ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11i11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel al... 30 6.5
2VPRE2_MOUSE (P13373) Immunoglobulin omega chain precursor (VpreB... 30 8.5
3VPRE1_MOUSE (P13372) Immunoglobulin iota chain precursor (VPreB1... 30 8.5

>CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel alpha-1E subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.3)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 6)
            (Brain calcium channel II) (BII)
          Length = 2259

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 318  DQGVQDAGPRGVVDRGSASGLEEAVHEEER 407
            D+G    G R    RGS  G E  +HEEER
Sbjct: 940  DEGASTEGERDHEARGSHGGKEPTIHEEER 969



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>VPRE2_MOUSE (P13373) Immunoglobulin omega chain precursor (VpreB2 protein)|
          Length = 142

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 188 CTAASDNNLAVASILWFQQYKRH 256
           CT ++D+N+ + SI W+QQ   H
Sbjct: 41  CTLSNDHNIGIYSIYWYQQRPGH 63



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>VPRE1_MOUSE (P13372) Immunoglobulin iota chain precursor (VPreB1 protein)|
          Length = 142

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 188 CTAASDNNLAVASILWFQQYKRH 256
           CT ++D+N+ + SI W+QQ   H
Sbjct: 41  CTLSNDHNIGIYSIYWYQQRPGH 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,953,729
Number of Sequences: 219361
Number of extensions: 2318805
Number of successful extensions: 6490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6489
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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