ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11i10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1209 bits (610), Expect = 0.0 Identities = 629/634 (99%), Gaps = 1/634 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 49901 ctccttttcgccatgcataaactaaaccaacaactaagataagcacgaaaatcaaagctt 49960 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49961 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 50020 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50021 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 50080 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50081 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 50140 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 50141 cactaaccggggctaaaagtcctgaaatcgaaaatgccaaaataggaataaggcttgcta 50200 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataatgtactcccatt 359 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 50201 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataatgtactcccatt 50260 Query: 360 aatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatccag 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50261 aatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatccag 50320 Query: 420 aacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttagt 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50321 aacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttagt 50380 Query: 480 ttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaac 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50381 ttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaac 50440 Query: 540 tccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttata 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50441 tccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttata 50500 Query: 600 taaagaaaactttatcgtttcactttgtctcgct 633 ||||||||||||| |||||||||||||||||||| Sbjct: 50501 taaagaaaactttctcgtttcactttgtctcgct 50534
>gb|J04954.1|WHTCPPSBG Triticum aestivum chloroplast NADPH-plastoquinone oxireductase (psbG) and thylakoid membrane protein (ndhC) genes, complete cds Length = 1492 Score = 1130 bits (570), Expect = 0.0 Identities = 586/590 (99%), Gaps = 1/590 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 590 ctccttttcgccatgcataaactaaaccaacaactaagataagcacgaaaatcaaagctt 531 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 471 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 411 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 351 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 350 cactaaccggggctaaaagtcctgaaatcgaaaatgccaaaataggaataaggcttgcta 291 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataatgtactcccatt 359 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 290 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataatgtactcccatt 231 Query: 360 aatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatccag 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 aatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatccag 171 Query: 420 aacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttagt 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 170 aacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttagt 111 Query: 480 ttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaac 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110 ttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaac 51 Query: 540 tccctttcttttggatttccattctatttagatatggtgtatgtagatct 589 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50 tccctttcttttggatttccattctatttagatatggtgtatgtagatct 1
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 815 bits (411), Expect = 0.0 Identities = 580/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 49258 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 49317 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 49318 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 49377 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 49378 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 49437 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49438 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 49497 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 49498 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 49557 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 49558 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 49617 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 49618 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 49676 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 49677 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 49736 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 49737 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 49796 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 ||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 49797 ctccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 49852 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 49853 agaaacaaaactctctcgcttcactttgtctc 49884
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 807 bits (407), Expect = 0.0 Identities = 579/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 49310 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 49369 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 49370 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 49429 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 49430 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 49489 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49490 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 49549 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 49550 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 49609 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 49610 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 49669 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 49670 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 49728 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 49729 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 49788 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 49789 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 49848 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 | ||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 49849 ccccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 49904 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 49905 agaaacaaaactctctcgcttcactttgtctc 49936
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 807 bits (407), Expect = 0.0 Identities = 579/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 49310 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 49369 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 49370 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 49429 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 49430 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 49489 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49490 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 49549 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 49550 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 49609 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 49610 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 49669 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 49670 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 49728 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 49729 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 49788 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 49789 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 49848 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 | ||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 49849 ccccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 49904 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 49905 agaaacaaaactctctcgcttcactttgtctc 49936
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 807 bits (407), Expect = 0.0 Identities = 580/632 (91%), Gaps = 8/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 47513 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 47572 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 47573 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 47632 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 47633 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 47692 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47693 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 47751 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 47752 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 47811 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 47812 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 47871 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 47872 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 47930 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 47931 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 47990 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 47991 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 48050 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 ||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 48051 ctccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 48106 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 48107 agaaacaaaactctctcgcttcactttgtctc 48138
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 807 bits (407), Expect = 0.0 Identities = 580/632 (91%), Gaps = 8/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 122446 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 122505 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 122506 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 122565 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 122566 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 122625 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122626 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 122684 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 122685 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 122744 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 122745 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 122804 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 122805 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 122863 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 122864 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 122923 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 122924 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 122983 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 ||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 122984 ctccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 123039 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 123040 agaaacaaaactctctcgcttcactttgtctc 123071
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 807 bits (407), Expect = 0.0 Identities = 579/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 19945292 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 19945233 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 19945232 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 19945173 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 19945172 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 19945113 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19945112 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 19945053 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 19945052 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 19944993 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 19944992 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 19944933 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 19944932 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 19944874 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 19944873 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 19944814 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 19944813 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 19944754 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 | ||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 19944753 ccccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 19944698 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 19944697 agaaacaaaactctctcgcttcactttgtctc 19944666 Score = 807 bits (407), Expect = 0.0 Identities = 580/632 (91%), Gaps = 8/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 10341121 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 10341180 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 10341181 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 10341240 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 10341241 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 10341300 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10341301 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 10341359 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 10341360 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 10341419 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 10341420 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 10341479 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 10341480 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 10341538 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 10341539 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 10341598 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 10341599 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 10341658 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 ||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 10341659 ctccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 10341714 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 10341715 agaaacaaaactctctcgcttcactttgtctc 10341746
