ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11j02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550387.1| Oryza sativa (japonica cultivar-group), mRNA 309 5e-81
2dbj|AK063507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 5e-81
3gb|AY110368.1| Zea mays CL34920_1 mRNA sequence 287 2e-74
4gb|BT017084.1| Zea mays clone EL01N0360E11.c mRNA sequence 280 5e-72
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
6dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
7ref|NM_128125.2| Arabidopsis thaliana EMB2410 AT2G25660 (EMB2410... 100 9e-18
8gb|AC006053.3| Arabidopsis thaliana chromosome 2 clone F3N11 map... 70 8e-09
9gb|AY027935.1| Haemophilus influenzae phage HP2, complete genome 46 0.12
10gb|U24159.1|BHU24159 Bacteriophage HP1 strain HP1c1, complete ge... 46 0.12
11gb|AC122279.3| Mus musculus BAC clone RP23-237J8 from chromosome... 42 1.9
12gb|AE014179.1| Mus musculus piebald deletion region section 7 of... 42 1.9
13dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 42 1.9
14gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, comple... 42 1.9
15ref|NM_001031071.1| Gallus gallus G protein-coupled receptor 126... 40 7.4
16gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, comp... 40 7.4
17ref|XM_413763.1| PREDICTED: Gallus gallus similar to RAR-related... 40 7.4
18gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complet... 40 7.4
19ref|XM_662111.1| Cryptosporidium hominis TU502 hypothetical prot... 40 7.4
20emb|Z93241.11|HS222E13 Human DNA sequence from clone RP1-222E13 ... 40 7.4
21emb|AL627303.17| Human DNA sequence from clone RP11-770B5 on chr... 40 7.4
22emb|AL592076.4| Human DNA sequence from clone RP11-306K13 on chr... 40 7.4
23emb|AL157695.14| Human DNA sequence from clone RP11-42I11 on chr... 40 7.4
24ref|NM_001031421.1| Gallus gallus similar to family with sequenc... 40 7.4
25gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, com... 40 7.4
26emb|AJ851754.1| Gallus gallus mRNA for hypothetical protein, clo... 40 7.4
27emb|AJ720011.1| Gallus gallus mRNA for hypothetical protein, clo... 40 7.4
28emb|CR352325.4| Mouse DNA sequence from clone RP23-333J5 on chro... 40 7.4
29emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 ... 40 7.4
30gb|AC093664.4| Homo sapiens BAC clone RP11-480G3 from 4, complet... 40 7.4
31gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromoso... 40 7.4
32ref|XM_627868.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.4
33ref|NG_002405.1| Homo sapiens RNA, U12 small nuclear pseudogene ... 40 7.4
34gb|AC009303.3| Homo sapiens BAC clone RP11-98C1 from 2, complete... 40 7.4
35emb|BX647805.1|HSM807951 Homo sapiens mRNA; cDNA DKFZp781K1743 (... 40 7.4
36emb|AL592404.7| Mouse DNA sequence from clone RP23-425D20 on chr... 40 7.4
37emb|CR974439.10| Mouse DNA sequence from clone RP23-298C24 on ch... 40 7.4
38gb|L43846.1|HUMUGB Homo sapiens small nuclear RNA (snRNA) gene 40 7.4
39emb|AL136158.25| Mouse DNA sequence from clone RP21-538M10 on ch... 40 7.4 
>ref|XM_550387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3389

 Score =  309 bits (156), Expect = 5e-81
 Identities = 260/295 (88%)
 Strand = Plus / Minus

                                                                        
Query: 249  atcaatcctgcgacgttgccgagtactcaaagagaagccgattggacggtgtggattgga 308
            ||||| |||| || ||||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct: 3091 atcaaccctgggatgttgcagagtactcgaagagaagtcgattggacggcgtagattgga 3032

                                                                        
Query: 309  agatgacacggagcctactggttagctggtatatcaacgaccactgcatcgccatttctg 368
            |||  ||||||||||| ||||||||||| ||||| |  ||||||||||| ||||||||||
Sbjct: 3031 agagaacacggagcctgctggttagctgatatatgagtgaccactgcattgccatttctg 2972

                                                                        
Query: 369  aatctttcatttgcctcacaacagaggcctgaacacgttttccaagctgcacttcaacct 428
            |||||||||| ||||| ||||||||||||||||  ||||||||||| |||||||| ||||
Sbjct: 2971 aatctttcatctgcctgacaacagaggcctgaaggcgttttccaagttgcacttcgacct 2912

