||||| ||||| |||||||| | ||| |||||| || || ||||| Sbjct: 1636 ttcaacagtccaccatctttctttgtgagcttcaaccgcaagcccttggcaatatcctca 1577 Query: 445 atctttgacacgatcgtcgaagccgagttggtggatgtgaacttggactccctcttctta 504 ||||| || | ||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 1576 atcttagatatgattgttgaagctgtactggtggatgtgaatttggactc---tttctta 1520 Query: 505 tcgttgtcctcaaacataccggagaggtcgagtccagttgagagggagattatatcaaaa 564 || |||||||||||||| |||||||| ||||||||||| | || |||||||||||| Sbjct: 1519 tcagactcctcaaacataccagagaggtcaagtccagttgacaaagaaattatatcaaaa 1460 Query: 565 gcattcatgttggagagcttctt 587 ||||||| |||||| ||||||| Sbjct: 1459 gcattcaagttggacggcttctt 1437
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 224 bits (113), Expect = 3e-55 Identities = 316/383 (82%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagaccctctgg 264 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| | || Sbjct: 48701 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagaccttacgg 48760 Query: 265 tactccagagtatcgccgtttgtcttcttcaactccacaagatggaagtcaggggtgacc 324 || || || ||||| || ||||||||||| | |||||||||||| |||| ||||| ||| Sbjct: 48761 tattcaagtgtatcaccatttgtcttctttagctccacaagatgaaagtttggggtaacc 48820 Query: 325 tcgaatatctcggcatcaatagacatgacgcctttccttccgggcttggagccttccatc 384 ||||||||||| |||||||| ||| || ||||||||||| |||||||||||||||||| Sbjct: 48821 tcgaatatctctgcatcaatgcccataacacctttccttccaggcttggagccttccatc 48880 Query: 385 ttcaacatgccaccatccttcttgacgagcttcagctgcatgccctttgcgatgtcctcg 444 ||||||| |||||||| ||||| |||||||| | ||| |||||| || || ||||| Sbjct: 48881 ttcaacagtccaccatctttctttgtgagcttcaaccgcaagcccttggcaatatcctca 48940 Query: 445 atctttgacacgatcgtcgaagccgagttggtggatgtgaacttggactccctcttctta 504 ||||| || | ||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 48941 atcttagatatgattgttgaagctgtactggtggatgtgaatttggactc---tttctta 48997 Query: 505 tcgttgtcctcaaacataccggagaggtcgagtccagttgagagggagattatatcaaaa 564 || |||||||||||||| |||||||| ||||||||||| | || |||||||||||| Sbjct: 48998 tcagactcctcaaacataccagagaggtcaagtccagttgacaaagaaattatatcaaaa 49057 Query: 565 gcattcatgttggagagcttctt 587 ||||||| |||||| ||||||| Sbjct: 49058 gcattcaagttggacggcttctt 49080
>dbj|AK059418.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D08, full insert sequence Length = 1229 Score = 196 bits (99), Expect = 7e-47 Identities = 281/341 (82%), Gaps = 3/341 (0%) Strand = Plus / Minus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagaccctctgg 264 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| | || Sbjct: 1012 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagaccttacgg 953 Query: 265 tactccagagtatcgccgtttgtcttcttcaactccacaagatggaagtcaggggtgacc 324 || || || ||||| || ||||||||||| | |||||||||||| |||| ||||| ||| Sbjct: 952 tattcaagtgtatcaccatttgtcttctttagctccacaagatgaaagtttggggtaacc 893 Query: 325 tcgaatatctcggcatcaatagacatgacgcctttccttccgggcttggagccttccatc 384 ||||||||||| |||||||| ||| || ||||||||||| |||||||||||||||||| Sbjct: 892 tcgaatatctctgcatcaatgcccataacacctttccttccaggcttggagccttccatc 833 Query: 385 ttcaacatgccaccatccttcttgacgagcttcagctgcatgccctttgcgatgtcctcg 444 ||||||| |||||||| ||||| |||||||| | ||| |||||| || || ||||| Sbjct: 832 ttcaacagtccaccatctttctttgtgagcttcaaccgcaagcccttggcaatatcctca 773 Query: 445 atctttgacacgatcgtcgaagccgagttggtggatgtgaacttggactccctcttctta 504 ||||| || | ||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 772 atcttagatatgattgttgaagctgtactggtggatgtgaatttggactc---tttctta 716 Query: 505 tcgttgtcctcaaacataccggagaggtcgagtccagttga 545 || |||||||||||||| |||||||| ||||||||||| Sbjct: 715 tcagactcctcaaacataccagagaggtcaagtccagttga 675
>ref|XM_479525.