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 807 bits (407), Expect = 0.0 Identities = 579/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 40751 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 40810 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 40811 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 40870 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 40871 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 40930 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40931 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 40990 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 40991 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 41050 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 41051 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 41110 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 41111 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 41169 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 41170 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 41229 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 41230 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 41289 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 | ||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 41290 ccccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 41345 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 41346 agaaacaaaactctctcgcttcactttgtctc 41377
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 807 bits (407), Expect = 0.0 Identities = 579/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 19956568 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 19956509 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 19956508 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 19956449 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 19956448 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 19956389 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19956388 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 19956329 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 19956328 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 19956269 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 19956268 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 19956209 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 19956208 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 19956150 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 19956149 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 19956090 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 19956089 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 19956030 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 | ||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 19956029 ccccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 19955974 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 19955973 agaaacaaaactctctcgcttcactttgtctc 19955942 Score = 807 bits (407), Expect = 0.0 Identities = 580/632 (91%), Gaps = 8/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 10347160 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 10347219 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 10347220 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 10347279 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 10347280 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 10347339 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10347340 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 10347398 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 10347399 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 10347458 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 10347459 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 10347518 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 10347519 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 10347577 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 10347578 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 10347637 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 10347638 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 10347697 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 ||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 10347698 ctccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 10347753 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 10347754 agaaacaaaactctctcgcttcactttgtctc 10347785
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 807 bits (407), Expect = 0.0 Identities = 579/632 (91%), Gaps = 7/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 49237 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 49296 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 49297 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 49356 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 49357 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 49416 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49417 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 49476 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 49477 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 49536 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 49537 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 49596 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 49597 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 49655 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 49656 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 49715 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 49716 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 49775 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 ||||||||||||| ||||| | |||||||||| ||||| || ||| |||||||||| Sbjct: 49776 ctccctttctttttgatttactttctatttaggtatgg----tggagacataattcttat 49831 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 49832 agaaacaaaactctctcgcttcactttgtctc 49863
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 801 bits (404), Expect = 0.0 Identities = 539/580 (92%), Gaps = 3/580 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 11285472 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 11285531 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 11285532 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 11285591 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 11285592 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 11285651 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11285652 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 11285711 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 11285712 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 11285771 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 11285772 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 11285831 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 11285832 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 11285890 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 11285891 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 11285950 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 11285951 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 11286010 Query: 539 ctccctttcttttggatttccattctatttagatatggtg 578 ||||||||||||| |||||| |||||||||| ||||||| Sbjct: 11286011 ctccctttcttttttatttcctttctatttaggtatggtg 11286050 Score = 777 bits (392), Expect = 0.0 Identities = 578/633 (91%), Gaps = 9/633 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 5608348 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 5608407 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 5608408 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 5608467 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 5608468 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 5608527 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5608528 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 5608586 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgc-caaaataggaataaggcttgct 298 ||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 5608587 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaataggaataaggcttgct 5608646 Query: 299 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccca 357 ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct: 5608647 attattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccca 5608706 Query: 358 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 417 ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | | Sbjct: 5608707 ttaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttttac 5608765 Query: 418 agaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctta 477 |||| |||||| ||||||||||||||||||| ||| |||| |||||| |||| ||||| Sbjct: 5608766 agaatttctcttttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctta 5608825 Query: 478 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 537 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 5608826 gtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccg 5608885 Query: 538 actccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctta 597 |||||||||||||| ||||||| |||||||||| ||||| || ||| ||||||||| Sbjct: 5608886 actccctttctttttgatttcctttctatttaggtatgg----tggagacataattctta 5608941 Query: 598 tataaagaaaactttatcgtttcactttgtctc 630 || ||| |||||| | ||| ||||||||||||| Sbjct: 5608942 tagaaacaaaactctctcgcttcactttgtctc 5608974 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 382 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 434 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 7761368 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 7761316
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 801 bits (404), Expect = 0.0 Identities = 539/580 (92%), Gaps = 3/580 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 11285143 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 11285202 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 11285203 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 11285262 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 11285263 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 11285322 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11285323 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 11285382 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 11285383 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 11285442 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 11285443 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 11285502 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 11285503 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 11285561 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 11285562 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 11285621 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 11285622 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 11285681 Query: 539 ctccctttcttttggatttccattctatttagatatggtg 578 ||||||||||||| |||||| |||||||||| ||||||| Sbjct: 11285682 ctccctttcttttttatttcctttctatttaggtatggtg 11285721 Score = 777 bits (392), Expect = 0.0 Identities = 578/633 (91%), Gaps = 9/633 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 5608337 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 5608396 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 5608397 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 5608456 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 5608457 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 5608516 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5608517 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 5608575 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgc-caaaataggaataaggcttgct 298 ||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 5608576 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaataggaataaggcttgct 5608635 Query: 299 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccca 357 ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct: 5608636 attattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccca 5608695 Query: 358 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 417 ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | | Sbjct: 5608696 ttaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttttac 5608754 Query: 418 agaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctta 477 |||| |||||| ||||||||||||||||||| ||| |||| |||||| |||| ||||| Sbjct: 5608755 agaatttctcttttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctta 5608814 Query: 478 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 537 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 5608815 gtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccg 5608874 Query: 538 actccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctta 597 |||||||||||||| ||||||| |||||||||| ||||| || ||| ||||||||| Sbjct: 5608875 actccctttctttttgatttcctttctatttaggtatgg----tggagacataattctta 5608930 Query: 598 tataaagaaaactttatcgtttcactttgtctc 630 || ||| |||||| | ||| ||||||||||||| Sbjct: 5608931 tagaaacaaaactctctcgcttcactttgtctc 5608963 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 382 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 434 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 7761249 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 7761197
>emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127267 Score = 801 bits (404), Expect = 0.0 Identities = 539/580 (92%), Gaps = 3/580 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 86582 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 86523 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 86522 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 86463 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 86462 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 86403 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86402 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 86343 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 86342 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 86283 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 86282 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 86223 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 86222 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 86164 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 86163 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggcttag 86104 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 86103 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 86044 Query: 539 ctccctttcttttggatttccattctatttagatatggtg 578 ||||||||||||| |||||| |||||||||| ||||||| Sbjct: 86043 ctccctttcttttttatttcctttctatttaggtatggtg 86004
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 799 bits (403), Expect = 0.0 Identities = 579/632 (91%), Gaps = 8/632 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 49317 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 49376 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 49377 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 49436 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 49437 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 49496 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49497 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 49556 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 49557 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 49616 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 49617 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 49676 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| || Sbjct: 49677 taatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttataca 49735 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgcttag 478 ||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||||| Sbjct: 49736 gaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaag-gcttag 49794 Query: 479 tttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcccaa 538 ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct: 49795 tttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccga 49854 Query: 539 ctccctttcttttggatttccattctatttagatatggtgtatgtagatctaattcttat 598 | ||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 49855 ccccctttctttttgatttcctttctatttaggtatgg----tggagacataattcttat 49910 Query: 599 ataaagaaaactttatcgtttcactttgtctc 630 | ||| |||||| | ||| ||||||||||||| Sbjct: 49911 agaaacaaaactctctcgcttcactttgtctc 49942
>emb|X00408.1|CHHV01 Hordeum vulgare chloroplast genes for ATPase subunits B and E, transfer RNA2-Met and transfer RNA1-Val Length = 3819 Score = 783 bits (395), Expect = 0.0 Identities = 407/411 (99%) Strand = Plus / Minus Query: 223 aagcttctctggtccttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaat 282 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3819 aagcttctctggtccttcactaaccggggctaaaatgcctgaaatcgaaaatgccaaaat 3760 Query: 283 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaa 342 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3759 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtgaagcagaaa 3700 Query: 343 cataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagc 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3699 cataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagc 3640 Query: 403 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttc 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3639 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttc 3580 Query: 463 aaacaaaagcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattca 522 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 3579 aaacaaaagcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagcttca 3520 Query: 523 tccaatggaatcccaactccctttcttttggatttccattctatttagatatggtgtatg 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3519 tccaatggaatcccaactccctttcttttggatttccattctatttagatatggtgtatg 3460 Query: 583 tagatctaattcttatataaagaaaactttatcgtttcactttgtctcgct 633 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3459 tagatctaattcttatataaagaaaactttatcgtttcactttgtctcgct 3409
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 781 bits (394), Expect = 0.0 Identities = 581/640 (90%), Gaps = 15/640 (2%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 51872 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 51931 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 51932 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagactg 51991 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 51992 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 52051 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52052 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 52111 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct: 52112 cactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgcta 52171 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 52172 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 52231 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| Sbjct: 52232 taatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatcca 52290 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaa--------a 470 ||||||||||||||||||||||||||||||||||| ||||| |||||| || | Sbjct: 52291 gaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaagga 52350 Query: 471 gcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatgg 530 ||||||| |||||||||| |||| | |||| | ||||| |||| ||||||||||||| Sbjct: 52351 gcgcttactttagcctttatttcttttgtgatatgtcttccttaaggattcatccaatgt 52410 Query: 531 aatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatcta 590 |||||| ||| || ||||||| ||||||| ||||||||||||||| || |||| ||| Sbjct: 52411 aatccccacttcccttctttttgatttcccttctatttagatatg----atatagaccta 52466 Query: 591 attcttatataaagaaaactttatcgtttcactttgtctc 630 ||||||||| |||||||||| | ||| ||||||||||||| Sbjct: 52467 attcttatacaaagaaaactctttcgcttcactttgtctc 52506
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 781 bits (394), Expect = 0.0 Identities = 581/640 (90%), Gaps = 15/640 (2%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 114026 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 114085 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 114086 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagactg 114145 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 114146 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 114205 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114206 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 114265 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct: 114266 cactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgcta 114325 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 114326 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 114385 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| Sbjct: 114386 taatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatcca 114444 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaa--------a 470 ||||||||||||||||||||||||||||||||||| ||||| |||||| || | Sbjct: 114445 gaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaagga 114504 Query: 471 gcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatgg 530 ||||||| ||||||||||||||| | |||| | ||||| |||| ||||||||||||| Sbjct: 114505 gcgcttactttagcctttgtttcttttgtgatatgtcttccttaaggattcatccaatgt 114564 Query: 531 aatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatcta 590 |||||| ||| | ||||||| ||||||| ||||||||||||||| || |||| ||| Sbjct: 114565 aatccccacttgccttctttttgatttcccttctatttagatatg----atatagaccta 114620 Query: 591 attcttatataaagaaaactttatcgtttcactttgtctc 630 ||||||||| |||||||||| | ||| ||||||||||||| Sbjct: 114621 attcttatacaaagaaaactctttcgcttcactttgtctc 114660
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 781 bits (394), Expect = 0.0 Identities = 581/640 (90%), Gaps = 15/640 (2%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 51861 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 51920 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 51921 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagactg 51980 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 51981 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 52040 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52041 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 52100 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct: 52101 cactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgcta 52160 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 52161 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 52220 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| Sbjct: 52221 taatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatcca 52279 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaa--------a 470 ||||||||||||||||||||||||||||||||||| ||||| |||||| || | Sbjct: 52280 gaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaagga 52339 Query: 471 gcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatgg 530 ||||||| |||||||||| |||| | |||| | ||||| |||| ||||||||||||| Sbjct: 52340 gcgcttactttagcctttatttcttttgtgatatgtcttccttaaggattcatccaatgt 52399 Query: 531 aatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatcta 590 |||||| ||| || ||||||| ||||||| ||||||||||||||| || |||| ||| Sbjct: 52400 aatccccacttcccttctttttgatttcccttctatttagatatg----atatagaccta 52455 Query: 591 attcttatataaagaaaactttatcgtttcactttgtctc 630 ||||||||| |||||||||| | ||| ||||||||||||| Sbjct: 52456 attcttatacaaagaaaactctttcgcttcactttgtctc 52495
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 781 bits (394), Expect = 0.0 Identities = 581/640 (90%), Gaps = 15/640 (2%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 52399 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 52458 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 52459 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagactg 52518 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 52519 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 52578 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52579 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 52638 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct: 52639 cactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgcta 52698 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 52699 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 52758 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| Sbjct: 52759 taatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatcca 52817 Query: 419 gaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaa--------a 470 ||||||||||||||||||||||||||||||||||| ||||| |||||| || | Sbjct: 52818 gaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaagga 52877 Query: 471 gcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatgg 530 ||||||| ||||||||||||||| | |||| | ||||| |||| ||||||||||||| Sbjct: 52878 gcgcttactttagcctttgtttcttttgtgatatgtcttccttaaggattcatccaatgt 52937 Query: 531 aatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatcta 590 |||||| ||| | ||||||| ||||||| ||||||||||||||| || |||| ||| Sbjct: 52938 aatccccacttgccttctttttgatttcccttctatttagatatg----atatagaccta 52993 Query: 591 attcttatataaagaaaactttatcgtttcactttgtctc 630 ||||||||| |||||||||| | ||| ||||||||||||| Sbjct: 52994 attcttatacaaagaaaactctttcgcttcactttgtctc 53033