                                                                        
Query: 429  ccgtagcaaaagagatattgtttgccagcgatttgagtggatcaaccgttggatctacgg 488
            | ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 2911 cagtagcaaaagatatattgtttgccagcgatttaagtgggtcaaccgttggatctacag 2852

                                                                   
Query: 489  acaacaaactnggaatctgcggagcataaaccatccgccaccgtgcttgtccaaa 543
            | |  ||||| ||||||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 2851 atagtaaactcggaatctgcggtgcataaaccagtcgccaccgtgcttgaccaaa 2797



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 55   ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 102
            ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 3306 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 3259
to top
>dbj|AK063507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F07, full
            insert sequence
          Length = 3389

 Score =  309 bits (156), Expect = 5e-81
 Identities = 260/295 (88%)
 Strand = Plus / Minus

                                                                        
Query: 249  atcaatcctgcgacgttgccgagtactcaaagagaagccgattggacggtgtggattgga 308
            ||||| |||| || ||||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct: 3091 atcaaccctgggatgttgcagagtactcgaagagaagtcgattggacggcgtagattgga 3032

                                                                        
Query: 309  agatgacacggagcctactggttagctggtatatcaacgaccactgcatcgccatttctg 368
            |||  ||||||||||| ||||||||||| ||||| |  ||||||||||| ||||||||||
Sbjct: 3031 agagaacacggagcctgctggttagctgatatatgagtgaccactgcattgccatttctg 2972

                                                                        
Query: 369  aatctttcatttgcctcacaacagaggcctgaacacgttttccaagctgcacttcaacct 428
            |||||||||| ||||| ||||||||||||||||  ||||||||||| |||||||| ||||
Sbjct: 2971 aatctttcatctgcctgacaacagaggcctgaaggcgttttccaagttgcacttcgacct 2912

                                                                        
Query: 429  ccgtagcaaaagagatattgtttgccagcgatttgagtggatcaaccgttggatctacgg 488
            | ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 2911 cagtagcaaaagatatattgtttgccagcgatttaagtgggtcaaccgttggatctacag 2852

                                                                   
Query: 489  acaacaaactnggaatctgcggagcataaaccatccgccaccgtgcttgtccaaa 543
            | |  ||||| ||||||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 2851 atagtaaactcggaatctgcggtgcataaaccagtcgccaccgtgcttgaccaaa 2797



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 55   ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 102
            ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 3306 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 3259
to top
>gb|AY110368.1| Zea mays CL34920_1 mRNA sequence
          Length = 820

 Score =  287 bits (145), Expect = 2e-74
 Identities = 258/296 (87%)
 Strand = Plus / Minus

                                                                       
Query: 249 atcaatcctgcgacgttgccgagtactcaaagagaagccgattggacggtgtggattgga 308
           |||| ||||| || ||||| || ||||| |||||||||| |||||| || || || ||||
Sbjct: 563 atcattcctgtgatgttgctgaatactcgaagagaagcctattggatggagtagactgga 504

                                                                       
Query: 309 agatgacacggagcctactggttagctggtatatcaacgaccactgcatcgccatttctg 368
           |||  ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 503 agagaacacggagcctactggttagctgatatatcagcgtccactgcatcgccatttctg 444

                                                                       
Query: 369 aatctttcatttgcctcacaacagaggcctgaacacgttttccaagctgcacttcaacct 428
           |||||||||||||||| || |||||||||||||  |||||||| ||||||||||| ||||
Sbjct: 443 aatctttcatttgcctgacgacagaggcctgaaggcgttttccgagctgcacttcgacct 384

                                                                       
Query: 429 ccgtagcaaaagagatattgtttgccagcgatttgagtggatcaaccgttggatctacgg 488
           |||| ||||||||||||||||||||||| ||||| || |||||||| |||||||| || |
Sbjct: 383 ccgtggcaaaagagatattgtttgccagagattttagcggatcaactgttggatccacag 324

                                                                   
Query: 489 acaacaaactnggaatctgcggagcataaaccatccgccaccgtgcttgtccaaac 544
           | |  ||||| || |||||||||||||||||||  ||||||||||| || ||||||
Sbjct: 323 agagtaaacttgggatctgcggagcataaaccagtcgccaccgtgcctggccaaac 268