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1283 Score = 168 bits (85), Expect = 2e-38 Identities = 240/291 (82%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 297 ctccacaagatggaagtcaggggtgacctcgaatatctcggcatcaatagacatgacgcc 356 |||||||||||| |||| ||||| |||||||||||||| |||||||| ||| || || Sbjct: 1053 ctccacaagatgaaagtttggggtaacctcgaatatctctgcatcaatgcccataacacc 994 Query: 357 tttccttccgggcttggagccttccatcttcaacatgccaccatccttcttgacgagctt 416 ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 993 tttccttccaggcttggagccttccatcttcaacagtccaccatctttctttgtgagctt 934 Query: 417 cagctgcatgccctttgcgatgtcctcgatctttgacacgatcgtcgaagccgagttggt 476 || | ||| |||||| || || ||||| ||||| || | ||| || ||||| | |||| Sbjct: 933 caaccgcaagcccttggcaatatcctcaatcttagatatgattgttgaagctgtactggt 874 Query: 477 ggatgtgaacttggactccctcttcttatcgttgtcctcaaacataccggagaggtcgag 536 ||||||||| |||||||| |||||||| |||||||||||||| |||||||| || Sbjct: 873 ggatgtgaatttggactc---tttcttatcagactcctcaaacataccagagaggtcaag 817 Query: 537 tccagttgagagggagattatatcaaaagcattcatgttggagagcttctt 587 ||||||||| | || ||||||||||||||||||| |||||| ||||||| Sbjct: 816 tccagttgacaaagaaattatatcaaaagcattcaagttggacggcttctt 766 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagacc 258 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| Sbjct: 1132 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagacc 1079
>dbj|AK058819.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G04, full insert sequence Length = 1283 Score = 168 bits (85), Expect = 2e-38 Identities = 240/291 (82%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 297 ctccacaagatggaagtcaggggtgacctcgaatatctcggcatcaatagacatgacgcc 356 |||||||||||| |||| ||||| |||||||||||||| |||||||| ||| || || Sbjct: 1053 ctccacaagatgaaagtttggggtaacctcgaatatctctgcatcaatgcccataacacc 994 Query: 357 tttccttccgggcttggagccttccatcttcaacatgccaccatccttcttgacgagctt 416 ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 993 tttccttccaggcttggagccttccatcttcaacagtccaccatctttctttgtgagctt 934 Query: 417 cagctgcatgccctttgcgatgtcctcgatctttgacacgatcgtcgaagccgagttggt 476 || | ||| |||||| || || ||||| ||||| || | ||| || ||||| | |||| Sbjct: 933 caaccgcaagcccttggcaatatcctcaatcttagatatgattgttgaagctgtactggt 874 Query: 477 ggatgtgaacttggactccctcttcttatcgttgtcctcaaacataccggagaggtcgag 536 ||||||||| |||||||| |||||||| |||||||||||||| |||||||| || Sbjct: 873 ggatgtgaatttggactc---tttcttatcagactcctcaaacataccagagaggtcaag 817 Query: 537 tccagttgagagggagattatatcaaaagcattcatgttggagagcttctt 587 ||||||||| | || ||||||||||||||||||| |||||| ||||||| Sbjct: 816 tccagttgacaaagaaattatatcaaaagcattcaagttggacggcttctt 766 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 205 tgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaagacc 258 ||||||||||||||||||||||||| || || |||||||| ||||| |||||| Sbjct: 1132 tgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagacc 1079
>gb|AY107513.1| Zea mays PCO092477 mRNA sequence Length = 1254 Score = 125 bits (63), Expect = 2e-25 Identities = 174/211 (82%) Strand = Plus / Minus Query: 197 gctcgccttgccaagcccagactatgtccttcagcgccggcctcatctcctggttaaaga 256 |||| |||||||||||||| ||||| ||||| || || |||||||| || ||||| | || Sbjct: 1009 gctcaccttgccaagcccacactatttccttgagtgcgggcctcatttcttggttcagga 950 Query: 257 ccctctggtactccagagtatcgccgtttgtcttcttcaactccacaagatggaagtcag 316 || | || ||||| ||||| ||||| || |||||||| | |||||||||||| |||| || Sbjct: 949 ccttttgatactctagagtgtcgccattcgtcttctttatctccacaagatgaaagttag 890 Query: 317 gggtgacctcgaatatctcggcatcaatagacatgacgcctttccttccgggcttggagc 376 || | ||||| |||| |||||||| ||| ||| || ||||||||||||||||| || Sbjct: 889 ggctaacctcaaatacttcggcatcgatacccattacccctttccttccgggctttgaag 830 Query: 377 cttccatcttcaacatgccaccatccttctt 407 |||||||||| |||| |||||||||||||| Sbjct: 829 cttccatctttaacaaaccaccatccttctt 799 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Minus Query: 538 ccagttgagagggagattatatcaaaagcattcatgttgg 577 |||||||| || || ||||||||||| ||||||||||||| Sbjct: 668 ccagttgatagagatattatatcaaatgcattcatgttgg 629
>ref|XM_503624.1| Yarrowia lipolytica CLIB122, YALI0E06391g predicted mRNA Length = 1410 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 agccttccatcttcaacatgcca 396 ||||||||||||||||||||||| Sbjct: 62 agccttccatcttcaacatgcca 84
>emb|AL121767.6|CNS01DSC Human chromosome 14 DNA sequence BAC C-2593I21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208309 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 acaaacatggcataataaaaatt 101 ||||||||||||||||||||||| Sbjct: 205415 acaaacatggcataataaaaatt 205393
>emb|AL133233.2|CNS01DUA Human chromosome 14 DNA sequence BAC R-34O18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168991 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 acaaacatggcataataaaaatt 101 ||||||||||||||||||||||| Sbjct: 21201 acaaacatggcataataaaaatt 21179