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 777 bits (392), Expect = 0.0 Identities = 578/633 (91%), Gaps = 9/633 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 44537 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 44478 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 44477 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 44418 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 44417 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 44358 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44357 accaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcctt 44299 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgc-caaaataggaataaggcttgct 298 ||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 44298 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaataggaataaggcttgct 44239 Query: 299 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccca 357 ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct: 44238 attattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccca 44179 Query: 358 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 417 ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | | Sbjct: 44178 ttaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttttac 44120 Query: 418 agaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctta 477 |||| |||||| ||||||||||||||||||| ||| |||| |||||| |||| ||||| Sbjct: 44119 agaatttctcttttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctta 44060 Query: 478 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 537 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 44059 gtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcccg 44000 Query: 538 actccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctta 597 |||||||||||||| ||||||| |||||||||| ||||| || ||| ||||||||| Sbjct: 43999 actccctttctttttgatttcctttctatttaggtatgg----tggagacataattctta 43944 Query: 598 tataaagaaaactttatcgtttcactttgtctc 630 || ||| |||||| | ||| ||||||||||||| Sbjct: 43943 tagaaacaaaactctctcgcttcactttgtctc 43911
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 747 bits (377), Expect = 0.0 Identities = 574/634 (90%), Gaps = 13/634 (2%) Strand = Plus / Minus Query: 5 ttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgat 63 |||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||| Sbjct: 12589470 ttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagcttcgat 12589411 Query: 64 aaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttc 123 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 12589410 aaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccgtttc 12589351 Query: 124 cacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtaccca 183 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 12589350 cacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgtaacca 12589291 Query: 184 agcc----cctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12589290 agcctcctccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 12589231 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgc--caaaataggaataaggcttgc 297 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 12589230 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaaataggaataaggcttgc 12589171 Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 356 |||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 12589170 tattattagaaatgcccaaaaaatatcatattcatgaagcagaaacataaatgtactccc 12589111 Query: 357 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 416 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 12589110 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 12589052 Query: 417 cagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctt 476 ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||| Sbjct: 12589051 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 12588992 Query: 477 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 536 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 12588991 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcct 12588932 Query: 537 aactccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctt 596 |||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||| Sbjct: 12588931 gactccctttctttttgatttcctttctatttaggtatgg----tggagacataattctt 12588876 Query: 597 atataaagaaaactttatcgtttcactttgtctc 630 ||| ||| |||||| | ||| ||||||||||||| Sbjct: 12588875 atagaaacaaaactctctcgcttcactttgtctc 12588842
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 747 bits (377), Expect = 0.0 Identities = 574/634 (90%), Gaps = 13/634 (2%) Strand = Plus / Minus Query: 5 ttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgat 63 |||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||| Sbjct: 71783 ttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagcttcgat 71724 Query: 64 aaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttc 123 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 71723 aaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccgtttc 71664 Query: 124 cacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtaccca 183 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 71663 cacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgtaacca 71604 Query: 184 agcc----cctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71603 agcctcctccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 71544 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgc--caaaataggaataaggcttgc 297 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 71543 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaaataggaataaggcttgc 71484 Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 356 |||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 71483 tattattagaaatgcccaaaaaatatcatattcatgaagcagaaacataaatgtactccc 71424 Query: 357 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 416 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 71423 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 71365 Query: 417 cagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctt 476 ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||| Sbjct: 71364 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 71305 Query: 477 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 536 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 71304 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcct 71245 Query: 537 aactccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctt 596 |||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||| Sbjct: 71244 gactccctttctttttgatttcctttctatttaggtatgg----tggagacataattctt 71189 Query: 597 atataaagaaaactttatcgtttcactttgtctc 630 ||| ||| |||||| | ||| ||||||||||||| Sbjct: 71188 atagaaacaaaactctctcgcttcactttgtctc 71155
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 712 bits (359), Expect = 0.0 Identities = 530/584 (90%), Gaps = 6/584 (1%) Strand = Plus / Plus Query: 48 aaatcaaagcttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggt 107 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 77624 aaatgaaagcttcgataaaaacggatatacccaatacgtcgaaactcattgcccaaaggt 77683 Query: 108 atagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgta 167 | |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 77684 agagaaagaccgtttcgacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgta 77743 Query: 168 ttcggaattgtacccaagcccctcccatgggttctatacccgattcataactagaaagct 227 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 77744 ttcggaattgtaaccaagccccccccatgggttctatacccgattcataactagaaagct 77803 Query: 228 tctctggtccttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaa 287 ||||||||||||||| |||||| |||||||| |||||||| ||||||| ||||||| || Sbjct: 77804 tctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaatagaaa 77863 Query: 288 taaggcttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-a 346 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct: 77864 taaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataa 77923 Query: 347 atgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattg 406 |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| Sbjct: 77924 atgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattg 77982 Query: 407 tcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaac 466 ||||||||| ||||| |||||||||||||| ||||||||||| ||| |||| |||||| Sbjct: 77983 tcaatttatacagaatttctctcttttccttggtgaaacaaggatcggtttttctcaaac 78042 Query: 467 aaaagcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatcca 526 |||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct: 78043 caaagggcttagtttagcctttgtttcctctttgccacgtcttctttaaagattcatcca 78102 Query: 527 atggaatcccaactccctttcttttggatttccattctatttagatatggtgtatgtaga 586 || ||||||| |||||||||||||| ||||||| |||||||||| ||||| || ||| Sbjct: 78103 atagaatcccgactccctttctttttgatttcctttctatttaggtatgg----tggaga 78158 Query: 587 tctaattcttatataaagaaaactttatcgtttcactttgtctc 630 ||||||||||| ||| |||||| | ||| ||||||||||||| Sbjct: 78159 cataattcttatagaaacaaaactctctcgcttcactttgtctc 78202
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 712 bits (359), Expect = 0.0 Identities = 530/584 (90%), Gaps = 6/584 (1%) Strand = Plus / Plus Query: 48 aaatcaaagcttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggt 107 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 23634943 aaatgaaagcttcgataaaaacggatatacccaatacgtcgaaactcattgcccaaaggt 23635002 Query: 108 atagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgta 167 | |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 23635003 agagaaagaccgtttcgacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgta 23635062 Query: 168 ttcggaattgtacccaagcccctcccatgggttctatacccgattcataactagaaagct 227 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 23635063 ttcggaattgtaaccaagccccccccatgggttctatacccgattcataactagaaagct 23635122 Query: 228 tctctggtccttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaa 287 ||||||||||||||| |||||| |||||||| |||||||| ||||||| ||||||| || Sbjct: 23635123 tctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaatagaaa 23635182 Query: 288 taaggcttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-a 346 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct: 23635183 taaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataa 23635242 Query: 347 atgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattg 406 |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| Sbjct: 23635243 atgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattg 23635301 Query: 407 tcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaac 466 ||||||||| ||||| |||||||||||||| ||||||||||| ||| |||| |||||| Sbjct: 23635302 tcaatttatacagaatttctctcttttccttggtgaaacaaggatcggtttttctcaaac 23635361 Query: 467 aaaagcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatcca 526 |||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct: 23635362 caaagggcttagtttagcctttgtttcctctttgccacgtcttctttaaagattcatcca 23635421 Query: 527 atggaatcccaactccctttcttttggatttccattctatttagatatggtgtatgtaga 586 || ||||||| |||||||||||||| ||||||| |||||||||| ||||| || ||| Sbjct: 23635422 atagaatcccgactccctttctttttgatttcctttctatttaggtatgg----tggaga 23635477 Query: 587 tctaattcttatataaagaaaactttatcgtttcactttgtctc 630 ||||||||||| ||| |||||| | ||| ||||||||||||| Sbjct: 23635478 cataattcttatagaaacaaaactctctcgcttcactttgtctc 23635521 Score = 636 bits (321), Expect = e-179 Identities = 452/489 (92%), Gaps = 5/489 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 14047935 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 14047994 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 14047995 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 14048054 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 14048055 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattgta 14048114 Query: 180 cccaag-cccctcccatgggttctatacccgattcataactagaaagcttctctggtcct 238 ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14048115 accaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtcct 14048174 Query: 239 tcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 297 |||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 14048175 tcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 14048234 Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 356 |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 14048235 tattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactccc 14048294 Query: 357 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 416 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 14048295 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 14048353 Query: 417 cagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctt 476 ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||| Sbjct: 14048354 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 14048413 Query: 477 agtttagcc 485 ||||||||| Sbjct: 14048414 agtttagcc 14048422 Score = 632 bits (319), Expect = e-178 Identities = 453/492 (92%), Gaps = 8/492 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 9749023 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 9748964 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 9748963 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 9748904 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 9748903 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 9748844 Query: 180 cccaag----cccctcccatgggttctatacccgattcataactagaaagcttctctggt 235 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9748843 accaagccccccccccccatgggttctatacccgattcataactagaaagcttctctggt 9748784 Query: 236 ccttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggct 294 ||||||| |||||| || |||||| |||||||| ||||||| ||||||||||||||||| Sbjct: 9748783 ccttcacaaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggct 9748724 Query: 295 tgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtact 353 ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| Sbjct: 9748723 tgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtact 9748664 Query: 354 cccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaattt 413 |||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||| Sbjct: 9748663 cccattaatgtggaatagttggaac-tgaattagtcaattcaagtcagcattgtcaattt 9748605 Query: 414 atccagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcg 473 || ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| | Sbjct: 9748604 atacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaaggg 9748545 Query: 474 cttagtttagcc 485 |||||||||||| Sbjct: 9748544 cttagtttagcc 9748533
