ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11j08 |
|---|---|
| Clone Library Name | barley_pub |
>SAHH_PHASS (P50249) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 36.2 bits (82), Expect = 0.11 Identities = 13/32 (40%), Positives = 24/32 (75%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A++EGLP L++ED + AD+F + GN+++ + Sbjct: 301 ALMEGLPVLRLEDVVSEADIFVTTTGNKDIIM 332
>NEST_RAT (P21263) Nestin| Length = 1805 Score = 33.5 bits (75), Expect = 0.69 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Frame = -1 Query: 578 SLKRKDRDVPKSSETANGLLHYRTPDPIEKPV------EPLVKQPVDGGTPKLGQTDDSH 417 ++K + ++ + ETA L R ++P+ V+ P D LG D++ Sbjct: 1054 TVKSLETEIIEPLETAEEDLERRKSIDTQEPLWSTEVARETVEPPEDEPPGSLGSVDENR 1113 Query: 416 GRYLSLKREQRVLFA----GIEERNLEDPYGIPKCIAVLEGLPDLQMEDTLKAADLFTDS 249 SL++E + L + +E R +ED +C+ V EGL + Q +++L+ S Sbjct: 1114 ETLTSLEKESQELSSLGKWNVETR-VEDSQ---QCLQVEEGLQEEQHQESLREVKQELPS 1169 Query: 248 KGNRE 234 GN++ Sbjct: 1170 SGNQQ 1174
>ICAL_RAT (P27321) Calpastatin (Calpain inhibitor)| Length = 654 Score = 33.1 bits (74), Expect = 0.90 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -1 Query: 581 PSLKRKDRDVPKSSETANGLLHYRTPDPIE-KPVEPLVKQPVDG-GTPKLGQTDDS 420 P +R+D+++ + + + L R PDP E KP++ VK+ + + KLG+ DD+ Sbjct: 504 PGTERRDKELDDALDELSDSLGQRQPDPDENKPLDDKVKEKIKAEHSEKLGERDDT 559
>SAHH_MEDSA (P50246) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 32.7 bits (73), Expect = 1.2 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A++EGL L +ED + AD+F + GN+++ + Sbjct: 301 ALMEGLQVLTLEDVISEADIFVTTTGNKDIIM 332
>SAHH1_ARATH (O23255) Adenosylhomocysteinase 1 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) Length = 485 Score = 32.3 bits (72), Expect = 1.5 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A++EGL L +ED + AD+F + GN+++ + Sbjct: 301 ALMEGLQVLTLEDVVSEADIFVTTTGNKDIIM 332
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 32.3 bits (72), Expect = 1.5 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Frame = -1 Query: 596 FHGRYPSL-------KRKDRDVPKSSETANGLLHYRTPDPIEKPVEPLVKQPVDGGTP 444 FH R+ L K KD+ ++ + H +TP+P + EP K PV G P Sbjct: 1598 FHSRFMELTRMQQKEKEKDQKPKEAEKQEEPETHPKTPEPAAETKEPEPKAPVSAGLP 1655
>SAHH_LUPLU (Q9SP37) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 32.0 bits (71), Expect = 2.0 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A +EGL L +ED + AD+F + GN+++ + Sbjct: 301 ATMEGLQVLTLEDVVSEADIFVTTTGNKDIIM 332
>SAHH_CATRO (P35007) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 32.0 bits (71), Expect = 2.0 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A +EGL L +ED + AD+F + GN+++ + Sbjct: 301 ATMEGLQVLTLEDVVSEADIFVTTTGNKDIIM 332
>SAHH2_ARATH (Q9LK36) Adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 2) (AdoHcyase 2) Length = 485 Score = 32.0 bits (71), Expect = 2.0 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A++EGL L +ED + AD+F + GN+++ + Sbjct: 301 ALMEGLQVLTLEDVVSEADIFCTTTGNKDIIM 332
>ICAL_MOUSE (P51125) Calpastatin (Calpain inhibitor)| Length = 788 Score = 32.0 bits (71), Expect = 2.0 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -1 Query: 581 PSLKRKDRDVPKSSETANGLLHYRTPDPIE-KPVEPLVKQPV-DGGTPKLGQTDDS 420 P ++KD+++ + + + L R PDP E KP++ VK+ + + KLG+ DD+ Sbjct: 636 PGTEQKDKELDDALDELSDSLGQRPPDPDENKPLDDKVKEKIKPEHSEKLGERDDT 691
>CADH8_MOUSE (P97291) Cadherin-8 precursor| Length = 799 Score = 32.0 bits (71), Expect = 2.0 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Frame = -1 Query: 626 GLQKLEQIDDFHGRYPSLKRKDRDVPKSSETANGLLHYRTPDPIEKPVEPLVK-QPVDGG 450 G + QI+D G ++KR DR+ + + T P+E P E ++K Q ++ Sbjct: 104 GAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDN 163 Query: 449 TPKLGQTDDSHGRYLSLKREQRVL---FAGIEERNLEDP-YG--IPKCIAVLEGLPDLQM 288 P+ +G Y + E +L + + +DP YG ++LEG P + Sbjct: 164 APEF-----LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSI 218 Query: 287 E 285 E Sbjct: 219 E 219
>SAHH_WHEAT (P32112) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 31.6 bits (70), Expect = 2.6 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A++EG+ L +ED + AD+F + GN+++ + Sbjct: 301 ALMEGIQILTLEDVVSEADIFVTTTGNKDIIM 332
>CADH8_RAT (O54800) Cadherin-8 precursor| Length = 799 Score = 31.6 bits (70), Expect = 2.6 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Frame = -1 Query: 626 GLQKLEQIDDFHGRYPSLKRKDRDVPKSSETANGLLHYRTPDPIEKPVEPLVK-QPVDGG 450 G + QI+D G ++KR DR+ + + T P+E P E ++K Q ++ Sbjct: 104 GAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDN 163 Query: 449 TPKLGQTDDSHGRYLSLKREQRVL---FAGIEERNLEDP-YG--IPKCIAVLEGLPDLQM 288 P+ +G Y + E +L + + +DP YG ++LEG P + Sbjct: 164 APEF-----LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSI 218 Query: 287 E 285 E Sbjct: 219 E 219