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 374 agccttccatcttcaacatgcca 396 ||||||||||||||||||||||| Sbjct: 724271 agccttccatcttcaacatgcca 724293
>emb|AL591065.17| Mouse DNA sequence from clone RP23-199H17 on chromosome 11 Contains the Myo18a gene for myosin XVIIIa, the Pipox gene for pipecolic acid oxidase, a novel gene (LOC327969), the 5' end of the Sez6 gene for seizure related gene 6 and two CpG islands, complete sequence Length = 220176 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 646 gcagtcatgtcagaagcaggaacggcatct 675 |||||||||||||||| ||| ||||||||| Sbjct: 95150 gcagtcatgtcagaagaaggtacggcatct 95179
>gb|AY110373.1| Zea mays CL46074_1 mRNA sequence Length = 661 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 tgccaagcccagactatgtccttcag 230 ||||| |||||||||||||||||||| Sbjct: 274 tgccaggcccagactatgtccttcag 299
>gb|AC146602.3| Mus musculus BAC clone RP23-309L12 from chromosome 14, complete sequence Length = 198097 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 caaacatggcataataaaaattaca 104 |||||||||||||| |||||||||| Sbjct: 183047 caaacatggcataaaaaaaattaca 183023
>emb|Z81495.1|CEF08G2 Caenorhabditis elegans Cosmid F08G2, complete sequence Length = 30846 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ataataaaaattacagaaaca 110 ||||||||||||||||||||| Sbjct: 8621 ataataaaaattacagaaaca 8601
>gb|AC125056.3| Mus musculus BAC clone RP23-398G2 from chromosome 14, complete sequence Length = 204350 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 caaacatggcataataaaaattaca 104 |||||||||||||| |||||||||| Sbjct: 92105 caaacatggcataaaaaaaattaca 92081
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 ctgctgcggctgcggctcgcc 203 ||||||||||||||||||||| Sbjct: 212514 ctgctgcggctgcggctcgcc 212534
>gb|BC098817.1| Rattus norvegicus cDNA clone IMAGE:7377291, partial cds Length = 1185 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 gaacttggactccctcttctt 503 ||||||||||||||||||||| Sbjct: 233 gaacttggactccctcttctt 213
>gb|AC004668.1| Homo sapiens BAC clone CTA-276O3 from 7, complete sequence Length = 112661 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 aaagatgataactgaagtttacaca 50 |||||||| |||||||||||||||| Sbjct: 61322 aaagatgaaaactgaagtttacaca 61346
>ref|XM_576510.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310015N21 (LOC501095), mRNA Length = 3029 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 gaacttggactccctcttctt 503 ||||||||||||||||||||| Sbjct: 2705 gaacttggactccctcttctt 2685
>gb|AC098718.5| Mus musculus BAC clone RP23-2K11 from chromosome 14, complete sequence Length = 199906 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 80 caaacatggcataataaaaattaca 104 |||||||||||||| |||||||||| Sbjct: 145658 caaacatggcataaaaaaaattaca 145682
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 cgtcgaagccgagttggtgga 479 ||||||||||||||||||||| Sbjct: 5868934 cgtcgaagccgagttggtgga 5868914
>gb|AY110146.1| Zea mays CL63836_1 mRNA sequence Length = 568 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 agggagattatatcaaaagcattca 571 |||||||| |||||||||||||||| Sbjct: 464 agggagatgatatcaaaagcattca 488
>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence Length = 219936 Score = 40.1 bits (20), Expect = 9.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 9 taaataaatctttntnaaaagatgat 34 ||||||||||||| | |||||||||| Sbjct: 90406 taaataaatctttttaaaaagatgat 90431
>ref|XM_483173.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1364 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tgctgcggctgcggctcgcc 203 |||||||||||||||||||| Sbjct: 1064 tgctgcggctgcggctcgcc 1045
>gb|AC113092.25| Mus musculus chromosome 6, clone RP23-309N11, complete sequence Length = 186431 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 ataactgaagtttacacagacata 56 |||| ||||||||||||||||||| Sbjct: 110304 ataaatgaagtttacacagacata 110327
>gb|AY611646.1| Penicillium verruculosum carbon catabolite repressor (creA) gene, complete cds Length = 4522 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 attgctgctgcggctgcggc 198 |||||||||||||||||||| Sbjct: 3041 attgctgctgcggctgcggc 3060
>ref|XM_545462.2| PREDICTED: Canis familiaris similar to Gamma-aminobutyric acid type B receptor, subunit 1 precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) (LOC488340), mRNA Length = 2949 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ccacaagatggaagtcaggg 318 |||||||||||||||||||| Sbjct: 400 ccacaagatggaagtcaggg 381
