Clone Name | rbasd11i11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel al... | 30 | 6.5 | 2 | VPRE2_MOUSE (P13373) Immunoglobulin omega chain precursor (VpreB... | 30 | 8.5 | 3 | VPRE1_MOUSE (P13372) Immunoglobulin iota chain precursor (VPreB1... | 30 | 8.5 |
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>CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2259 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 318 DQGVQDAGPRGVVDRGSASGLEEAVHEEER 407 D+G G R RGS G E +HEEER Sbjct: 940 DEGASTEGERDHEARGSHGGKEPTIHEEER 969
>VPRE2_MOUSE (P13373) Immunoglobulin omega chain precursor (VpreB2 protein)| Length = 142 Score = 29.6 bits (65), Expect = 8.5 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 188 CTAASDNNLAVASILWFQQYKRH 256 CT ++D+N+ + SI W+QQ H Sbjct: 41 CTLSNDHNIGIYSIYWYQQRPGH 63
>VPRE1_MOUSE (P13372) Immunoglobulin iota chain precursor (VPreB1 protein)| Length = 142 Score = 29.6 bits (65), Expect = 8.5 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 188 CTAASDNNLAVASILWFQQYKRH 256 CT ++D+N+ + SI W+QQ H Sbjct: 41 CTLSNDHNIGIYSIYWYQQRPGH 63 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,953,729 Number of Sequences: 219361 Number of extensions: 2318805 Number of successful extensions: 6490 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 6174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6489 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)