>CADH8_HUMAN (P55286) Cadherin-8 precursor| Length = 799 Score = 31.6 bits (70), Expect = 2.6 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Frame = -1 Query: 626 GLQKLEQIDDFHGRYPSLKRKDRDVPKSSETANGLLHYRTPDPIEKPVEPLVK-QPVDGG 450 G + QI+D G ++KR DR+ + + T P+E P E ++K Q ++ Sbjct: 104 GAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETSKPLEPPSEFIIKVQDINDN 163 Query: 449 TPKLGQTDDSHGRYLSLKREQRVL---FAGIEERNLEDP-YG--IPKCIAVLEGLPDLQM 288 P+ +G Y + E +L + + +DP YG ++LEG P + Sbjct: 164 APEF-----LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSI 218 Query: 287 E 285 E Sbjct: 219 E 219
>SAHH_ARCFU (O28279) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 405 Score = 31.2 bits (69), Expect = 3.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREV 231 AV++G ++MED K D+F + GNR++ Sbjct: 234 AVMDGFRVMRMEDAAKIGDIFITATGNRDI 263
>GLUQ_XANOR (Q5GZ90) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 299 Score = 31.2 bits (69), Expect = 3.4 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 263 GQLLSAYLPFVNPAILQAQQCILVCHRDPPSSSPQCQQTELSVLF*GSGTSHGNHQFVPV 442 G LL+A+ ++ Q C+ + DPP + P + +L L T+ G H +PV Sbjct: 21 GSLLAAFGSWLLARHAGGQWCVRIEDIDPPRAEPGASERQLRTL-----TAFGLHSDLPV 75 Query: 443 LECHHQQVALQGAL-QVFQLDQEFD 514 + + A A+ ++ + Q F+ Sbjct: 76 IRQSERDAAYTAAINRLLETGQAFE 100
>SAHH_MESCR (P93253) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 30.8 bits (68), Expect = 4.5 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A++EG L +ED + AD+F + GN+++ + Sbjct: 301 ALMEGFQILTLEDVVSEADIFVTTTGNKDIIM 332
>ENT4_YEAST (Q07872) Epsin-4| Length = 247 Score = 30.8 bits (68), Expect = 4.5 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = -1 Query: 614 LEQIDDFHGRYPSLKRKDRDVPKSSETANGLLHYRTPDPIEKPVEPLVKQPVDGGTPKLG 435 +E ++DF + P +RK D+ K S GLL + +EK + +++ TP Sbjct: 105 IEILEDFQVQDPRDERKAEDIQKLSRNVLGLL--QDDGLLEKQRKDVIQFRSSISTPGRK 162 Query: 434 QTDDSHGRYLSLKRE 390 TD+SH + ++ E Sbjct: 163 STDNSHLKLEEMRSE 177
>SAHH_PETCR (Q01781) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 30.4 bits (67), Expect = 5.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A +EGL L +ED + D+F + GN+++ + Sbjct: 301 ATMEGLQVLPLEDVVSEVDIFVTTTGNKDIIM 332
>ATM_DEBHA (Q6BV76) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2948 Score = 30.4 bits (67), Expect = 5.8 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = -1 Query: 614 LEQIDDFHGRYPSLKR-KDRDVPKSSETANGLLHYRTPDPIEKPVEPLVK 468 ++ I +H + +LK K RD+ K+ ++ + Y+T D I K + P++K Sbjct: 2694 IDVIRPYHSKIDTLKADKARDLMKTCQSEDKTERYKTYDKISKKISPVLK 2743
>SAHH_TOBAC (P68173) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Cytokinin-binding protein CBP57) Length = 485 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A +EGL L +ED + D+F + GN+++ + Sbjct: 301 ATMEGLQVLTLEDVVSDVDIFVTTTGNKDIIM 332
>SAHH_NICSY (P68172) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Cytokinin-binding protein CBP57) Length = 485 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A +EGL L +ED + D+F + GN+++ + Sbjct: 301 ATMEGLQVLTLEDVVSDVDIFVTTTGNKDIIM 332
>SAHH_RHIME (Q92TC1) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 466 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREV 231 A ++G +Q+ED + +AD+F + GN++V Sbjct: 288 AAMDGYEVVQLEDVVSSADIFITTTGNKDV 317
>SAHH_LYCES (Q9SWF5) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 485 Score = 29.6 bits (65), Expect = 10.0 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -1 Query: 320 AVLEGLPDLQMEDTLKAADLFTDSKGNREVFL 225 A +EGL L +ED + D+F + GN+++ + Sbjct: 301 ATMEGLQVLFLEDVVSEVDIFVTTTGNKDIIM 332
>K0256_MOUSE (Q6A098) Protein KIAA0256| Length = 1086 Score = 29.6 bits (65), Expect = 10.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 684 TPDQIAKPTEPLAKRHADSGTPKTGT 607 TPDQ KP+ + K H DS +P T Sbjct: 1061 TPDQPPKPSSNMGKEHPDSSSPPQST 1086 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,910,996 Number of Sequences: 219361 Number of extensions: 2627950 Number of successful extensions: 6970 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 6633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6967 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