>gb|BT011337.1| Drosophila melanogaster RH70503 full insert cDNA Length = 1966 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 712 ttgctgctgcggctgcggct 693
>emb|CR937052.2| Rattus norvegicus chromosome 1 BAC CH230-445C15, complete sequence Length = 151854 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 586 tttgtttcttgttccttgcc 605 |||||||||||||||||||| Sbjct: 60726 tttgtttcttgttccttgcc 60707
>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence Length = 174507 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 584 tctttgtttcttgttccttgcctt 607 ||||||| |||||||||||||||| Sbjct: 120039 tctttgtctcttgttccttgcctt 120016
>emb|Z71261.1|CEF21C3 Caenorhabditis elegans Cosmid F21C3, complete sequence Length = 26195 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 catgacgcctttccttccgg 367 |||||||||||||||||||| Sbjct: 11062 catgacgcctttccttccgg 11043
>emb|Z95326.1|HS344F17 Human DNA sequence from clone RP3-344F17 on chromosome 6q22.1-22.33 Contains part of the gene for a novel protein similar to FLJ13018 and other hypothetical proteins, complete sequence Length = 85832 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ataaaaattacagaaacaca 112 |||||||||||||||||||| Sbjct: 84199 ataaaaattacagaaacaca 84218
>gb|BT009953.1| Drosophila melanogaster RH40165 full insert cDNA Length = 1762 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 510 ttgctgctgcggctgcggct 491
>emb|AL356103.8| Human DNA sequence from clone RP4-713A24 on chromosome 1p22.2-31.1 Contains STSs and GSSs, complete sequence Length = 112069 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 agattgctgctgcggctgcggctc 200 |||||||||||||||| ||||||| Sbjct: 25083 agattgctgctgcggcggcggctc 25060
>emb|AL031664.1|HS531H16 Human DNA sequence from clone RP4-531H16 on chromosome 20p11.22-12 Contains the 3' end of the PCSK2 gene for proprotein convertase subtilisin/kexin type 2, the BFSP1 gene for beaded filament structural protein 1 (filensin), the TCTE1P gene for t-complex-associated-testis-expressed 1 pseudogene, the RPS27AP2 gene for ribosomal protein S27a pseudogene 2 and a CpG island, complete sequence Length = 155116 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaggaataacaaacatggca 90 |||||||||||||||||||| Sbjct: 150559 aaggaataacaaacatggca 150540
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tgctttttaaataaatcttt 21 |||||||||||||||||||| Sbjct: 3136375 tgctttttaaataaatcttt 3136356
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 ttcttgacgagcttcagctgcatg 426 ||||||| |||||||||||||||| Sbjct: 875277 ttcttgatgagcttcagctgcatg 875300
>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24 Length = 293350 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 gacacgatcgtcgaagccga 470 |||||||||||||||||||| Sbjct: 282569 gacacgatcgtcgaagccga 282588
>gb|AY580314.1| Selaginella kraussiana putative xyloglucan endotransglucosylase/hydrolase (XTH1) mRNA, complete cds Length = 849 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 gacgagcttcagctgcatgc 427 |||||||||||||||||||| Sbjct: 231 gacgagcttcagctgcatgc 212
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 115983 ttgctgctgcggctgcggct 116002
>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194006 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 191215 ttgctgctgcggctgcggct 191196
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171868 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 153990 ttgctgctgcggctgcggct 154009
>ref|NM_167924.1| Drosophila melanogaster CG13937-RC, transcript variant C (CG13937), mRNA Length = 1728 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 509 ttgctgctgcggctgcggct 490
>gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosome 6, complete sequence Length = 171141 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 accctctggtactccagagt 275 |||||||||||||||||||| Sbjct: 137774 accctctggtactccagagt 137755
>ref|XM_392022.2| PREDICTED: Apis mellifera similar to CG10847-PB, isoform B (LOC408476), mRNA Length = 4064 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 2490 ttgctgctgcggctgcggct 2471
