ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown ... 270 6e-69
2gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 270 6e-69
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 270 6e-69
4dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 6e-69
5dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 6e-69
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 270 6e-69
7gb|AY110859.1| Zea mays CL41895_1 mRNA sequence 252 1e-63
8emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p1... 58 4e-05
9gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 44 0.62
10gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 44 0.62
11gb|AC116380.14| Mus musculus chromosome 1, clone RP23-6F21, comp... 44 0.62
12emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in... 42 2.5
13emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in... 42 2.5
14gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 42 2.5
15ref|NM_121761.2| Arabidopsis thaliana unknown protein AT5G17550 ... 40 9.7
16gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 9.7
17gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, com... 40 9.7
18gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Ho... 40 9.7
19gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence 40 9.7
20gb|AY149931.1| Arabidopsis thaliana At5g17550/K10A8_30 mRNA, com... 40 9.7
21emb|AL391151.1|ATK10A8 Arabidopsis thaliana DNA chromosome 5, BA... 40 9.7
22gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, comple... 40 9.7
23gb|AF329849.1|AF329849 Agrobacterium tumefaciens plasmid pTiAB2/... 40 9.7
24gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete se... 40 9.7
25gb|AF410297.1|AF410297 Arabidopsis thaliana AT5g17550/K10A8_30 m... 40 9.7
26gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosom... 40 9.7
27gb|AC027305.4|AC027305 Homo sapiens chromosome 5 clone CTB-184C1... 40 9.7
28emb|BX833106.1|CNS0A0I4 Arabidopsis thaliana Full-length cDNA Co... 40 9.7
29gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 9.7
30gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complet... 40 9.7
31dbj|AP002451.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.7
32gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 9.7
33emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chro... 40 9.7
34emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on ch... 40 9.7
35emb|AL844534.4| Mouse DNA sequence from clone RP23-59M10 on chro... 40 9.7

>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0018F16.3), mRNA
          Length = 2157

 Score =  270 bits (136), Expect = 6e-69
 Identities = 358/432 (82%)
 Strand = Plus / Minus

                                                                        
Query: 280  gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339
            ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 1905 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1846

                                                                        
Query: 340  cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399
            ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1845 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1786

                                                                        
Query: 400  cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459
             |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 1785 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1726

                                                                        
Query: 460  atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519
            ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 1725 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1666

                                                                        
Query: 520  tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579
            ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 1665 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1606

                                                                        
Query: 580  tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639
            ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 1605 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1546

                                                                        
Query: 640  ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699
            |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 1545 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1486

                        
Query: 700  aatggcagacac 711
            ||||||||||||
Sbjct: 1485 aatggcagacac 1474



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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score =  270 bits (136), Expect = 6e-69
 Identities = 358/432 (82%)
 Strand = Plus / Minus

                                                                         
Query: 280   gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339
             ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 42311 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 42252

                                                                         
Query: 340   cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399
             ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 42251 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 42192

                                                                         
Query: 400   cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459
              |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 42191 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 42132

                                                                         
Query: 460   atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519
             ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 42131 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 42072

                                                                         
Query: 520   tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579
             ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 42071 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 42012

                                                                         
Query: 580   tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639
             ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 42011 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 41952

                                                                         
Query: 640   ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699
             |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 41951 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 41892

                         
Query: 700   aatggcagacac 711
             ||||||||||||
Sbjct: 41891 aatggcagacac 41880



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  270 bits (136), Expect = 6e-69
 Identities = 358/432 (82%)
 Strand = Plus / Minus

                                                                            
Query: 280      gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339
                ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 16163422 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16163363

                                                                            
Query: 340      cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399
                ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 16163362 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16163303

                                                                            
Query: 400      cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459
                 |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 16163302 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16163243

                                                                            
Query: 460      atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519
                ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 16163242 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16163183

                                                                            
Query: 520      tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579
                ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 16163182 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16163123

                                                                            
Query: 580      tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639
                ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 16163122 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16163063

                                                                            
Query: 640      ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699
                |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 16163062 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16163003