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 73  ctcagaaactttgtttccgaga 94
           ||||||||||||||||||||||
Sbjct: 733 ctcagaaactttgtttccgaga 712
to top
>gb|BT017084.1| Zea mays clone EL01N0360E11.c mRNA sequence
          Length = 1083

 Score =  280 bits (141), Expect = 5e-72
 Identities = 258/296 (87%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 249 atcaatcctgcgacgttgccgagtactcaaagagaagccgattggacggtgtggattgga 308
           |||| ||||| || ||||| || ||||| |||||||||| |||||| || || || ||||
Sbjct: 824 atcattcctgtgatgttgctgaatactcgaagagaagcctattggatggagtagactgga 765

                                                                       
Query: 309 agatgacacggagcctactggttagctggtatatcaacgaccactgcatcgccatttctg 368
           |||  ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 764 agagaacacggagcctactggttagctgatatatcagcgtccactgcatcgccatttctg 705

                                                                       
Query: 369 aatctttcatttgcctcacaacagaggcctgaacacgttttccaagctgcacttcaacct 428
           |||||||||||||||| || |||||||||||||  |||||||| ||||||||||| ||||
Sbjct: 704 aatctttcatttgcctgacgacagaggcctgaaggcgttttccgagctgcacttcgacct 645

                                                                       
Query: 429 ccgtagcaaaagagatattgtttgccagcgatttgagtggatcaaccgttggatctacgg 488
           |||| ||||||||||||||||||||||| ||||| || |||||||| |||||||| || |
Sbjct: 644 ccgtggcaaaagagatattgtttgccagagattttagcggatcaactgttggatccacag 585

                                                                   
Query: 489 acaacaaactnggaatctgcggagcataaaccatccgccaccgtgcttgtccaaac 544
           | |  ||||| || ||||||||||||| |||||  ||||||||||| |||||||||
Sbjct: 584 agagtaaacttgggatctgcggagcat-aaccagtcgccaccgtgcctgtccaaac 530



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 73  ctcagaaactttgtttccgaga 94
           ||||||||||||||||||||||
Sbjct: 997 ctcagaaactttgtttccgaga 976
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  161 bits (81), Expect = 3e-36
 Identities = 125/140 (89%)
 Strand = Plus / Minus

                                                                           
Query: 404     cgttttccaagctgcacttcaacctccgtagcaaaagagatattgtttgccagcgatttg 463
               ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| 
Sbjct: 4139073 cgttttccaagttgcacttcgacctcagtagcaaaagatatattgtttgccagcgattta 4139014

                                                                           
Query: 464     agtggatcaaccgttggatctacggacaacaaactnggaatctgcggagcataaaccatc 523
               ||||| ||||||||||||||||| || |  ||||| ||||||||||| ||||||||||  
Sbjct: 4139013 agtgggtcaaccgttggatctacagatagtaaactcggaatctgcggtgcataaaccagt 4138954

                                   
Query: 524     cgccaccgtgcttgtccaaa 543
               |||||||||||||| |||||
Sbjct: 4138953 cgccaccgtgcttgaccaaa 4138934



 Score =  157 bits (79), Expect = 5e-35
 Identities = 133/151 (88%)
 Strand = Plus / Minus

                                                                           
Query: 249     atcaatcctgcgacgttgccgagtactcaaagagaagccgattggacggtgtggattgga 308
               ||||| |||| || ||||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct: 4139333 atcaaccctgggatgttgcagagtactcgaagagaagtcgattggacggcgtagattgga 4139274

                                                                           
Query: 309     agatgacacggagcctactggttagctggtatatcaacgaccactgcatcgccatttctg 368
               |||  ||||||||||| ||||||||||| ||||| |  ||||||||||| ||||||||||
Sbjct: 4139273 agagaacacggagcctgctggttagctgatatatgagtgaccactgcattgccatttctg 4139214

                                              
Query: 369     aatctttcatttgcctcacaacagaggcctg 399
               |||||||||| ||||| ||||||||||||||
Sbjct: 4139213 aatctttcatctgcctgacaacagaggcctg 4139183



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                               
Query: 55      ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 102
               ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 4139548 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 4139501
to top
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score =  161 bits (81), Expect = 3e-36
 Identities = 125/140 (89%)
 Strand = Plus / Minus

