Clone Name | rbasd11i18 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA Length = 2157 Score = 270 bits (136), Expect = 6e-69 Identities = 358/432 (82%) Strand = Plus / Minus Query: 280 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339 ||||||||||||||||| |||||| || || || || ||| ||||||||||||| ||||| Sbjct: 1905 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1846 Query: 340 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 1845 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1786 Query: 400 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 1785 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1726 Query: 460 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 1725 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1666 Query: 520 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 1665 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1606 Query: 580 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 1605 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1546 Query: 640 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 1545 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1486 Query: 700 aatggcagacac 711 |||||||||||| Sbjct: 1485 aatggcagacac 1474
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 270 bits (136), Expect = 6e-69 Identities = 358/432 (82%) Strand = Plus / Minus Query: 280 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339 ||||||||||||||||| |||||| || || || || ||| ||||||||||||| ||||| Sbjct: 42311 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 42252 Query: 340 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 42251 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 42192 Query: 400 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 42191 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 42132 Query: 460 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 42131 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 42072 Query: 520 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 42071 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 42012 Query: 580 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 42011 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 41952 Query: 640 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 41951 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 41892 Query: 700 aatggcagacac 711 |||||||||||| Sbjct: 41891 aatggcagacac 41880
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 270 bits (136), Expect = 6e-69 Identities = 358/432 (82%) Strand = Plus / Minus Query: 280 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339 ||||||||||||||||| |||||| || || || || ||| ||||||||||||| ||||| Sbjct: 16163422 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16163363 Query: 340 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 16163362 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16163303 Query: 400 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 16163302 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16163243 Query: 460 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 16163242 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16163183 Query: 520 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 16163182 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16163123 Query: 580 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 16163122 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16163063 Query: 640 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 16163062 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16163003 Query: 700 aatggcagacac 711 |||||||||||| Sbjct: 16163002 aatggcagacac 16162991
>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence Length = 2290 Score = 270 bits (136), Expect = 6e-69 Identities = 358/432 (82%) Strand = Plus / Minus Query: 280 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339 ||||||||||||||||| |||||| || || || || ||| ||||||||||||| ||||| Sbjct: 2008 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1949 Query: 340 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 1948 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1889 Query: 400 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 1888 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1829 Query: 460 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 1828 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1769 Query: 520 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 1768 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1709 Query: 580 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 1708 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1649 Query: 640 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 1648 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1589 Query: 700 aatggcagacac 711 |||||||||||| Sbjct: 1588 aatggcagacac 1577
>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full insert sequence Length = 2230 Score = 270 bits (136), Expect = 6e-69 Identities = 358/432 (82%) Strand = Plus / Minus Query: 280 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339 ||||||||||||||||| |||||| || || || || ||| ||||||||||||| ||||| Sbjct: 1948 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1889 Query: 340 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 1888 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1829 Query: 400 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 1828 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1769 Query: 460 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 1768 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1709 Query: 520 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 1708 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1649 Query: 580 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 1648 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1589 Query: 640 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 1588 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1529 Query: 700 aatggcagacac 711 |||||||||||| Sbjct: 1528 aatggcagacac 1517
