Clone Name | rbasd11i23 |
---|---|
Clone Library Name | barley_pub |
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT 1-94| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 145 bits (367), Expect = 8e-35 Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 3/216 (1%) Frame = +1 Query: 1 STVGALQY-LTLTRPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRSP 177 S VG+L Y + TRPD++ AV V ++L P H EAVK IL +++GT L S Sbjct: 1113 SAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS- 1171 Query: 178 STLISIYTNADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGT 357 ++ YT+AD AG ID+R+S+ G+ F ISW ++ Q V+ S+TEAEY A Sbjct: 1172 DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETG 1231 Query: 358 AEATWLQSLLRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMK 537 E WL+ L+ELG+ Q + V++CD+ A L+ N ++HARTKHI+V +H++RE V + Sbjct: 1232 KEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290 Query: 538 ALKVRFISSADQVADAFTK--PLTKLMLARLRSNLH 639 +LKV IS+ + AD TK P K L + +H Sbjct: 1291 SLKVLKISTNENPADMLTKVVPRNKFELCKELVGMH 1326
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810 (ORF240b)| Length = 240 Score = 144 bits (362), Expect = 3e-34 Identities = 69/124 (55%), Positives = 88/124 (70%) Frame = +1 Query: 1 STVGALQYLTLTRPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRSPS 180 S VGALQYLTLTRPD+S+AVN VCQ + PT + +K +L +VKGT+ GL + ++ Sbjct: 102 SIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK 161 Query: 181 TLISIYTNADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTA 360 + + ++DWAGC RRST GF F G N+ISWSA++QPTVSRSSTE EY+ALA A Sbjct: 162 LNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAA 221 Query: 361 EATW 372 E TW Sbjct: 222 ELTW 225
>COPIA_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains: Copia VLP| protein; Copia protease (EC 3.4.23.-)] Length = 1409 Score = 142 bits (359), Expect = 7e-34 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 4/216 (1%) Frame = +1 Query: 1 STVGALQYLTL-TRPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRSP 177 S +G L Y+ L TRPDL+ AVN + +Y S+ + +K +L ++KGT+ L +++ Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242 Query: 178 STLISI--YTNADWAGCIDDRRSTGGFAV-FFGPNLISWSARKQPTVSRSSTEAEYKALA 348 + I Y ++DWAG DR+ST G+ F NLI W+ ++Q +V+ SSTEAEY AL Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALF 1302 Query: 349 NGTAEATWLQSLLRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKV 528 EA WL+ LL + + ++ DN G + NP H R KHI++ +HF RE+V Sbjct: 1303 EAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQV 1362 Query: 529 AMKALKVRFISSADQVADAFTKPLTKLMLARLRSNL 636 + + +I + +Q+AD FTKPL LR L Sbjct: 1363 QNNVICLEYIPTENQLADIFTKPLPAARFVELRDKL 1398
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240 (ORF111a)| Length = 111 Score = 74.7 bits (182), Expect = 2e-13 Identities = 35/77 (45%), Positives = 48/77 (62%) Frame = +1 Query: 22 YLTLTRPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRSPSTLISIYT 201 YLT+TRPDL+FAVN++ Q+ S +AV +LH+VKGTV GL + + + Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61 Query: 202 NADWAGCIDDRRSTGGF 252 ++DWA C D RRS GF Sbjct: 62 DSDWASCPDTRRSVTGF 78
>YCH4_YEAST (P25600) Hypothetical transposon Ty5-1 protein YCL074W| Length = 308 Score = 59.3 bits (142), Expect = 1e-08 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Frame = +1 Query: 1 STVGALQYLTLT-RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRSP 177 S VG L + T RPD+S+ V+ + ++L P +H E+ + +L ++ T S L R Sbjct: 185 SIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGS 244 Query: 178 STLISIYTNADWAGCIDDRRSTGGFAVFFGPNLISWSARK-QPTVSRSSTEAEY 336 +++Y +A D STGG+ ++WS++K + + STEAEY Sbjct: 245 QLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEY 298