                                                                         
Query: 404   cgttttccaagctgcacttcaacctccgtagcaaaagagatattgtttgccagcgatttg 463
             ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| 
Sbjct: 86044 cgttttccaagttgcacttcgacctcagtagcaaaagatatattgtttgccagcgattta 85985

                                                                         
Query: 464   agtggatcaaccgttggatctacggacaacaaactnggaatctgcggagcataaaccatc 523
             ||||| ||||||||||||||||| || |  ||||| ||||||||||| ||||||||||  
Sbjct: 85984 agtgggtcaaccgttggatctacagatagtaaactcggaatctgcggtgcataaaccagt 85925

                                 
Query: 524   cgccaccgtgcttgtccaaa 543
             |||||||||||||| |||||
Sbjct: 85924 cgccaccgtgcttgaccaaa 85905



 Score =  157 bits (79), Expect = 5e-35
 Identities = 133/151 (88%)
 Strand = Plus / Minus

                                                                         
Query: 249   atcaatcctgcgacgttgccgagtactcaaagagaagccgattggacggtgtggattgga 308
             ||||| |||| || ||||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct: 86304 atcaaccctgggatgttgcagagtactcgaagagaagtcgattggacggcgtagattgga 86245

                                                                         
Query: 309   agatgacacggagcctactggttagctggtatatcaacgaccactgcatcgccatttctg 368
             |||  ||||||||||| ||||||||||| ||||| |  ||||||||||| ||||||||||
Sbjct: 86244 agagaacacggagcctgctggttagctgatatatgagtgaccactgcattgccatttctg 86185

                                            
Query: 369   aatctttcatttgcctcacaacagaggcctg 399
             |||||||||| ||||| ||||||||||||||
Sbjct: 86184 aatctttcatctgcctgacaacagaggcctg 86154



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 55    ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 102
             ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 86519 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 86472
to top
>ref|NM_128125.2| Arabidopsis thaliana EMB2410 AT2G25660 (EMB2410) mRNA, complete cds
          Length = 6694

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                        
Query: 353  tgcatcgccatttctgaatctttcatttgcctcacaacagaggcctgaacacgttttcca 412
            ||||| ||||| || ||||||||||| || || || ||||||||||||| ||||||||| 
Sbjct: 6338 tgcattgccatctcagaatctttcatctgtcttaccacagaggcctgaagacgttttccg 6279

                                                                        
Query: 413  agctgcacttcaacctccgtagcaaaagagatattgtttgccagcgatttgagtggatca 472
            |||||||||||||| |||||  |||| || || ||| | ||||| || ||||| ||||| 
Sbjct: 6278 agctgcacttcaacttccgttccaaatgatatgttgctcgccagagacttgagaggatcc 6219

                                                             
Query: 473  accgttggatctacggacaacaaactnggaatctgcggagcataaacca 521
            || |||||||| || || |  ||||| || |||||||||||||| ||||
Sbjct: 6218 acagttggatcaacagagagtaaacttgggatctgcggagcatacacca 6170
to top
>gb|AC006053.3| Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete
             sequence
          Length = 100745

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 103/126 (81%)
 Strand = Plus / Plus

                                                                         
Query: 396   cctgaacacgttttccaagctgcacttcaacctccgtagcaaaagagatattgtttgcca 455
             |||||| ||||||||| |||||||||||||| |||||  |||| || || ||| | ||||
Sbjct: 33672 cctgaagacgttttccgagctgcacttcaacttccgttccaaatgatatgttgctcgcca 33731

                                                                         
Query: 456   gcgatttgagtggatcaaccgttggatctacggacaacaaactnggaatctgcggagcat 515
             | || ||||| ||||| || |||||||| || || |  ||||| || |||||||||||||
Sbjct: 33732 gagacttgagaggatccacagttggatcaacagagagtaaacttgggatctgcggagcat 33791

                   
Query: 516   aaacca 521
             | ||||
Sbjct: 33792 acacca 33797
to top
>gb|AY027935.1| Haemophilus influenzae phage HP2, complete genome
          Length = 31508

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 142   ttgccaatacttgctttatctac 164
             |||||||||||||||||||||||
Sbjct: 17681 ttgccaatacttgctttatctac 17659
to top
>gb|U24159.1|BHU24159 Bacteriophage HP1 strain HP1c1, complete genome
          Length = 32355

