ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11j04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477866.1| Oryza sativa (japonica cultivar-group), mRNA Length = 947 Score = 224 bits (113), Expect = 3e-55 Identities = 170/189 (89%) Strand = Plus / Minus Query: 213 gagggagtaggcgttgaggacgacgaggagaacgaggatgatggaggcgatgaggccgag 272 |||||||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |||| Sbjct: 678 gagggagtaggcgttgaggaaggcgaggaggacgagaacgatggcggcgatgagggcgag 619 Query: 273 gcaggtggcgctgccgatgtggcggcagaacttgtcgtagatgttgcagatcttgttcca 332 | |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 618 gaaggtggagctgccgatgtggcggcagaacttgccgtagacgttgcatatcttgttcca 559 Query: 333 ccgcgtgtgcgagttccccttcagccccacccaggccacggcccccgccgtgccggttgc 392 ||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||| || Sbjct: 558 ccgggtgtgggagttccccttcagtcccacccacgccacggcccccgctgtcccggtcgc 499 Query: 393 cgacgccat 401 ||||||||| Sbjct: 498 cgacgccat 490
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 224 bits (113), Expect = 3e-55 Identities = 170/189 (89%) Strand = Plus / Minus Query: 213 gagggagtaggcgttgaggacgacgaggagaacgaggatgatggaggcgatgaggccgag 272 |||||||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |||| Sbjct: 14936941 gagggagtaggcgttgaggaaggcgaggaggacgagaacgatggcggcgatgagggcgag 14936882 Query: 273 gcaggtggcgctgccgatgtggcggcagaacttgtcgtagatgttgcagatcttgttcca 332 | |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 14936881 gaaggtggagctgccgatgtggcggcagaacttgccgtagacgttgcatatcttgttcca 14936822 Query: 333 ccgcgtgtgcgagttccccttcagccccacccaggccacggcccccgccgtgccggttgc 392 ||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||| || Sbjct: 14936821 ccgggtgtgggagttccccttcagtcccacccacgccacggcccccgctgtcccggtcgc 14936762 Query: 393 cgacgccat 401 ||||||||| Sbjct: 14936761 cgacgccat 14936753
>dbj|AP006159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1157F01 Length = 181639 Score = 224 bits (113), Expect = 3e-55 Identities = 170/189 (89%) Strand = Plus / Minus Query: 213 gagggagtaggcgttgaggacgacgaggagaacgaggatgatggaggcgatgaggccgag 272 |||||||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |||| Sbjct: 77111 gagggagtaggcgttgaggaaggcgaggaggacgagaacgatggcggcgatgagggcgag 77052 Query: 273 gcaggtggcgctgccgatgtggcggcagaacttgtcgtagatgttgcagatcttgttcca 332 | |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 77051 gaaggtggagctgccgatgtggcggcagaacttgccgtagacgttgcatatcttgttcca 76992 Query: 333 ccgcgtgtgcgagttccccttcagccccacccaggccacggcccccgccgtgccggttgc 392 ||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||| || Sbjct: 76991 ccgggtgtgggagttccccttcagtcccacccacgccacggcccccgctgtcccggtcgc 76932 Query: 393 cgacgccat 401 ||||||||| Sbjct: 76931 cgacgccat 76923
>dbj|AK073296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029H14, full insert sequence Length = 948 Score = 224 bits (113), Expect = 3e-55 Identities = 170/189 (89%) Strand = Plus / Minus Query: 213 gagggagtaggcgttgaggacgacgaggagaacgaggatgatggaggcgatgaggccgag 272 |||||||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |||| Sbjct: 678 gagggagtaggcgttgaggaaggcgaggaggacgagaacgatggcggcgatgagggcgag 619 Query: 273 gcaggtggcgctgccgatgtggcggcagaacttgtcgtagatgttgcagatcttgttcca 332 | |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||| Sbjct: 618 gaaggtggagctgccgatgtggcggcagaacttgccgtagacgttgcatatcttgttcca 559 Query: 333 ccgcgtgtgcgagttccccttcagccccacccaggccacggcccccgccgtgccggttgc 392 ||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||| || Sbjct: 558 ccgggtgtgggagttccccttcagtcccacccacgccacggcccccgctgtcccggtcgc 499 Query: 393 cgacgccat 401 ||||||||| Sbjct: 498 cgacgccat 490
>ref|XM_954816.1| Neurospora crassa OR74A FREQUENCY CLOCK PROTEIN (NCU02265.1) partial mRNA Length = 2970 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 159 gccggaggagggagtggggctgga 182 |||||||||||||||||||||||| Sbjct: 2558 gccggaggagggagtggggctgga 2535