                            
Query: 700      aatggcagacac 711
                ||||||||||||
Sbjct: 16163002 aatggcagacac 16162991



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>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full
            insert sequence
          Length = 2290

 Score =  270 bits (136), Expect = 6e-69
 Identities = 358/432 (82%)
 Strand = Plus / Minus

                                                                        
Query: 280  gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339
            ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 2008 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1949

                                                                        
Query: 340  cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399
            ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1948 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1889

                                                                        
Query: 400  cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459
             |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 1888 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1829

                                                                        
Query: 460  atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519
            ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 1828 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1769

                                                                        
Query: 520  tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579
            ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 1768 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1709

                                                                        
Query: 580  tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639
            ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 1708 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1649

                                                                        
Query: 640  ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699
            |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 1648 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1589

                        
Query: 700  aatggcagacac 711
            ||||||||||||
Sbjct: 1588 aatggcagacac 1577



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>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full
            insert sequence
          Length = 2230

 Score =  270 bits (136), Expect = 6e-69
 Identities = 358/432 (82%)
 Strand = Plus / Minus

                                                                        
Query: 280  gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339
            ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 1948 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1889

                                                                        
Query: 340  cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399
            ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1888 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1829

                                                                        
Query: 400  cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459
             |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 1828 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1769

                                                                        
Query: 460  atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519
            ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 1768 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1709

                                                                        
Query: 520  tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579
            ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 1708 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1649

                                                                        
Query: 580  tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639
            ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 1648 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1589

                                                                        
Query: 640  ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699
            |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 1588 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1529

                        
Query: 700  aatggcagacac 711
            ||||||||||||
Sbjct: 1528 aatggcagacac 1517



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  270 bits (136), Expect = 6e-69
 Identities = 358/432 (82%)
 Strand = Plus / Minus

                                                                            
Query: 280      gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339
                ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 16171663 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16171604

                                                                            
Query: 340      cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399
                ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 16171603 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16171544

                                                                            
Query: 400      cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459
                 |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 16171543 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16171484

                                                                            
Query: 460      atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519
                ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 16171483 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16171424

                                                                            
Query: 520      tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579
                ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 16171423 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16171364

                                                                            
Query: 580      tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639
                ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 16171363 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16171304

                                                                            
Query: 640      ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699
                |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 16171303 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16171244

                            
Query: 700      aatggcagacac 711
                ||||||||||||
Sbjct: 16171243 aatggcagacac 16171232



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>gb|AY110859.1| Zea mays CL41895_1 mRNA sequence
          Length = 888

 Score =  252 bits (127), Expect = 1e-63
 Identities = 383/470 (81%)
 Strand = Plus / Plus

                                                                       
Query: 239 tcagctcaccttactcaaccaggtattcaggaggaggctgcgcatgtattgacaccatcc 298
           |||||||||||||  | ||||  | ||||||| || |||| ||||||||| || ||||||
Sbjct: 222 tcagctcaccttagcccaccaaatgttcaggaagaagctgagcatgtattcacgccatcc 281

                                                                       
Query: 299 ttgcagtcgcgtgttaggtcattgaatgtctccaacttcctcttccccctgaggaacacc 358
           ||||| || ||||| || || |||||||||||||  | ||||||     | | ||| |||
Sbjct: 282 ttgcaatcacgtgtaagctcgttgaatgtctccacatgcctcttnnnnntcaagaatacc 341

                                                                       
Query: 359 tcagtgtcgactgcaaccctcatgtaaccatcgaactccaccggtttgccattgttgagc 418
           |||||||| ||||||| |||||| || ||||| || || || || |  |||||| | |||
Sbjct: 342 tcagtgtcaactgcaatcctcatatagccatcaaattctactggctgaccattgctcagc 401

                                                                       
Query: 419 tccttagtttcagcataccagtcactattttcatcccaaagatccttgaaatcatccagg 478
           |||||||||||||   |||| |||||||| |||||||| || | |||||||||||| |||
Sbjct: 402 tccttagtttcagtgaaccactcactattctcatcccacaggtacttgaaatcatcaagg 461