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 142   ttgccaatacttgctttatctac 164
             |||||||||||||||||||||||
Sbjct: 18553 ttgccaatacttgctttatctac 18531
to top
>gb|AC122279.3| Mus musculus BAC clone RP23-237J8 from chromosome 14, complete sequence
          Length = 203640

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    tacagaaacaaatgttagggg 182
              |||||||||||||||||||||
Sbjct: 189288 tacagaaacaaatgttagggg 189268
to top
>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete
              sequence
          Length = 400029

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 162    tacagaaacaaatgttagggg 182
              |||||||||||||||||||||
Sbjct: 354016 tacagaaacaaatgttagggg 354036
to top
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      acatatgtacatcctcagaaa 80
               |||||||||||||||||||||
Sbjct: 3152375 acatatgtacatcctcagaaa 3152395
to top
>gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, complete sequence
          Length = 172271

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   tacagaaacaaatgttagggg 182
             |||||||||||||||||||||
Sbjct: 74934 tacagaaacaaatgttagggg 74954
to top
>ref|NM_001031071.1| Gallus gallus G protein-coupled receptor 126 (GPR126), mRNA
          Length = 3984

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  ctgtgcaatgaaagaaaatg 239
            ||||||||||||||||||||
Sbjct: 3526 ctgtgcaatgaaagaaaatg 3545
to top
>gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, complete sequence
          Length = 205550

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   ccatttctgaatctttcatt 379
             ||||||||||||||||||||
Sbjct: 19313 ccatttctgaatctttcatt 19332
to top
>ref|XM_413763.1| PREDICTED: Gallus gallus similar to RAR-related orphan receptor A
            isoform b; RAR-related orphan receptor alpha; retinoic
            acid receptor-related orphan receptor alpha;
            transcription factor RZR-alpha; ROR-alpha (LOC415377),
            mRNA
          Length = 2799

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  tagcaaaagagatattgttt 451
            ||||||||||||||||||||
Sbjct: 2571 tagcaaaagagatattgttt 2590
to top
>gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complete sequence
          Length = 188207

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    ctttatctacagaaacaaat 174
              ||||||||||||||||||||
Sbjct: 152407 ctttatctacagaaacaaat 152426
to top
>ref|XM_662111.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10014)
            partial mRNA
          Length = 2871

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 363  tttctgaatctttcatttgc 382
            ||||||||||||||||||||
Sbjct: 2753 tttctgaatctttcatttgc 2734
to top
>emb|Z93241.11|HS222E13 Human DNA sequence from clone RP1-222E13 on chromosome 22, complete
             sequence
          Length = 123360

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ctaccaacaagaaacaaaaa 126
             ||||||||||||||||||||
Sbjct: 76856 ctaccaacaagaaacaaaaa 76837
to top
>emb|AL627303.17| Human DNA sequence from clone RP11-770B5 on chromosome 9 Contains
            part of the PBX3 gene for pre-B-cell leukemia
            transcription factor 3, complete sequence
          Length = 70193

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 147  aatacttgctttatctacagaaac 170
            |||||||||||||| |||||||||
Sbjct: 9440 aatacttgctttatatacagaaac 9417
to top
>emb|AL592076.4| Human DNA sequence from clone RP11-306K13 on chromosome 1 Contains a
             ribosomal protein L36 (RPL36) pseudogene, complete
             sequence
          Length = 100592

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    gagagaaagaatatagctac 110
             ||||||||||||||||||||
Sbjct: 55494 gagagaaagaatatagctac 55475
to top
>emb|AL157695.14| Human DNA sequence from clone RP11-42I11 on chromosome 13, complete
             sequence
          Length = 65252

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   ccaagctgcacttcaacctc 429
             ||||||||||||||||||||
Sbjct: 63289 ccaagctgcacttcaacctc 63308
to top
>ref|NM_001031421.1| Gallus gallus similar to family with sequence similarity 29, member
           A (LOC427238), mRNA
          Length = 4770

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 365 tctgaatctttcatttgcctcaca 388
           |||| |||||||||||||||||||
Sbjct: 593 tctgcatctttcatttgcctcaca 570
to top
>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence
          Length = 246033