>ref|XM_331040.1| Neurospora crassa OR74A FREQUENCY CLOCK PROTEIN (NCU02265.1) partial mRNA Length = 2970 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 159 gccggaggagggagtggggctgga 182 |||||||||||||||||||||||| Sbjct: 2558 gccggaggagggagtggggctgga 2535
>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24 Length = 107482 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 159 gccggaggagggagtggggctgga 182 |||||||||||||||||||||||| Sbjct: 57177 gccggaggagggagtggggctgga 57154
>gb|U17073.1|NCU17073 Neurospora crassa frequency (frq) mRNA, complete cds Length = 4631 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 159 gccggaggagggagtggggctgga 182 |||||||||||||||||||||||| Sbjct: 3977 gccggaggagggagtggggctgga 3954
>ref|NM_111514.2| Arabidopsis thaliana unknown protein AT3G06390 mRNA, complete cds Length = 853 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 301 aacttgtcgtagatgttgcagatcttgttccacc 334 ||||||||||||| || |||||||||||||||| Sbjct: 575 aacttgtcgtagacattacagatcttgttccacc 542
>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence, complete sequence Length = 86022 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 301 aacttgtcgtagatgttgcagatcttgttccacc 334 ||||||||||||| || |||||||||||||||| Sbjct: 53286 aacttgtcgtagacattacagatcttgttccacc 53253
>emb|AJ011712.1|HSA011712 Homo sapiens TNNT1 gene, exons 1-11 (and joined CDS) Length = 16689 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 ggaggagggagtggggctggac 183 |||||||||||||||||||||| Sbjct: 14408 ggaggagggagtggggctggac 14429
>gb|AC010327.8| Homo sapiens chromosome 19 clone CTD-2587H24, complete sequence Length = 146664 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 ggaggagggagtggggctggac 183 |||||||||||||||||||||| Sbjct: 30827 ggaggagggagtggggctggac 30806
>gb|BT005725.1| Arabidopsis thaliana clone U20765 unknown protein (At3g06390) mRNA, complete cds Length = 631 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 301 aacttgtcgtagatgttgcagatcttgttccacc 334 ||||||||||||| || |||||||||||||||| Sbjct: 503 aacttgtcgtagacattacagatcttgttccacc 470
>gb|BT003953.1| Arabidopsis thaliana clone RAFL15-07-K13 (R20765) unknown protein (At3g06390) mRNA, complete cds Length = 868 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 301 aacttgtcgtagatgttgcagatcttgttccacc 334 ||||||||||||| || |||||||||||||||| Sbjct: 575 aacttgtcgtagacattacagatcttgttccacc 542
>ref|XM_419264.1| PREDICTED: Gallus gallus similar to Solute carrier family 26, member 8, isoform b (LOC421184), mRNA Length = 1596 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 424 aaaagaatgaggatgaagagc 444 ||||||||||||||||||||| Sbjct: 441 aaaagaatgaggatgaagagc 461
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 gaggacgacgaggagaacgag 248 ||||||||||||||||||||| Sbjct: 119180 gaggacgacgaggagaacgag 119200
>gb|AF283506.1| Catharanthus roseus MYC1 (myc1) mRNA, complete cds Length = 1433 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 583 ccgaatctgaacggcggcgtcagga 607 |||||||||||||||||||| |||| Sbjct: 366 ccgaatctgaacggcggcgtaagga 390
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 cgaatctgaacggcggcgtca 604 ||||||||||||||||||||| Sbjct: 2639793 cgaatctgaacggcggcgtca 2639773
>gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, complete sequence Length = 193245 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 cactccacagcccaggaccac 62 ||||||||||||||||||||| Sbjct: 102482 cactccacagcccaggaccac 102502
>gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence Length = 130460 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 gaggacgacgaggagaacgag 248 ||||||||||||||||||||| Sbjct: 53549 gaggacgacgaggagaacgag 53529
>gb|AY037858.1| Cercopithicine herpesvirus 15 strain LCL8664, complete genome Length = 171096 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 241 agaacgaggatgatggaggcgatga 265 |||| |||||||||||||||||||| Sbjct: 101505 agaatgaggatgatggaggcgatga 101481
>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete sequence Length = 36905 Score = 42.1 bits (21), Expect = 2.2 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 255 ggaggcgatgaggccgaggcaggtggcgctgcc 287 ||||||||||||| |||| |||||||||||||| Sbjct: 19475 ggaggcgatgaggtcgag-caggtggcgctgcc 19444