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein| Length = 1803 Score = 58.2 bits (139), Expect = 2e-08 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 2/201 (0%) Frame = +1 Query: 7 VGALQYLT-LTRPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRSPST 183 +G L Y+ R D+ FAV KV + ++ P + + I+ ++ G+ R + Sbjct: 1577 LGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNK 1636 Query: 184 LISIYTNADWA-GCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTA 360 + D + G D +S G +++G N+ + + K SSTEAE A+ G A Sbjct: 1637 DKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYA 1696 Query: 361 EATWLQSLLRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKA 540 ++ L+ L+ELG V+ D+ A + K + ++EK+ K+ Sbjct: 1697 DSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKS 1756 Query: 541 LKVRFISSADQVADAFTKPLT 603 +K+ I+ +AD TKP++ Sbjct: 1757 IKLLKITGKGNIADLLTKPVS 1777
>YMU0_YEAST (Q04670) Transposon Ty1 protein B| Length = 1328 Score = 39.3 bits (90), Expect = 0.011 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L +S P+ + + ++ Sbjct: 1124 RFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISD 1183 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1184 ASYGNQPYYKSQIGNIYLLNG-KVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHL 1242 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + +N R + +R++V+ L V +I + Sbjct: 1243 VQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIET 1302 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1303 KKNIADVMTKPL 1314
>YMT5_YEAST (Q04214) Transposon Ty1 protein B| Length = 1328 Score = 38.9 bits (89), Expect = 0.014 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L +S P+ + + ++ Sbjct: 1124 RFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISD 1183 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1184 ASYGNQPYYKSQIGNIYLLNG-KVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYL 1242 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + +N R + +R++V+ L V +I + Sbjct: 1243 IQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIET 1302 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1303 KKNIADVMTKPL 1314
>YJZ9_YEAST (P47100) Transposon Ty1 protein B| Length = 1755 Score = 38.9 bits (89), Expect = 0.014 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L +S P+ + + ++ Sbjct: 1551 RFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISD 1610 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1611 ASYGNQPYYKSQIGNIYLLNG-KVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYL 1669 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + +N R + +R++V+ L V +I + Sbjct: 1670 IQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIET 1729 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1730 KKNIADVMTKPL 1741
>YME4_YEAST (Q04711) Transposon Ty1 protein B| Length = 1328 Score = 34.7 bits (78), Expect = 0.26 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L ++ P + ++ Sbjct: 1124 RFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISD 1183 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1184 ASYGNQPYYKSQIGNIYLLNG-KVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHL 1242 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + +N R + +R++V+ L V +I + Sbjct: 1243 VQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIET 1302 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1303 KKNIADVMTKPL 1314
>CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydrolase)| Length = 210 Score = 32.7 bits (73), Expect = 0.99 Identities = 28/82 (34%), Positives = 36/82 (43%) Frame = -1 Query: 515 TKWKSTSMCLVRA*NTGLAVR*VAPRLSHQRTGARG*HTPSSLNKDCNHVASAVPFARAL 336 TKW +CL+ GLAVR + S +G SS +H S VP A+ Sbjct: 86 TKWNLFIICLLLLCLPGLAVRYMHDMFSPCISGVAN-SQHSSSQSPRSHCRSLVPSFIAI 144 Query: 335 YSASVDDRDTVGCFRALHEMRL 270 YSASV + CF +E L Sbjct: 145 YSASVVLCALISCFLDPYETTL 166
>YMD9_YEAST (Q03434) Transposon Ty1 protein B| Length = 1328 Score = 31.6 bits (70), Expect = 2.2 Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L ++ P + ++ Sbjct: 1124 RFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISD 1183 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1184 ASYGNQPYYKSQIGNIYLLNG-KVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYL 1242 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + + R + +R++V+ L V +I + Sbjct: 1243 IQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIET 1302 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1303 KKNIADVMTKPL 1314