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    tagctaccaacaagaaacaaaaac 127
              |||||||||| |||||||||||||
Sbjct: 106966 tagctaccaaaaagaaacaaaaac 106989
to top
>emb|AJ851754.1| Gallus gallus mRNA for hypothetical protein, clone 27d12
          Length = 3984

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  ctgtgcaatgaaagaaaatg 239
            ||||||||||||||||||||
Sbjct: 3526 ctgtgcaatgaaagaaaatg 3545
to top
>emb|AJ720011.1| Gallus gallus mRNA for hypothetical protein, clone 9g9
          Length = 4770

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 365 tctgaatctttcatttgcctcaca 388
           |||| |||||||||||||||||||
Sbjct: 593 tctgcatctttcatttgcctcaca 570
to top
>emb|CR352325.4| Mouse DNA sequence from clone RP23-333J5 on chromosome 4 Contains the
             5' end of the Mpdz gene for multiple PDZ domain protein,
             complete sequence
          Length = 113675

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tgtgcaatgaaagaaaatgg 240
             ||||||||||||||||||||
Sbjct: 38206 tgtgcaatgaaagaaaatgg 38225
to top
>emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 in linkage group 16,
             complete sequence
          Length = 196058

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    tacgggtgtaaatttacatctgac 35
             ||||||||||||| ||||||||||
Sbjct: 25128 tacgggtgtaaatgtacatctgac 25105
to top
>gb|AC093664.4| Homo sapiens BAC clone RP11-480G3 from 4, complete sequence
          Length = 79539

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   tttgcctcacaacagaggcc 397
             ||||||||||||||||||||
Sbjct: 28773 tttgcctcacaacagaggcc 28754
to top
>gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromosome 7, complete sequence
          Length = 196528

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    ctttatctacagaaacaaat 174
              ||||||||||||||||||||
Sbjct: 164644 ctttatctacagaaacaaat 164663
to top
>ref|XM_627868.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_50),
            partial mRNA
          Length = 2871

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 363  tttctgaatctttcatttgc 382
            ||||||||||||||||||||
Sbjct: 2753 tttctgaatctttcatttgc 2734
to top
>ref|NG_002405.1| Homo sapiens RNA, U12 small nuclear pseudogene (RNU12P) on
           chromosome 22
          Length = 731

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 ctaccaacaagaaacaaaaa 126
           ||||||||||||||||||||
Sbjct: 546 ctaccaacaagaaacaaaaa 527
to top
>gb|AC009303.3| Homo sapiens BAC clone RP11-98C1 from 2, complete sequence
          Length = 198652

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    caatgaaagaaaatgggaaa 244
              ||||||||||||||||||||
Sbjct: 180380 caatgaaagaaaatgggaaa 180399
to top
>emb|BX647805.1|HSM807951 Homo sapiens mRNA; cDNA DKFZp781K1743 (from clone DKFZp781K1743)
          Length = 3169

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  caatgaaagaaaatgggaaa 244
            ||||||||||||||||||||
Sbjct: 2847 caatgaaagaaaatgggaaa 2866
to top
>emb|AL592404.7| Mouse DNA sequence from clone RP23-425D20 on chromosome 4, complete
             sequence
          Length = 110309

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tgtgcaatgaaagaaaatgg 240
             ||||||||||||||||||||
Sbjct: 34841 tgtgcaatgaaagaaaatgg 34860
to top
>emb|CR974439.10| Mouse DNA sequence from clone RP23-298C24 on chromosome 17, complete
             sequence
          Length = 235536

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   tctgtgcaatgaaagaaaat 238
             ||||||||||||||||||||
Sbjct: 79010 tctgtgcaatgaaagaaaat 78991
to top
>gb|L43846.1|HUMUGB Homo sapiens small nuclear RNA (snRNA) gene
          Length = 731

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 ctaccaacaagaaacaaaaa 126
           ||||||||||||||||||||
Sbjct: 546 ctaccaacaagaaacaaaaa 527
to top
>emb|AL136158.25| Mouse DNA sequence from clone RP21-538M10 on chromosome 17, complete
              sequence
          Length = 190737

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    tctgtgcaatgaaagaaaat 238
              ||||||||||||||||||||
Sbjct: 127523 tctgtgcaatgaaagaaaat 127542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,909,204
Number of Sequences: 3902068
Number of extensions: 4909204
Number of successful extensions: 94200
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94088
Number of HSP's gapped (non-prelim): 111
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top