>ref|XM_466369.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1641 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 gagggagtaggcgttgaggacgacgagg 240 ||||||| ||||||||||||||||||| Sbjct: 370 gagggaggcggcgttgaggacgacgagg 343
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 541 taaatgagcgccggcgagtctttg 564 |||||||||||||||||| ||||| Sbjct: 1830539 taaatgagcgccggcgagactttg 1830562
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgcctggttcgatcagcggc 202 |||||||||||||||||||| Sbjct: 2863117 cgcctggttcgatcagcggc 2863136
>ref|XM_595523.2| PREDICTED: Bos taurus similar to chemokine (C-X3-C motif) ligand 1 (LOC517354), partial mRNA Length = 3005 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccttcagccccacccaggcc 369 |||||||||||||||||||| Sbjct: 2415 ccttcagccccacccaggcc 2396
>ref|XM_423563.1| PREDICTED: Gallus gallus similar to Solute carrier family 16 (monocarboxylic acid transporters), member 13 (LOC425860), partial mRNA Length = 1115 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cccacccaggccacggcccc 377 |||||||||||||||||||| Sbjct: 181 cccacccaggccacggcccc 162
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgcctggttcgatcagcggc 202 |||||||||||||||||||| Sbjct: 245183 cgcctggttcgatcagcggc 245164
>ref|NM_006312.2| Homo sapiens nuclear receptor co-repressor 2 (NCOR2), mRNA Length = 8854 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 6349 gaggccgaggcaggtggcgc 6330
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 ccggccccgccagccggaggaggg 170 ||||||||||||||||||| |||| Sbjct: 65442 ccggccccgccagccggagcaggg 65419
>emb|CR732029.2|CNS0GRS2 Tetraodon nigroviridis full-length cDNA Length = 1720 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccccttcagccccaccc 364 |||||||||||||||||||| Sbjct: 808 gttccccttcagccccaccc 827
>emb|CR726864.1|CNS0GNSM Tetraodon nigroviridis full-length cDNA Length = 1698 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccccttcagccccaccc 364 |||||||||||||||||||| Sbjct: 798 gttccccttcagccccaccc 817
>emb|CR725936.2|CNS0GN2U Tetraodon nigroviridis full-length cDNA Length = 1727 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccccttcagccccaccc 364 |||||||||||||||||||| Sbjct: 816 gttccccttcagccccaccc 835
>emb|CR697700.2|CNS0G1AO Tetraodon nigroviridis full-length cDNA Length = 1699 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccccttcagccccaccc 364 |||||||||||||||||||| Sbjct: 786 gttccccttcagccccaccc 805
>emb|CR688964.2|CNS0FUK0 Tetraodon nigroviridis full-length cDNA Length = 1410 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccccttcagccccaccc 364 |||||||||||||||||||| Sbjct: 622 gttccccttcagccccaccc 641
>emb|CR684556.1|CNS0FR5K Tetraodon nigroviridis full-length cDNA Length = 1705 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccccttcagccccaccc 364 |||||||||||||||||||| Sbjct: 795 gttccccttcagccccaccc 814
>gb|AC102441.6| Mus musculus chromosome 18, clone RP24-160I12, complete sequence Length = 224556 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaggagggagtggggctgga 182 |||||||||||||||||||| Sbjct: 104704 gaggagggagtggggctgga 104685
>gb|BC020427.1| Homo sapiens nuclear receptor co-repressor 2, mRNA (cDNA clone IMAGE:4179307) Length = 1362 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 1093 gaggccgaggcaggtggcgc 1074
>ref|XM_787362.1| PREDICTED: Strongylocentrotus purpuratus similar to 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin receptor 6) (LOC587648), mRNA Length = 879 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 234 gacgaggagaacgaggatgatgga 257 ||||||||||| |||||||||||| Sbjct: 150 gacgaggagaatgaggatgatgga 127
>ref|XM_776807.1| PREDICTED: Strongylocentrotus purpuratus similar to Myosin heavy chain, muscle (LOC576507), mRNA Length = 1092 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gagaacgaggatgatggagg 259 |||||||||||||||||||| Sbjct: 339 gagaacgaggatgatggagg 358