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 18390710 ttgctgctgcggctgcggct 18390691
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tgctgcggctgcggctcgcc 203 |||||||||||||||||||| Sbjct: 24614438 tgctgcggctgcggctcgcc 24614457
>gb|AC092687.3| Homo sapiens BAC clone RP11-791G15 from 2, complete sequence Length = 189174 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 tgtcctcaaacataccggag 528 |||||||||||||||||||| Sbjct: 47457 tgtcctcaaacataccggag 47476
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026F07 Length = 137354 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tgctgcggctgcggctcgcc 203 |||||||||||||||||||| Sbjct: 122698 tgctgcggctgcggctcgcc 122717
>emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chromosome 22, complete sequence Length = 172294 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgaggggaatggaaaggaat 77 |||||||||||||||||||| Sbjct: 3874 cgaggggaatggaaaggaat 3855
>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete sequence Length = 219583 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gaaaggaataacaaacatgg 88 |||||||||||||||||||| Sbjct: 84808 gaaaggaataacaaacatgg 84789
>dbj|AK120408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M08, full insert sequence Length = 3407 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 172 ttgctgctgcggctgcggct 153
>dbj|AK107539.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H07, full insert sequence Length = 1363 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tgctgcggctgcggctcgcc 203 |||||||||||||||||||| Sbjct: 1063 tgctgcggctgcggctcgcc 1044
>gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224120 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 618 gttgctgctgctcaaggaatcaga 641 |||||||||||| ||||||||||| Sbjct: 79120 gttgctgctgctaaaggaatcaga 79097
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 40680 ttgctgctgcggctgcggct 40699
>dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1007G5, complete sequences Length = 184643 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tgctttttaaataaatcttt 21 |||||||||||||||||||| Sbjct: 60888 tgctttttaaataaatcttt 60869
>gb|AC004713.1|AC004713 Drosophila melanogaster, chromosome 3L, region 62B8-62B11, P1 clone DS04710, complete sequence Length = 72327 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 12204 ttgctgctgcggctgcggct 12223
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttgctgctgcggctgcggct 199 |||||||||||||||||||| Sbjct: 18400763 ttgctgctgcggctgcggct 18400744
>gb|AC144778.3| Mus musculus BAC clone RP23-278A22 from 6, complete sequence Length = 187115 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 accctctggtactccagagt 275 |||||||||||||||||||| Sbjct: 54394 accctctggtactccagagt 54375
>gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, complete sequence Length = 208906 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tccatcttcaacatgccacc 398 |||||||||||||||||||| Sbjct: 58683 tccatcttcaacatgccacc 58664
>gb|AC166173.3| Mus musculus BAC clone RP23-101K10 from chromosome 3, complete sequence Length = 196177 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tccatcttcaacatgccacc 398 |||||||||||||||||||| Sbjct: 187606 tccatcttcaacatgccacc 187587
>dbj|AB061316.1| Clostridium thermocellum cdp-ym4 gene for cellodextrin phosphorylase, complete cds Length = 3298 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccgtttgtcttcttcaact 298 |||||||||||||||||||| Sbjct: 2193 gccgtttgtcttcttcaact 2174
>dbj|AB006822.1| Clostridium thermocellum DNA for cellodextrin phosphorylase, complete cds Length = 3286 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccgtttgtcttcttcaact 298 |||||||||||||||||||| Sbjct: 2184 gccgtttgtcttcttcaact 2165 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,673,246 Number of Sequences: 3902068 Number of extensions: 7673246 Number of successful extensions: 163935 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163299 Number of HSP's gapped (non-prelim): 629 length of query: 698 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 675 effective length of database: 17,143,297,704 effective search space: 11571725950200 effective search space used: 11571725950200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)