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 270 bits (136), Expect = 6e-69 Identities = 358/432 (82%) Strand = Plus / Minus Query: 280 gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 339 ||||||||||||||||| |||||| || || || || ||| ||||||||||||| ||||| Sbjct: 16171663 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16171604 Query: 340 cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 399 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 16171603 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16171544 Query: 400 cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 459 | || |||||| | |||||||| ||||||| ||||| || || || |||||||| | Sbjct: 16171543 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16171484 Query: 460 atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 519 ||||||||| ||||||||||| | || ||||| ||||| ||||| ||||| || Sbjct: 16171483 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16171424 Query: 520 tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 579 |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||||||||| || Sbjct: 16171423 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16171364 Query: 580 tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 639 ||||||||||||| | ||||| || |||||| |||||| |||||||| | |||| |||| Sbjct: 16171363 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16171304 Query: 640 ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 699 |||||||||||| || ||||||||||| | || || || |||||| ||| ||||||| Sbjct: 16171303 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16171244 Query: 700 aatggcagacac 711 |||||||||||| Sbjct: 16171243 aatggcagacac 16171232
>gb|AY110859.1| Zea mays CL41895_1 mRNA sequence Length = 888 Score = 252 bits (127), Expect = 1e-63 Identities = 383/470 (81%) Strand = Plus / Plus Query: 239 tcagctcaccttactcaaccaggtattcaggaggaggctgcgcatgtattgacaccatcc 298 ||||||||||||| | |||| | ||||||| || |||| ||||||||| || |||||| Sbjct: 222 tcagctcaccttagcccaccaaatgttcaggaagaagctgagcatgtattcacgccatcc 281 Query: 299 ttgcagtcgcgtgttaggtcattgaatgtctccaacttcctcttccccctgaggaacacc 358 ||||| || ||||| || || ||||||||||||| | |||||| | | ||| ||| Sbjct: 282 ttgcaatcacgtgtaagctcgttgaatgtctccacatgcctcttnnnnntcaagaatacc 341 Query: 359 tcagtgtcgactgcaaccctcatgtaaccatcgaactccaccggtttgccattgttgagc 418 |||||||| ||||||| |||||| || ||||| || || || || | |||||| | ||| Sbjct: 342 tcagtgtcaactgcaatcctcatatagccatcaaattctactggctgaccattgctcagc 401 Query: 419 tccttagtttcagcataccagtcactattttcatcccaaagatccttgaaatcatccagg 478 ||||||||||||| |||| |||||||| |||||||| || | |||||||||||| ||| Sbjct: 402 tccttagtttcagtgaaccactcactattctcatcccacaggtacttgaaatcatcaagg 461 Query: 479 aaacgcgtcttgtacttgttcttcagcgggtcgaagaacgatttatcggactcatcggta 538 || | || || ||||| | ||| || |||| ||||||||||| || | |||| |||| Sbjct: 462 aagtgtgttttatacttttccttgagtgggttaaagaacgatttgtcaggttcattggta 521 Query: 539 gcaatgtacaaataccgtccagcaccaaccttatcattgagtgtcgtaaggagattttct 598 ||||||||||||||||| |||||||||||||||||||| |||| | |||||||| | ||| Sbjct: 522 gcaatgtacaaataccggccagcaccaaccttatcattaagtgccataaggagactgtct 581 Query: 599 ggcgaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctc 658 || ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 582 ggtgaggtatctctgtcaaggtttggccaaagttgtgtgttctgcgctttctcccctctg 641 Query: 659 acaacatgcatcgagtcgaaatcccaactcattcgggaggcaatggcaga 708 |||||||| | |||||| || ||||| |||| || |||||||||||||| Sbjct: 642 acaacatggaccgagtcaaagtcccagttcatccgtgaggcaatggcaga 691
>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE Length = 111128 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 602 gaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctcaca 661 ||||||| ||||||||| ||||||||||||| | ||||| || || |||||||||||| Sbjct: 20763 gaggtatgtgcatcaagatttggccaaagctctttgttcctcgccttttctcctctcaca 20704 Query: 662 acatg 666 ||||| Sbjct: 20703 acatg 20699
>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152737 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 436 ccagtcactattttcatcccaa 457 |||||||||||||||||||||| Sbjct: 94894 ccagtcactattttcatcccaa 94915
>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence Length = 183917 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 436 ccagtcactattttcatcccaa 457 |||||||||||||||||||||| Sbjct: 35054 ccagtcactattttcatcccaa 35033
>gb|AC116380.14| Mus musculus chromosome 1, clone RP23-6F21, complete sequence Length = 232429 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 gcaacaatgtaacataaccaaa 85 |||||||||||||||||||||| Sbjct: 196440 gcaacaatgtaacataaccaaa 196419
>emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in linkage group 8, complete sequence Length = 153753 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cgtgaatgaattaagtaaact 118 ||||||||||||||||||||| Sbjct: 691 cgtgaatgaattaagtaaact 671