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgcctggttcgatcagcggc 202 |||||||||||||||||||| Sbjct: 22477 cgcctggttcgatcagcggc 22458
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 ctgggcggggaccggcccga 586 |||||||||||||||||||| Sbjct: 81569 ctgggcggggaccggcccga 81588
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tcgatcagcggcttctccgg 210 |||||||||||||||||||| Sbjct: 229143 tcgatcagcggcttctccgg 229124
>gb|AC104334.2| Homo sapiens chromosome 1 clone RP11-411H5, complete sequence Length = 129880 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 acagagccacaagaagataa 543 |||||||||||||||||||| Sbjct: 40946 acagagccacaagaagataa 40965
>gb|AC023747.4| Drosophila melanogaster X BAC RP98-38L1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167097 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ggacgacgaggagaacgagg 249 |||||||||||||||||||| Sbjct: 11077 ggacgacgaggagaacgagg 11096
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 cacaggatgccgagcttgac 471 |||||||||||||||||||| Sbjct: 3243260 cacaggatgccgagcttgac 3243241
>gb|AC023715.4| Drosophila melanogaster X BAC RP98-17H6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160629 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ggacgacgaggagaacgagg 249 |||||||||||||||||||| Sbjct: 21957 ggacgacgaggagaacgagg 21938
>ref|NM_131951.1| Drosophila melanogaster CG15473-RA (CG15473), mRNA Length = 2145 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ggacgacgaggagaacgagg 249 |||||||||||||||||||| Sbjct: 2103 ggacgacgaggagaacgagg 2122
>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence Length = 148301 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ccccacccaggccacggccc 376 |||||||||||||||||||| Sbjct: 95182 ccccacccaggccacggccc 95201
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 gatcgagctggcggccgtga 499 |||||||||||||||||||| Sbjct: 1382369 gatcgagctggcggccgtga 1382388
>gb|AC134749.4| Rattus norvegicus BAC CH230-353M13 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 153419 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 tgcacagagccacaagaaga 540 |||||||||||||||||||| Sbjct: 142769 tgcacagagccacaagaaga 142788
>gb|S83390.1| T3 receptor-associating cofactor-1 [human, fetal liver, mRNA, 2930 nt] Length = 2930 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 1405 gaggccgaggcaggtggcgc 1386
>gb|BC004326.1|BC004326 Homo sapiens, clone IMAGE:3629785, mRNA, partial cds Length = 2842 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 323 gaggccgaggcaggtggcgc 304
>gb|AC010616.5|AC010616 Homo sapiens chromosome 19 clone CTD-2575K13, complete sequence Length = 171849 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ggaggagggagtggggctgg 181 |||||||||||||||||||| Sbjct: 96203 ggaggagggagtggggctgg 96222
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ccccacccaggccacggccc 376 |||||||||||||||||||| Sbjct: 4948261 ccccacccaggccacggccc 4948280
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 213 gagggagtaggcgttgaggacgacgagg 240 ||||||| ||||||||||||||||||| Sbjct: 21979146 gagggaggcggcgttgaggacgacgagg 21979173
>ref|XM_392309.2| PREDICTED: Apis mellifera similar to CG11020-PB, isoform B (LOC408777), mRNA Length = 5136 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 gacgaggagaacgaggatga 253 |||||||||||||||||||| Sbjct: 5056 gacgaggagaacgaggatga 5075
>gb|AC073916.41| Homo sapiens 12 BAC RP11-408I18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205283 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 52080 gaggccgaggcaggtggcgc 52099
>ref|NM_001011629.1| Apis mellifera putative transcription factor mblk-1 (Mblk-1), mRNA Length = 14440 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gacgacgaggagaacgagga 250 |||||||||||||||||||| Sbjct: 1091 gacgacgaggagaacgagga 1110
>gb|AY965853.1| Homo sapiens SMRTE-tau mRNA, complete cds, alternatively spliced Length = 8548 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 6182 gaggccgaggcaggtggcgc 6163