>gb|AY243565.1| Hordeum vulgare chloroplast Ndh complex operon, complete sequence Length = 1778 Score = 686 bits (346), Expect = 0.0 Identities = 356/358 (99%), Gaps = 1/358 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 ctccttttcgccatgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 303 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 243 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 183 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 123 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 63 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataatgtactccca 357 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 62 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataatgtactccca 5
>emb|X17438.1|CHZMNPOO Maize chloroplast ndhC, psbG genes for NDH-C, PSII-G and ORF159 Length = 1933 Score = 654 bits (330), Expect = 0.0 Identities = 410/433 (94%), Gaps = 3/433 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 432 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 373 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 372 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagactg 313 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 312 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 253 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 252 accaagccccccccatgggttctatacccgantcataactagaaagcttctctggtcctt 193 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| Sbjct: 192 cactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgcta 133 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 132 ttattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccat 73 Query: 359 taatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcca 418 |||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| Sbjct: 72 taatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatcca 14 Query: 419 gaacttctctctt 431 ||||||||||||| Sbjct: 13 gaacttctctctt 1
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 636 bits (321), Expect = e-179 Identities = 452/489 (92%), Gaps = 5/489 (1%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 161815 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 161874 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 161875 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 161934 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 161935 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattgta 161994 Query: 180 cccaag-cccctcccatgggttctatacccgattcataactagaaagcttctctggtcct 238 ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 161995 accaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtcct 162054 Query: 239 tcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 297 |||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 162055 tcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 162114 Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 356 |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 162115 tattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactccc 162174 Query: 357 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 416 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 162175 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 162233 Query: 417 cagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctt 476 ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||| Sbjct: 162234 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 162293 Query: 477 agtttagcc 485 ||||||||| Sbjct: 162294 agtttagcc 162302
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08, complete sequence Length = 141899 Score = 636 bits (321), Expect = e-179 Identities = 452/489 (92%), Gaps = 5/489 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 124957 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 124898 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 124897 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 124838 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 124837 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattgta 124778 Query: 180 cccaag-cccctcccatgggttctatacccgattcataactagaaagcttctctggtcct 238 ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124777 accaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtcct 124718 Query: 239 tcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 297 |||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 124717 tcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 124658 Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 356 |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 124657 tattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactccc 124598 Query: 357 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 416 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 124597 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 124539 Query: 417 cagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctt 476 ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||| Sbjct: 124538 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 124479 Query: 477 agtttagcc 485 ||||||||| Sbjct: 124478 agtttagcc 124470
>dbj|AK069240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010F18, full insert sequence Length = 3557 Score = 636 bits (321), Expect = e-179 Identities = 452/489 (92%), Gaps = 5/489 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 1806 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 1747 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 1746 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 1687 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 1686 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattgta 1627 Query: 180 cccaag-cccctcccatgggttctatacccgattcataactagaaagcttctctggtcct 238 ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 accaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtcct 1567 Query: 239 tcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 297 |||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 1566 tcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 1507 Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 356 |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 1506 tattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactccc 1447 Query: 357 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 416 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 1446 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 1388 Query: 417 cagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctt 476 ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| |||| Sbjct: 1387 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 1328 Query: 477 agtttagcc 485 ||||||||| Sbjct: 1327 agtttagcc 1319
>emb|AL663002.3|OSJN00199 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026I12, complete sequence Length = 128574 Score = 632 bits (319), Expect = e-178 Identities = 453/492 (92%), Gaps = 8/492 (1%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 81229 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 81170 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 81169 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 81110 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 81109 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 81050 Query: 180 cccaag----cccctcccatgggttctatacccgattcataactagaaagcttctctggt 235 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81049 accaagccccccccccccatgggttctatacccgattcataactagaaagcttctctggt 80990 Query: 236 ccttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggct 294 ||||||| |||||| || |||||| |||||||| ||||||| ||||||||||||||||| Sbjct: 80989 ccttcacaaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggct 80930 Query: 295 tgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtact 353 ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| Sbjct: 80929 tgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtact 80870 Query: 354 cccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaattt 413 |||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||| Sbjct: 80869 cccattaatgtggaatagttggaac-tgaattagtcaattcaagtcagcattgtcaattt 80811 Query: 414 atccagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcg 473 || ||||| |||||||||||||||||||||||||| ||| |||| |||||| |||| | Sbjct: 80810 atacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaaggg 80751 Query: 474 cttagtttagcc 485 |||||||||||| Sbjct: 80750 cttagtttagcc 80739
>ref|NM_197447.1| Oryza sativa (japonica cultivar-group) NADH dehydrogenase ND3 (OSJNBb0005J14.29), mRNA Length = 363 Score = 527 bits (266), Expect = e-146 Identities = 327/346 (94%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 346 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 287 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 286 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 227 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 226 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 167 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 107 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| Sbjct: 106 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgcta 47 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 46 ttattagaaatgcccaaaaaatatcatattcgtgaagcagaaacat 1
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 402 bits (203), Expect = e-109 Identities = 246/259 (94%), Gaps = 1/259 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 33553316 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 33553257 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 33553256 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 33553197 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 33553196 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 33553137 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33553136 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 33553077 Query: 240 cactaaccggggctaaaag 258 ||| |||||| |||||||| Sbjct: 33553076 cacgaaccggagctaaaag 33553058 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 33512946 tagcgtattcggaattgtaaccaagc 33512971 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 33512872 aaacggaaacgcccaatacatcgaaactcattaccca 33512908 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 2523840 aaacggaaacgcccaatacatcgaaactcattaccca 2523876 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 aattagtcaattcaattcagcatt 405 ||||||||||||||| |||||||| Sbjct: 19318135 aattagtcaattcaagtcagcatt 19318158
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 402 bits (203), Expect = e-109 Identities = 246/259 (94%), Gaps = 1/259 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct: 98513 ctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagctt 98454 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 98453 cgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccg 98394 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 98393 tttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgta 98334 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98333 accaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 98274 Query: 240 cactaaccggggctaaaag 258 ||| |||||| |||||||| Sbjct: 98273 cacgaaccggagctaaaag 98255 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 58143 tagcgtattcggaattgtaaccaagc 58168 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 58069 aaacggaaacgcccaatacatcgaaactcattaccca 58105
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 361 bits (182), Expect = 2e-96 Identities = 296/334 (88%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| |||| |||||||||||||||||| |||||||| ||||| || || Sbjct: 52199 tgcataaactaaaccaacaattaagataagcacgaaaattaaagcttctataaatacaga 52258 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||| ||||| ||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52259 tacacctaatacatcgaaactcattgcccatggataaagaaaaactgtttcaacatcaaa 52318 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| || Sbjct: 52319 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcattgcc 52378 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||||||||||||||| || |||||||| |||| |||| |||||| Sbjct: 52379 cattggttctatacccgattcataactagagagtttctctggccctttgctaatcggggc 52438 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| ||| ||||| |||||||||||||||||||||| |||| |||||||||||||| Sbjct: 52439 taaaaccccggaaatgaaaaatgccaaaataggaataagacttgatattattagaaatgc 52498 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||||||||||||||||||||||||||| Sbjct: 52499 ccaaaaaatatcatattcgtaaagcagaaacata 52532