                                                                       
Query: 479 aaacgcgtcttgtacttgttcttcagcgggtcgaagaacgatttatcggactcatcggta 538
           ||  | || || ||||| | ||| || ||||  ||||||||||| || |  |||| ||||
Sbjct: 462 aagtgtgttttatacttttccttgagtgggttaaagaacgatttgtcaggttcattggta 521

                                                                       
Query: 539 gcaatgtacaaataccgtccagcaccaaccttatcattgagtgtcgtaaggagattttct 598
           ||||||||||||||||| |||||||||||||||||||| |||| | |||||||| | |||
Sbjct: 522 gcaatgtacaaataccggccagcaccaaccttatcattaagtgccataaggagactgtct 581

                                                                       
Query: 599 ggcgaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctc 658
           || |||||||||   ||||||||||||||||| ||||||||||| |||||||| ||||| 
Sbjct: 582 ggtgaggtatctctgtcaaggtttggccaaagttgtgtgttctgcgctttctcccctctg 641

                                                             
Query: 659 acaacatgcatcgagtcgaaatcccaactcattcgggaggcaatggcaga 708
           |||||||| | |||||| || |||||  |||| || ||||||||||||||
Sbjct: 642 acaacatggaccgagtcaaagtcccagttcatccgtgaggcaatggcaga 691



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>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE
          Length = 111128

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 602   gaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctcaca 661
             ||||||| ||||||||| ||||||||||||| | |||||   || || ||||||||||||
Sbjct: 20763 gaggtatgtgcatcaagatttggccaaagctctttgttcctcgccttttctcctctcaca 20704

                  
Query: 662   acatg 666
             |||||
Sbjct: 20703 acatg 20699



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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152737

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 436   ccagtcactattttcatcccaa 457
             ||||||||||||||||||||||
Sbjct: 94894 ccagtcactattttcatcccaa 94915



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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 436   ccagtcactattttcatcccaa 457
             ||||||||||||||||||||||
Sbjct: 35054 ccagtcactattttcatcccaa 35033



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>gb|AC116380.14| Mus musculus chromosome 1, clone RP23-6F21, complete sequence
          Length = 232429

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 64     gcaacaatgtaacataaccaaa 85
              ||||||||||||||||||||||
Sbjct: 196440 gcaacaatgtaacataaccaaa 196419



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>emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in linkage group 8,
           complete sequence
          Length = 153753

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 98  cgtgaatgaattaagtaaact 118
           |||||||||||||||||||||
Sbjct: 691 cgtgaatgaattaagtaaact 671



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>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete
              sequence
          Length = 155365

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     cgtgaatgaattaagtaaact 118
              |||||||||||||||||||||
Sbjct: 149875 cgtgaatgaattaagtaaact 149855



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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    catcgaactccaccggtttgc 407
              |||||||||||||||||||||
Sbjct: 383400 catcgaactccaccggtttgc 383380



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>ref|NM_121761.2| Arabidopsis thaliana unknown protein AT5G17550 mRNA, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 aagatccttgaaatcatcca 476
           ||||||||||||||||||||
Sbjct: 145 aagatccttgaaatcatcca 126



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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    atgtctccaacttcctcttc 343
              ||||||||||||||||||||
Sbjct: 138924 atgtctccaacttcctcttc 138943



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>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence
          Length = 238598

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    taaactagtgttacaacaaaacaa 136
              |||||||| |||||||||||||||
Sbjct: 107862 taaactagagttacaacaaaacaa 107839



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>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237199

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 613    atcaaggtttggccaaagct 632
              ||||||||||||||||||||
Sbjct: 208196 atcaaggtttggccaaagct 208177



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>gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    atgtctccaacttcctcttc 343
              ||||||||||||||||||||
Sbjct: 118528 atgtctccaacttcctcttc 118547