>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 150001 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 ccacaagaagataaatgagc 549 |||||||||||||||||||| Sbjct: 92276 ccacaagaagataaatgagc 92257
>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23 Length = 100041 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 213 gagggagtaggcgttgaggacgacgagg 240 ||||||| ||||||||||||||||||| Sbjct: 27768 gagggaggcggcgttgaggacgacgagg 27795
>ref|XM_312324.2| Anopheles gambiae str. PEST ENSANGP00000010611 (ENSANGG00000008122), partial mRNA Length = 2526 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 tgaggacgacgaggagaacgagga 250 |||||||||||||||| ||||||| Sbjct: 1704 tgaggacgacgaggaggacgagga 1727
>dbj|AK071320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088A12, full insert sequence Length = 1641 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 gagggagtaggcgttgaggacgacgagg 240 ||||||| ||||||||||||||||||| Sbjct: 370 gagggaggcggcgttgaggacgacgagg 343
>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence Length = 45702 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 tgaggacgacgaggagaacgagga 250 |||||||||||||||| ||||||| Sbjct: 26293 tgaggacgacgaggaggacgagga 26270
>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory pathway protein D (gspD), general secretory pathway protein E (gspE), general secretory pathway protein F (gspF), GspC (gspC), general secretory pathway protein G (gspG), general secretory pathway protein H (gspH), general secretory pathway protein I (gspI), general secretory pathway protein J (gspJ), general secretory pathway protein K (gspK), general secretory pathway protein L (gspL), general secretory pathway protein M (gspM), and general secretory pathway protein N (gspN) genes, complete cds; and unknown genes Length = 20302 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgcctggttcgatcagcggc 202 |||||||||||||||||||| Sbjct: 17602 cgcctggttcgatcagcggc 17583
>gb|AF125672.1|AF125672 Homo sapiens silencing mediator of retinoic acid and thyroid hormone receptor extended isoform (SMRTE) mRNA, complete cds Length = 8686 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 6182 gaggccgaggcaggtggcgc 6163
>gb|AF113003.1|AF113003 Homo sapiens silencing mediator of retinoic acid and thyroid hormone receptor alpha mRNA, complete cds Length = 8561 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 6057 gaggccgaggcaggtggcgc 6038
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ggacgacgaggagaacgagg 249 |||||||||||||||||||| Sbjct: 262622 ggacgacgaggagaacgagg 262603
>gb|AC005795.1|AC005795 Homo sapiens chromosome 19, cosmid F20649, complete sequence Length = 44399 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 aaaagaatgaggatgaagag 443 |||||||||||||||||||| Sbjct: 16319 aaaagaatgaggatgaagag 16338
>gb|U37146.1|HSU37146 Human silencing mediator of retinoid and thyroid hormone action (SMRT) mRNA, complete cds Length = 5989 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaggccgaggcaggtggcgc 283 |||||||||||||||||||| Sbjct: 3485 gaggccgaggcaggtggcgc 3466
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ccccacccaggccacggccc 376 |||||||||||||||||||| Sbjct: 4949048 ccccacccaggccacggccc 4949067
>dbj|AB047034.1| Apis mellifera mblk-1 mRNA, complete cds Length = 14440 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gacgacgaggagaacgagga 250 |||||||||||||||||||| Sbjct: 1091 gacgacgaggagaacgagga 1110
>dbj|AP001017.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-712C7, complete sequences Length = 131000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gatgaggccgaggcaggtgg 280 |||||||||||||||||||| Sbjct: 62051 gatgaggccgaggcaggtgg 62070 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,989,055 Number of Sequences: 3902068 Number of extensions: 4989055 Number of successful extensions: 193239 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 192543 Number of HSP's gapped (non-prelim): 696 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