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 347 bits (175), Expect = 3e-92 Identities = 305/347 (87%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| |||||||||| |||| |||| || ||||||||||||||| ||||||| Sbjct: 54163 ctccttttcgccatgcataaactgaaccaacaattaggataagcacgaaaattaaagctt 54222 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| ||||||||||||||||| ||||||||||||||||| || || ||||| || | Sbjct: 54223 ctataaatacggatacacccaatacatcgaaactcattgcccatggataaagaaaaaccg 54282 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| ||||||||||| |||||||| || |||||||||||||| || ||||| ||||||| Sbjct: 54283 tttcaacatcaaaaacgacaaaaactagagcaaacatataataacggattcgaaattgta 54342 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 54343 accaagcatcgcccattggttctatacccgattcataactagaaagtttctctggtcctt 54402 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||| ||| ||||||| || ||||| ||||||||||||| ||||||| |||| || Sbjct: 54403 tactaatcggagctaaaactccggaaataaaaaatgccaaaatgggaataacacttgata 54462 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct: 54463 ttattagaaaagcccagaaaatatcatattcgtaaagcagaaacata 54509
>gb|AY936342.1| Evolvulus glomeratus NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1744 Score = 345 bits (174), Expect = 1e-91 Identities = 304/346 (87%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||| ||||||| ||||||||||||||| ||| |||||||||||| ||||| ||||||| Sbjct: 346 ctccctttcgccatgcataaactaaaccaccaattaagataagcacaaaaatgaaagctt 287 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 ||| ||| || |||||||||||||| ||||||||||||||||| ||||| ||||| || | Sbjct: 286 cgagaaatacagatacacccaatacatcgaaactcattgcccatgggtaaagaaaaaccg 227 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||| Sbjct: 226 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgta 167 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| ||||||||||||||||| |||||||| || | Sbjct: 166 accaagcatcgcccattggttctatacctgattcataactagaaagtttctctggcccct 107 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| ||||||||||| ||| |||||| |||| | |||||||||||||||||| | || Sbjct: 106 tgctaatcggggctaaaaccccggaaatcaaaaaagtcaaaataggaataaggctggata 47 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 46 ttattagaaatgcccaaaaaatatcatattcgtaaagtagaaacat 1
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||| Sbjct: 53848 ctccttttcgccatgcataaactgaaccaacaactgggataagcacgaaaatcaaagctt 53907 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| ||| |||| ||||||| || ||||||| ||||| || || |||||||| | Sbjct: 53908 ctataaatacgtatacgcccaatatatcaaaactcacggcccatggataaagaaagaccg 53967 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||| Sbjct: 53968 tttcgacatcaaaaacaacaaaaacgagagcaaacatgtaatagcggattcgaaattgta 54027 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | || || ||||||||||||||||||||||| || |||||||||||||||| Sbjct: 54028 tccaagcatcccctattggttctatacccgattcataactggagagcttctctggtcctt 54087 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||||| |||||||||| ||| ||||| |||||||||||||||||||| |||| || Sbjct: 54088 cactaattggggctaaaaccccggaaattagaaatgccaaaataggaataacacttgata 54147 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata-atgtactcccat 358 | |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| || Sbjct: 54148 tcattagaaatgcccagaaaatatcatattcgtaaagcagaaacatagatgtactcctat 54207 Query: 359 taatgtggaata 370 ||||| ||||| Sbjct: 54208 gaatgtagaata 54219
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||| ||||||| |||||||||| |||| |||| | ||||||||||||||| ||||||| Sbjct: 50996 ctccctttcgccatgcataaactgaaccaacaattgggataagcacgaaaattaaagctt 51055 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| || |||||||||| ||| ||||||||||||||||| || || |||||||| | Sbjct: 51056 ctataaatacagatacacccagtacatcgaaactcattgcccatggataaagaaagaccg 51115 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||| |||||||| ||||||||||||| Sbjct: 51116 tttcaacatcaaaaacaacaaaaactagagcaaacatgtaatagcggattcggaattgta 51175 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| |||||||||||||| |||||||||||||||| Sbjct: 51176 accaagcatcccccattggttctatacctgattcataactagagagcttctctggtcctt 51235 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| || ||||||||||| || ||||| |||||||||||||||||| | |||| || Sbjct: 51236 cacgaatcggggctaaaactccggaaattagaaatgccaaaataggaatgacacttgata 51295 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata-atgtactcccat 358 |||||||||||| ||| |||||||||||||||| ||||||||||||| ||| ||||| || Sbjct: 51296 ttattagaaatgcccagaaaatatcatattcgtgaagcagaaacatagatgcactcctat 51355 Query: 359 taatgtggaata 370 ||||||||||| Sbjct: 51356 gaatgtggaata 51367
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 339 bits (171), Expect = 7e-90 Identities = 304/347 (87%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| |||| || ||||||||||||||| ||||||| Sbjct: 54376 ctccttttcgccatgcataaactaaaccaacaattaggataagcacgaaaattaaagctt 54435 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| |||||||| |||||||| ||||||||||||||||| || || ||||| || | Sbjct: 54436 ctataaatacggatacccccaatacatcgaaactcattgcccatggataaagaaaaaccg 54495 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||| Sbjct: 54496 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgta 54555 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| ||||||||||| ||||| |||||||| |||| Sbjct: 54556 accaagcatcgcccattggttctatacctgattcataactcgaaagtttctctggccctt 54615 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| ||||||||||| || ||||| |||||||||||||||||||| |||| || Sbjct: 54616 tgctaatcggggctaaaattccggaaattmgaaatgccaaaataggaataacacttgata 54675 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 54676 ttattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 54722
>gb|AY936338.1| Jacquemontia tamnifolia NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1706 Score = 331 bits (167), Expect = 2e-87 Identities = 290/331 (87%) Strand = Plus / Minus Query: 15 cataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacggata 74 ||||||||||||| ||| |||||||||||| |||||||||||||| ||||| || |||| Sbjct: 331 cataaactaaaccaccaattaagataagcacaaaaatcaaagcttctataaatacagata 272 Query: 75 cacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaaaa 134 ||||||||| ||||||||||||||||| || || ||||| || ||||| |||||||||| Sbjct: 271 gacccaatacatcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaaaa 212 Query: 135 caacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctccca 194 ||||||||||||| |||||||||||||| || ||||| ||||||| |||||| | |||| Sbjct: 211 caacaaaaacgagagcaaacatataataacggattcgaaattgtaaccaagcatcgccca 152 Query: 195 tgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggcta 254 ||||||| ||||| ||||||||||||||||| |||||||| |||| |||| |||||||| Sbjct: 151 tgggttcgataccggattcataactagaaagtttctctgggcctttgctaatcggggcta 92 Query: 255 aaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtcc 314 ||| || |||||| |||| ||||||||||||| ||||| | |||||||||||||| || Sbjct: 91 aaacgccggaaatcaaaaaagccaaaataggaaacaggctggatattattagaaatgccc 32 Query: 315 aaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||||||||||||| |||||||| Sbjct: 31 aaaaaatatcatattcgtaaagtagaaacat 1
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 331 bits (167), Expect = 2e-87 Identities = 293/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 51502 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51561 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51562 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51621 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51622 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51681 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| |||||| Sbjct: 51682 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 51741 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 51742 taacactccggaaatgaaaaatgccaaaataggaacaaggattgatattattagaaatgc 51801 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 51802 ccaaaaaaaatcatattcgtaaagcagaaacataa 51836
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 331 bits (167), Expect = 2e-87 Identities = 293/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 51421 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51480 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51481 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51540 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51541 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51600 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| |||||||| |||| |||| |||||| Sbjct: 51601 cattggttctatacccgactcataagtagaaagtttctctggccctttgctaatcggggc 51660 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 51661 taacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaatgc 51720 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 51721 ccaaaaaaaatcatattcgtaaagcagaaacataa 51755
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 331 bits (167), Expect = 2e-87 Identities = 293/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 51417 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51476 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51477 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51536 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51537 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51596 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| |||||||| |||| |||| |||||| Sbjct: 51597 cattggttctatacccgactcataagtagaaagtttctctggccctttgctaatcggggc 51656 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 51657 taacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaatgc 51716 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 51717 ccaaaaaaaatcatattcgtaaagcagaaacataa 51751
>gb|AY936340.1| Falkia repens NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1715 Score = 329 bits (166), Expect = 6e-87 Identities = 302/346 (87%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||| Sbjct: 346 ctccctttcgccatgcataaactaaaccaccaattaagataagcacgaaaataaaagctt 287 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | | ||| || |||||||||||||| ||||||||||||||||| || || ||||| || | Sbjct: 286 ctagaaatacagatacacccaatacatcgaaactcattgcccatggataaagaaaaaccg 227 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || |||| ||||||| Sbjct: 226 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgta 167 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct: 166 accaagcatcgcccattggttctatacctgattcataactagaaagtttctctggccctt 107 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| ||||||||||| ||| ||||| |||| |||||||||||||||||||| | || Sbjct: 106 tgttaatcggggctaaaaccccggaaataaaaaaagccaaaataggaataaggctggata 47 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 46 ttattagaaatgcccaaaaaatatcatattcgtaaagtagaaacat 1
>gb|AY936336.1| Operculina aequisepala NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1721 Score = 329 bits (166), Expect = 6e-87 Identities = 302/346 (87%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||| Sbjct: 346 ctccctttcgccatgcataaactaaaccaccaattaagataagcacgaaaatgaaagctt 287 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | | ||| || |||||||||||||| ||||||||||||||||| || || ||||| || | Sbjct: 286 ctagaaatacagatacacccaatacatcgaaactcattgcccatggataaagaaaaaccg 227 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||| Sbjct: 226 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgta 167 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct: 166 accaagcatcgcccataggttctatacctgattcataactagaaagtttctctggccctt 107 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| ||||||||||| ||| |||| |||| |||||||||||||||||||| | || Sbjct: 106 tgctaatcggggctaaaaccccggaaagaaaaaaagccaaaataggaataaggctggata 47 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct: 46 ttattagaaatgcccaaaaaagatcatattcgtaaagtagaaacat 1
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 329 bits (166), Expect = 6e-87 Identities = 292/334 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 |||||||||| |||| |||| || |||||||||||||||||||||||| | ||| ||||| Sbjct: 50654 tgcataaactgaaccaacaattaggataagcacgaaaatcaaagcttctagaaatacgga 50713 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||| ||||||||||||||||| || || |||||||| ||||| |||||||| Sbjct: 50714 tacacccaatacatcgaaactcattgcccatggataaagaaagaccgtttcaacatcaaa 50773 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| | |||||||||||||| || |||||||||||||||||||| | || Sbjct: 50774 aacaacaaaaactaaagcaaacatataatatcggattcggaattgtacccaagcatcccc 50833 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 || ||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 50834 tattggttctatacccgattcataactagaaagcttctcgggtccttccctcgttggggc 50893 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || ||||| ||||||| ||||||||||||| |||| ||||| |||||||| Sbjct: 50894 taaaactccggaaattaaaaatgctaaaataggaataacacttgatattagtagaaatgc 50953 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacata 346 ||| |||||||||||||||| ||||||||||||| Sbjct: 50954 ccagaaaatatcatattcgtgaagcagaaacata 50987 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 attctatttagatatggtgta 580 ||||||||||||||||||||| Sbjct: 51170 attctatttagatatggtgta 51190