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>gb|AY149931.1| Arabidopsis thaliana At5g17550/K10A8_30 mRNA, complete cds
          Length = 738

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 aagatccttgaaatcatcca 476
           ||||||||||||||||||||
Sbjct: 72  aagatccttgaaatcatcca 53



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>emb|AL391151.1|ATK10A8 Arabidopsis thaliana DNA chromosome 5, BAC clone K10A8 (ESSA project)
          Length = 43387

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   aagatccttgaaatcatcca 476
             ||||||||||||||||||||
Sbjct: 11605 aagatccttgaaatcatcca 11624



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>gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, complete sequence
          Length = 178030

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   tctccaacttcctcttcccc 346
             ||||||||||||||||||||
Sbjct: 33537 tctccaacttcctcttcccc 33518



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>gb|AF329849.1|AF329849 Agrobacterium tumefaciens plasmid pTiAB2/73 vir region, complete
             sequence
          Length = 32495

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 335   ttcctcttccccctgaggaacacc 358
             ||||||||||||| ||||||||||
Sbjct: 25787 ttcctcttcccccagaggaacacc 25764



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>gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete sequence
          Length = 224361

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    atgtctccaacttcctcttc 343
              ||||||||||||||||||||
Sbjct: 138924 atgtctccaacttcctcttc 138943



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>gb|AF410297.1|AF410297 Arabidopsis thaliana AT5g17550/K10A8_30 mRNA, complete cds
          Length = 994

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 aagatccttgaaatcatcca 476
           ||||||||||||||||||||
Sbjct: 145 aagatccttgaaatcatcca 126



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>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete
           sequence
          Length = 186410

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 113 taaactagtgttacaacaaaacaa 136
           |||||||| |||||||||||||||
Sbjct: 359 taaactagagttacaacaaaacaa 382



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>gb|AC027305.4|AC027305 Homo sapiens chromosome 5 clone CTB-184C17, complete sequence
          Length = 72259

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tctccaacttcctcttcccc 346
             ||||||||||||||||||||
Sbjct: 67126 tctccaacttcctcttcccc 67145



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>emb|BX833106.1|CNS0A0I4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZD12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1012

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 aagatccttgaaatcatcca 476
           ||||||||||||||||||||
Sbjct: 108 aagatccttgaaatcatcca 89



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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   atgtctccaacttcctcttc 343
             ||||||||||||||||||||
Sbjct: 22614 atgtctccaacttcctcttc 22633



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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    tctccaacttcctcttcccc 346
              ||||||||||||||||||||
Sbjct: 158092 tctccaacttcctcttcccc 158111



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>dbj|AP002451.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-792P2, complete
             sequence
          Length = 50359

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   tgtctccaacttcctcttcc 344
             ||||||||||||||||||||
Sbjct: 39283 tgtctccaacttcctcttcc 39302



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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    atgtctccaacttcctcttc 343
              ||||||||||||||||||||
Sbjct: 118528 atgtctccaacttcctcttc 118547



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>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete
             sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 204   ttcaaaaacactctatcaagaataataa 231
             |||||| ||| |||||||||||||||||
Sbjct: 17065 ttcaaatacattctatcaagaataataa 17092



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>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete
             sequence
          Length = 182829

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 637   gttctgggctttctctcctctcac 660
             ||||||||||||||||| ||||||
Sbjct: 18318 gttctgggctttctctcatctcac 18295



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>emb|AL844534.4| Mouse DNA sequence from clone RP23-59M10 on chromosome 2, complete
             sequence
          Length = 107752

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ggtttgccattgttgagctc 420
             ||||||||||||||||||||
Sbjct: 45761 ggtttgccattgttgagctc 45742


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,120,079
Number of Sequences: 3902068
Number of extensions: 6120079
Number of successful extensions: 118081
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117905
Number of HSP's gapped (non-prelim): 174
length of query: 711
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 688
effective length of database: 17,143,297,704
effective search space: 11794588820352
effective search space used: 11794588820352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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