>YJZ7_YEAST (P47098) Transposon Ty1 protein B| Length = 1755 Score = 31.6 bits (70), Expect = 2.2 Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L ++ P + ++ Sbjct: 1551 RFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISD 1610 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1611 ASYGNQPYYKSQIGNIFLLNG-KVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYL 1669 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + + R + +R++V+ L V +I + Sbjct: 1670 IQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIET 1729 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1730 KKNIADVMTKPL 1741
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)| Length = 1770 Score = 30.8 bits (68), Expect = 3.7 Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Frame = +1 Query: 37 RPDLSFAVNKVCQYLSRPTDVH*EAVKTILHFVKGTVSTGLTLRRS----PSTLISIYTN 204 R DL + +N + Q++ P+ + ++ F+ T L ++ P + ++ Sbjct: 1566 RFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISD 1625 Query: 205 ADWAGCIDDRRSTGGFAVFFGPNLISWSARKQPTVSRSSTEAEYKALANGTAEATWLQSL 384 A + + G + G +I + K S+TEAE A++ L L Sbjct: 1626 ASYGNQPYYKSQIGNIFLLNG-KVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHL 1684 Query: 385 LRELGVCQPRAPVLWCDNLGATYLTANPVFHARTKHIEVDFHFVREKVAMKALKVRFISS 564 ++EL +L + + + R + +R++V+ L V +I + Sbjct: 1685 VQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIET 1744 Query: 565 ADQVADAFTKPL 600 +AD TKPL Sbjct: 1745 KKNIADVMTKPL 1756
>SYY_SYNAS (Q2LR98) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 428 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Frame = +1 Query: 253 AVFFGPNLISWSARKQPTVSRSSTEAEYKALA------NGTAEATWLQSLLRELGVCQPR 414 AV FG LI S T+ R + A+ N A+ ++ E G+C + Sbjct: 317 AVAFGVKLIDTSLMPSSTIPRGQLSQDASAIPFIKKSWNELAKGIPAYEIMHECGLCSSK 376 Query: 415 APVLWCDNLGATYLTANPVF 474 + G Y+ NP+F Sbjct: 377 SEARRLIAQGGGYVNENPIF 396
>ADCY8_RAT (P40146) Adenylate cyclase type 8 (EC 4.6.1.1) (Adenylate cyclase| type VIII) (ATP pyrophosphate-lyase 8) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1248 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 602 VKGFVNASATWSAEEMNRTFNAFMATF 522 VKGF N S T SA+E+ R N A F Sbjct: 417 VKGFTNLSTTLSAQELVRMLNELFARF 443
>ADCY8_HUMAN (P40145) Adenylate cyclase type 8 (EC 4.6.1.1) (Adenylate cyclase| type VIII) (ATP pyrophosphate-lyase 8) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1251 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 602 VKGFVNASATWSAEEMNRTFNAFMATF 522 VKGF N S T SA+E+ R N A F Sbjct: 420 VKGFTNLSTTLSAQELVRMLNELFARF 446
>ADCY8_MOUSE (P97490) Adenylate cyclase type 8 (EC 4.6.1.1) (Adenylate cyclase| type VIII) (ATP pyrophosphate-lyase 8) (Ca(2+)/calmodulin-activated adenylyl cyclase) Length = 1249 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 602 VKGFVNASATWSAEEMNRTFNAFMATF 522 VKGF N S T SA+E+ R N A F Sbjct: 418 VKGFTNLSTTLSAQELVRMLNELFARF 444
>H6ST1_CHICK (Q76KB2) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) (cHS6ST-1) Length = 408 Score = 29.6 bits (65), Expect = 8.3 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Frame = +1 Query: 22 YLTLTRPDLSFAVNKVCQYLSRPTDVH*EAV-KTILHFVKGTVSTGLTLRRSPSTLISIY 198 Y+TL R +S +YLS V A KT LH G T P L S Y Sbjct: 177 YITLLRDPVS-------RYLSEWRHVQRGATWKTSLHMCDGRTPT-------PEELPSCY 222 Query: 199 TNADWAGC 222 DW+GC Sbjct: 223 EGTDWSGC 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,393,708 Number of Sequences: 219361 Number of extensions: 1981343 Number of successful extensions: 5053 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4815 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5040 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)