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 323 bits (163), Expect = 4e-85 Identities = 292/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 52341 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 52400 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52401 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52460 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 52461 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 52520 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| |||||| Sbjct: 52521 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 52580 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 52581 taacactccggaaattaaaaatgccaaaataggaacaaggatagatattattagaaatgc 52640 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 52641 ccaaaaaaaatcatattcgtaaagcagaaacataa 52675
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 323 bits (163), Expect = 4e-85 Identities = 302/347 (87%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||| ||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||||| Sbjct: 49533 ctccctttcgccatgcataaactaaaccaacaattaagataagcacaaaaattaaagctt 49592 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | | ||| || |||||||| ||||| ||||||||||||||||| || || ||||| || | Sbjct: 49593 ctacaaatacagatacacctaatacatcgaaactcattgcccatggataaagaaaaaccg 49652 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 ||||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||| Sbjct: 49653 tttccacatcaaaaacaacaaaaacaagagcaaacatataatagcggattctaaattgta 49712 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | || || ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 49713 accaagcgtcacctattggttctatacctgattcataactagaaagtttctccggtcctt 49772 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| ||||||||||| || ||||| ||||| |||||||||||||||| |||| || Sbjct: 49773 tgctactcggggctaaaaatcccgaaatgaaaaataccaaaataggaataagacttgata 49832 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct: 49833 ttatcagaaatgcccaaaaaatatcatattcgtaaagcagaaacata 49879
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 323 bits (163), Expect = 4e-85 Identities = 292/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 51366 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51425 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51426 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51485 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51486 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51545 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| |||||| Sbjct: 51546 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 51605 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 51606 taacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaatgc 51665 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 51666 ccaaaaaaaatcatattcgtaaagcagaaacataa 51700
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 323 bits (163), Expect = 4e-85 Identities = 292/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 52339 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 52398 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52399 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52458 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 52459 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 52518 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| |||||| Sbjct: 52519 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 52578 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 52579 taacactccggaaattaaaaatgccaaaataggaacaaggatagatattattagaaatgc 52638 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 52639 ccaaaaaaaatcatattcgtaaagcagaaacataa 52673
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 323 bits (163), Expect = 4e-85 Identities = 292/335 (87%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||||||||||||| |||||||| ||||| || || Sbjct: 52289 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 52348 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52349 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52408 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 52409 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 52468 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| |||||| Sbjct: 52469 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 52528 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 52529 taacactccggaaattaaaaatgccaaaataggaacaaggatggatattattagaaatgc 52588 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 52589 ccaaaaaaaatcatattcgtaaagcagaaacataa 52623
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 321 bits (162), Expect = 2e-84 Identities = 317/366 (86%), Gaps = 2/366 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| |||||||||| |||| || | | ||||||||||||||| ||||||| Sbjct: 54850 ctccttttcgccatgcataaactgaaccaacgattgggataagcacgaaaattaaagctt 54909 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| |||||||| |||||||| ||||||||||| ||||| || || ||||| |||| Sbjct: 54910 ctataaatacggatacgcccaatacatcgaaactcatggcccatggataaagaaaaacgg 54969 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||| |||||||| ||||||||||||| Sbjct: 54970 tttcgacatcaaaaacaacaaaaactagggcaaacatgtaatagcggattcggaattgta 55029 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| |||||||||||||| | ||| |||||||||| Sbjct: 55030 tccaagcatcccccattggttctatacctgattcataactagagaccttttctggtcctt 55089 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||||| ||||||||||| || ||||| |||||||||||||||||||| |||| || Sbjct: 55090 gactaatcggggctaaaactccagaaattagaaatgccaaaataggaataacacttgata 55149 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata-atgtactcccat 358 | |||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||| || Sbjct: 55150 tcattagaaatgcccagaaaatatcatattcgtgaagcagaaacatagatgtactcctat 55209 Query: 359 taatgt 364 ||||| Sbjct: 55210 gaatgt 55215
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 315 bits (159), Expect = 1e-82 Identities = 301/347 (86%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||| ||||| | ||||||||||||||||||||| | ||||| Sbjct: 14158 ctccttttcgccatgcataaaccaaaccaagaactaagataagcacgaaaatgagagctt 14099 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| |||||||| ||||||| |||||||||| |||||| || || ||||| | || Sbjct: 14098 ctataaatacggatacccccaatatatcgaaactcagtgcccatggataaagaaaaatgg 14039 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| | |||||||||||||| |||||||| ||||||| Sbjct: 14038 tttcaacatcaaaaacaacaaaaactaaagcaaacatataataacgtattcgaaattgta 13979 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||||||||||||||| ||||| |||||||| ||| Sbjct: 13978 accaagcatcgcccattggttctatacccgattcataactcgaaagtttctctggcccta 13919 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| |||||||||||| || ||||| |||||||||||||||||||| |||| || Sbjct: 13918 tgctagtcggggctaaaagtccggaaattcgaaatgccaaaataggaataacacttgata 13859 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 13858 ttattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 13812
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 315 bits (159), Expect = 1e-82 Identities = 291/335 (86%) Strand = Plus / Minus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 |||||||||| |||| |||| || |||||||||||| || |||||||| ||||| ||||| Sbjct: 11072 tgcataaactgaaccaacaattaggataagcacgaatatgaaagcttctataaatacgga 11013 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 ||| || ||||| |||||||||||||||||||| || ||||| || ||||| |||||||| Sbjct: 11012 tacccctaatacatcgaaactcattgcccaaggataaagaaaaaccgtttcaacatcaaa 10953 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 ||||||||||| ||| |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 10952 aacaacaaaaatgagagcaaacatataataacggattcgaaattgtaaccaagcatcacc 10893 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 || |||||||| |||||||||||||||||||| ||||||||||| | |||| |||||| Sbjct: 10892 tattggttctattcccgattcataactagaaagtttctctggtcccttgctaatcggggc 10833 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || ||||| |||||||||||||||||||| |||| |||||||||||||| Sbjct: 10832 taaaattccagaaattagaaatgccaaaataggaataaaacttgatattattagaaatgc 10773 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||||||||||||||||||| |||||||||| Sbjct: 10772 ccaaaaaatatcatattcgtaaagaagaaacataa 10738
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 313 bits (158), Expect = 4e-82 Identities = 290/334 (86%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| |||| |||||||||||||||||| |||||||| | ||| || || Sbjct: 49925 tgcataaactaaaccaacaattaagataagcacgaaaattaaagcttctacaaatacaga 49984 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||| ||||| || |||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 49985 tacacctaatacatcaaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 50044 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || ||||||||||||||||| |||| ||||||| |||||| | || Sbjct: 50045 aacaacaaaaactagagcaaacatataatagcggattctaaattgtaaccaagcgtcgcc 50104 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 || ||||||||||||||||||||||||||||| ||||| ||||||| |||| ||| || Sbjct: 50105 tattggttctatacccgattcataactagaaagtttctccggtcctttgctaatcggagc 50164 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || ||||| ||||| |||||||||||||||| |||| ||| |||||||||| Sbjct: 50165 taaaaatcccgaaatgaaaaataccaaaataggaataagacttgatatgattagaaatgc 50224 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||||||||||| ||||||||||||||| Sbjct: 50225 ccaaaaaatatcatattcataaagcagaaacata 50258
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 313 bits (158), Expect = 4e-82 Identities = 319/370 (86%), Gaps = 2/370 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 52871 ctccttttcgccatgcataaactaaaccgacaattaggataagcacgaaaattaaagctt 52930 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| |||||||| || ||||| || |||||||||||||| || || ||||| || | Sbjct: 52931 ctataaagacggatacccctaatacatcaaaactcattgcccacggataaagaaaaactg 52990 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || |||| ||||||| Sbjct: 52991 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgta 53050 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||| | ||||| |||||||| |||||||||||||| ||||| |||||||| ||| Sbjct: 53051 cccaagcatcgcccattggttctattcccgattcataactcgaaagtttctctggctctt 53110 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| |||||||||| || ||||| |||||||||||||||||||| |||| || Sbjct: 53111 tgctaagaggggctaaaactccagaaattagaaatgccaaaataggaataacacttgata 53170 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| || Sbjct: 53171 ttattagaaatacccagaaaatatcatattcgtaaagcagaaacataaacgtactcctat 53230 Query: 359 taatgtggaa 368 ||||||||| Sbjct: 53231 caatgtggaa 53240
>gb|AY936344.1| Dinetus truncatus NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1710 Score = 313 bits (158), Expect = 4e-82 Identities = 300/346 (86%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||| Sbjct: 346 ctccctttcgccatgcataaactaaaccaccaattaagataagcacgaaaatgaaagctt 287 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | | ||| ||||||||||||||||| ||||||||||||||||| || || ||||| || | Sbjct: 286 ctagaaatacggatacacccaatacatcgaaactcattgcccatggataaagaaaaaccg 227 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| ||||||||||||||||| || || |||||||||||||| || |||| ||||||| Sbjct: 226 tttcaacatcaaaaacaacaaacactagagcaaacatataataacggattctaaattgta 167 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||| ||||||||||||||||| |||||||| || | Sbjct: 166 accaagcatcgcccatcggttctatacctgattcataactagaaagtttctctggcccct 107 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| ||||||||||| || |||||| |||| |||||||||||||||||| | | || Sbjct: 106 tgctaagcggggctaaaactccggaaatcaaaaaagccaaaataggaataaggatggata 47 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct: 46 ttattagaaatgcccaaaaaagatcatattcgtaaagtagaaacat 1
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 313 bits (158), Expect = 4e-82 Identities = 319/370 (86%), Gaps = 2/370 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 52845 ctccttttcgccatgcataaactaaaccgacaattaggataagcacgaaaattaaagctt 52904 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| |||||||| || ||||| || |||||||||||||| || || ||||| || | Sbjct: 52905 ctataaagacggatacccctaatacatcaaaactcattgcccacggataaagaaaaactg 52964 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || |||| ||||||| Sbjct: 52965 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgta 53024 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 ||||||| | ||||| |||||||| |||||||||||||| ||||| |||||||| ||| Sbjct: 53025 cccaagcatcgcccattggttctattcccgattcataactcgaaagtttctctggctctt 53084 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| |||||||||| || ||||| |||||||||||||||||||| |||| || Sbjct: 53085 tgctaagaggggctaaaactccagaaattagaaatgccaaaataggaataacacttgata 53144 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccat 358 ||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| || Sbjct: 53145 ttattagaaatacccagaaaatatcatattcgtaaagcagaaacataaacgtactcctat 53204 Query: 359 taatgtggaa 368 ||||||||| Sbjct: 53205 caatgtggaa 53214