>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete sequence Length = 155365 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cgtgaatgaattaagtaaact 118 ||||||||||||||||||||| Sbjct: 149875 cgtgaatgaattaagtaaact 149855
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 catcgaactccaccggtttgc 407 ||||||||||||||||||||| Sbjct: 383400 catcgaactccaccggtttgc 383380
>ref|NM_121761.2| Arabidopsis thaliana unknown protein AT5G17550 mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 aagatccttgaaatcatcca 476 |||||||||||||||||||| Sbjct: 145 aagatccttgaaatcatcca 126
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgtctccaacttcctcttc 343 |||||||||||||||||||| Sbjct: 138924 atgtctccaacttcctcttc 138943
>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence Length = 238598 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 taaactagtgttacaacaaaacaa 136 |||||||| ||||||||||||||| Sbjct: 107862 taaactagagttacaacaaaacaa 107839
>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research Institute) complete sequence Length = 237199 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 atcaaggtttggccaaagct 632 |||||||||||||||||||| Sbjct: 208196 atcaaggtttggccaaagct 208177
>gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence Length = 182435 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgtctccaacttcctcttc 343 |||||||||||||||||||| Sbjct: 118528 atgtctccaacttcctcttc 118547
>gb|AY149931.1| Arabidopsis thaliana At5g17550/K10A8_30 mRNA, complete cds Length = 738 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 aagatccttgaaatcatcca 476 |||||||||||||||||||| Sbjct: 72 aagatccttgaaatcatcca 53
>emb|AL391151.1|ATK10A8 Arabidopsis thaliana DNA chromosome 5, BAC clone K10A8 (ESSA project) Length = 43387 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 aagatccttgaaatcatcca 476 |||||||||||||||||||| Sbjct: 11605 aagatccttgaaatcatcca 11624
>gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, complete sequence Length = 178030 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tctccaacttcctcttcccc 346 |||||||||||||||||||| Sbjct: 33537 tctccaacttcctcttcccc 33518
>gb|AF329849.1|AF329849 Agrobacterium tumefaciens plasmid pTiAB2/73 vir region, complete sequence Length = 32495 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ttcctcttccccctgaggaacacc 358 ||||||||||||| |||||||||| Sbjct: 25787 ttcctcttcccccagaggaacacc 25764
>gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete sequence Length = 224361 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgtctccaacttcctcttc 343 |||||||||||||||||||| Sbjct: 138924 atgtctccaacttcctcttc 138943
>gb|AF410297.1|AF410297 Arabidopsis thaliana AT5g17550/K10A8_30 mRNA, complete cds Length = 994 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 aagatccttgaaatcatcca 476 |||||||||||||||||||| Sbjct: 145 aagatccttgaaatcatcca 126
>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence Length = 186410 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 taaactagtgttacaacaaaacaa 136 |||||||| ||||||||||||||| Sbjct: 359 taaactagagttacaacaaaacaa 382
>gb|AC027305.4|AC027305 Homo sapiens chromosome 5 clone CTB-184C17, complete sequence Length = 72259 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tctccaacttcctcttcccc 346 |||||||||||||||||||| Sbjct: 67126 tctccaacttcctcttcccc 67145
>emb|BX833106.1|CNS0A0I4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZD12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1012 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 aagatccttgaaatcatcca 476 |||||||||||||||||||| Sbjct: 108 aagatccttgaaatcatcca 89
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgtctccaacttcctcttc 343 |||||||||||||||||||| Sbjct: 22614 atgtctccaacttcctcttc 22633
>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence Length = 182776 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tctccaacttcctcttcccc 346 |||||||||||||||||||| Sbjct: 158092 tctccaacttcctcttcccc 158111
>dbj|AP002451.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-792P2, complete sequence Length = 50359 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tgtctccaacttcctcttcc 344 |||||||||||||||||||| Sbjct: 39283 tgtctccaacttcctcttcc 39302
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgtctccaacttcctcttc 343 |||||||||||||||||||| Sbjct: 118528 atgtctccaacttcctcttc 118547
>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete sequence Length = 148202 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 ttcaaaaacactctatcaagaataataa 231 |||||| ||| ||||||||||||||||| Sbjct: 17065 ttcaaatacattctatcaagaataataa 17092
>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete sequence Length = 182829 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 637 gttctgggctttctctcctctcac 660 ||||||||||||||||| |||||| Sbjct: 18318 gttctgggctttctctcatctcac 18295
>emb|AL844534.4| Mouse DNA sequence from clone RP23-59M10 on chromosome 2, complete sequence Length = 107752 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ggtttgccattgttgagctc 420 |||||||||||||||||||| Sbjct: 45761 ggtttgccattgttgagctc 45742 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,120,079 Number of Sequences: 3902068 Number of extensions: 6120079 Number of successful extensions: 118081 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117905 Number of HSP's gapped (non-prelim): 174 length of query: 711 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 688 effective length of database: 17,143,297,704 effective search space: 11794588820352 effective search space used: 11794588820352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)