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 313 bits (158), Expect = 4e-82 Identities = 290/334 (86%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| |||| |||||||||||||||||| |||||||| | ||| || || Sbjct: 49924 tgcataaactaaaccaacaattaagataagcacgaaaattaaagcttctacaaatacaga 49983 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||| ||||| || |||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 49984 tacacctaatacatcaaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 50043 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || ||||||||||||||||| |||| ||||||| |||||| | || Sbjct: 50044 aacaacaaaaactagagcaaacatataatagcggattctaaattgtaaccaagcgtcgcc 50103 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 || ||||||||||||||||||||||||||||| ||||| ||||||| |||| ||| || Sbjct: 50104 tattggttctatacccgattcataactagaaagtttctccggtcctttgctaatcggagc 50163 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || ||||| ||||| |||||||||||||||| |||| ||| |||||||||| Sbjct: 50164 taaaaatcccgaaatgaaaaataccaaaataggaataagacttgatatgattagaaatgc 50223 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||||||||||| ||||||||||||||| Sbjct: 50224 ccaaaaaatatcatattcataaagcagaaacata 50257
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 307 bits (155), Expect = 2e-80 Identities = 300/347 (86%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| |||||||||| |||| |||| || ||||||||||||||| ||||||| Sbjct: 53475 ctccttttcgccatgcataaactgaaccaacaattaggataagcacgaaaatgaaagctt 53534 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | || || |||| ||| |||||||| ||||||||||||||||| || || ||||| || | Sbjct: 53535 ctatgaatacgggtacccccaatacatcgaaactcattgcccatggataaagaaaaaccg 53594 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||| Sbjct: 53595 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgta 53654 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||||||||||||||||||||| || ||||| || | Sbjct: 53655 accaagcatcgcccattggttctatacccgattcataactagaaagtttttctggaccct 53714 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| ||||||||||| || ||||| ||||||||||||||||||| |||| || Sbjct: 53715 ttctaatcggggctaaaactccagaaattagaaatgccaaaataggaatagcacttgata 53774 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 53775 ttattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 53821
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 307 bits (155), Expect = 2e-80 Identities = 290/335 (86%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||| ||||||||||| |||||||| ||||| || || Sbjct: 51975 tgcataaactaaaccaataattaagatcagcacgaaaatgaaagcttctataaatacaga 52034 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52035 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52094 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || |||| ||||||| |||||| | || Sbjct: 52095 aacaacaaaaactagagcaaacatataataacggattctaaattgtaaccaagcatcgcc 52154 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| ||||| Sbjct: 52155 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaattggggc 52214 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 52215 taacactccggaaatgaaaaatgccaaaataggaacaaggattgatattattagaaatgc 52274 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 52275 ccaaaaaaaatcatattcgtaaagcagaaacataa 52309
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 307 bits (155), Expect = 2e-80 Identities = 290/335 (86%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | || |||||||| ||||||||| |||||||| ||||| || || Sbjct: 51508 tgcataaactaaaccaataattaagataaccacgaaaatgaaagcttctataaatacaga 51567 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 ||||||||||| |||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51568 tacacccaataggtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51627 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| | |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51628 aacaacaaaaactacagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51687 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||||||||| |||||| ||||||| ||||| || |||| |||| |||||| Sbjct: 51688 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 51747 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||| | || ||||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 51748 taacactccggaaatgaaaaatgccaaaataggaagaaggattgatattattagaaatgc 51807 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| |||||||||||||||||||||||||| Sbjct: 51808 ccaaaaaaaatcatattcgtaaagcagaaacataa 51842
>gb|U27653.1|LLU27653 Lupinus luteus NADH-plastoquinone oxidoreductase (ndhC) gene, chloroplast gene encoding chloroplast protein, complete cds Length = 363 Score = 303 bits (153), Expect = 4e-79 Identities = 288/333 (86%) Strand = Plus / Minus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| |||| || |||||||||||||||||||||||| ||||| ||||| Sbjct: 333 tgcataaactaaaccaacaattaggataagcacgaaaatcaaagcttctataaatacgga 274 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 ||| |||||||| ||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 273 tacccccaatacatcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 214 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || |||| ||||||| |||||| | || Sbjct: 213 aacaacaaaaactagagcaaacatataataacggattctaaattgtaaccaagcatcgcc 154 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||| |||||||||||||| || || ||||||||||| | |||| ||||| Sbjct: 153 cattggttctattcccgattcataactcgagagtttctctggtcccttgctaattggggc 94 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || ||||| ||||||| ||||| ||||||||||| | ||||||||||||| Sbjct: 93 taaaattccagaaattaaaaatgctaaaatcggaataaggctcgagattattagaaatgc 34 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacat 345 |||||||||||||||||||||||||| |||||| Sbjct: 33 ccaaaaaatatcatattcgtaaagcaaaaacat 1
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 299 bits (151), Expect = 6e-78 Identities = 299/347 (86%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| |||| || ||||||||||||||| ||||||| Sbjct: 48999 ctccttttcgccatgcataaactaaaccaacaattaggataagcacgaaaattaaagctt 49058 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | ||||| |||||||||||||||| ||||||||||||||||| || || ||||| || | Sbjct: 49059 ctataaatacggatacacccaatatatcgaaactcattgcccatggataaagaaaaaccg 49118 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||| Sbjct: 49119 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgta 49178 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | ||||| ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 49179 accaagcatcccccataggttctatacccgattcgtaactagaaagtttctcgggtcctt 49238 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| ||| ||||||| || |||| |||||| ||||||||||||| |||| || Sbjct: 49239 tgctaatcggtgctaaaattccggaaaatagaaatgctaaaataggaataacacttgata 49298 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||||| ||||| ||| |||||||||||||| ||||| ||||||||| Sbjct: 49299 ttattaaaaatgcccagaaaatatcatattcataaagtagaaacata 49345
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 297 bits (150), Expect = 2e-77 Identities = 304/354 (85%), Gaps = 1/354 (0%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| |||| || |||||| ||||| || |||||||| ||||| ||||| Sbjct: 113165 tgcataaactaaaccaacaattaggataaggacgaagatgaaagcttctataaatacgga 113224 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 ||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 113225 tacccccaatacatcaaaactcattgcccatgggtaaagaaagactgtttcaacatcaaa 113284 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||| | ||||||| |||||| | || Sbjct: 113285 aacaacaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatcgcc 113344 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||| || ||||||||||||||||| || ||||| |||| |||| || || Sbjct: 113345 catcggttctatcccagattcataactagaaagtttttctggcccttttctaattggagc 113404 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || |||||| |||||||||||||||||||| | | | ||||||||||||||| Sbjct: 113405 taaaattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgt 113464 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 365 |||||||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 113465 ccaaaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 113518
>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete sequence Length = 116154 Score = 281 bits (142), Expect = 1e-72 Identities = 302/354 (85%), Gaps = 1/354 (0%) Strand = Plus / Minus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| |||| || |||||| ||||| || |||||||| ||||| ||||| Sbjct: 83488 tgcataaactaaaccaacaattaggataaggacgaagatgaaagcttctataaatacgga 83429 Query: 73 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 132 ||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 83428 tacccccaatacatcaaaactcattgcccatgggtaaagaaagactgtttcaacatcaaa 83369 Query: 133 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 192 |||||||||||| || |||||||||||||| || ||| | ||||||| |||||| | || Sbjct: 83368 aacaacaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatcgcc 83309 Query: 193 catgggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggc 252 ||| |||||||| | ||||||||||| ||||| || ||||| |||| |||| || || Sbjct: 83308 catcggttctatcctagattcataacttgaaagtttttctggcccttttctaattggagc 83249 Query: 253 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 312 ||||| || |||||| |||||||||||||||||||| | | | ||||||||||||||| Sbjct: 83248 taaaattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgt 83189 Query: 313 ccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 365 |||||||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 83188 ccaaaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 83135
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 268 bits (135), Expect = 2e-68 Identities = 282/331 (85%) Strand = Plus / Minus Query: 17 taaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacggataca 76 |||||| |||| |||| || ||||||||| || ||||||||||| ||||| ||||||| Sbjct: 11027 taaactgaaccaacaattaggataagcacaaagatcaaagcttctataaatacggatatc 10968 Query: 77 cccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaaaaca 136 |||||||| || |||||||||||||| || || ||||| || ||||| |||||||||||| Sbjct: 10967 cccaatacatcaaaactcattgcccatggataaagaaaaaccgtttcaacatcaaaaaca 10908 Query: 137 acaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcccatg 196 |||||||| || |||||||||||||| || ||| | ||||||| |||||| ||||||| Sbjct: 10907 acaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatctcccatt 10848 Query: 197 ggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggctaaa 256 |||||||| |||||||||||||||||||| |||||||| |||| ||| |||||| ||| Sbjct: 10847 ggttctattcccgattcataactagaaagtttctctggccctttgttaatcggggccaaa 10788 Query: 257 agccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtccaa 316 | || ||||| | |||||||||||| ||||||| | | | |||||||||||||| |||| Sbjct: 10787 aagccagaaattgtaaatgccaaaatcggaataaagatcgatattattagaaatgcccaa 10728 Query: 317 aaaatatcatattcgtaaagcagaaacataa 347 |||||||||||||| ||||||| |||||||| Sbjct: 10727 aaaatatcatattcataaagcaaaaacataa 10697
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 252 bits (127), Expect = 1e-63 Identities = 293/347 (84%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| | || || ||||||||||||||| ||||||| Sbjct: 49080 ctccttttcgccatgcataaactaaaccaagaattaggataagcacgaaaatgaaagctt 49139 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | |||||| ||||||| || | ||| ||||||||||||||||| || || ||||| |||| Sbjct: 49140 ctataaaagcggatacccctagtacatcgaaactcattgcccacggatacagaaaaacgg 49199 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || |||| ||||||| Sbjct: 49200 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgta 49259 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | || || ||||||||||| ||||||||||||||||| ||||| || || | Sbjct: 49260 accaagcatccccgatcggttctatacctgattcataactagaaagtttctccggcccct 49319 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 ||| || | ||||| ||| ||||| ||||||||||| ||||||| |||| || Sbjct: 49320 tcgtaattggagataaaaccccggaaattagaaatgccaaaacaggaatagcacttgata 49379 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 |||||| ||||| ||| |||||||||||||||||||||||||||||| Sbjct: 49380 ttattaaaaatgcccagaaaatatcatattcgtaaagcagaaacata 49426
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 236 bits (119), Expect = 7e-59 Identities = 291/347 (83%), Gaps = 1/347 (0%) Strand = Plus / Plus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| | || || ||||||||||||||| ||||||| Sbjct: 50018 ctccttttcgccatgcataaactaaaccaagaattaggataagcacgaaaatgaaagctt 50077 Query: 60 cgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacgg 119 | |||||| | ||||| |||| ||| ||||||||||||||||| || || ||||| || | Sbjct: 50078 ctataaaagcagatacccccagtacatcgaaactcattgcccacggatacagaaaaacag 50137 Query: 120 tttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||| |||||||||||||||||||| || |||||||||||||| || |||| ||||||| Sbjct: 50138 tttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgta 50197 Query: 180 cccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||| | || || ||||||||||| ||||||||||||||||| ||||| || || | Sbjct: 50198 accaagcatccccgatcggttctatacctgattcataactagaaagtttctccggcccct 50257 Query: 240 cactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgcta 299 |||| || | ||||| || ||||| ||||||||||| ||||||| |||| || Sbjct: 50258 tcctaattggagataaaactccggaaattagaaatgccaaaacaggaatagcacttgata 50317 Query: 300 ttattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 346 ||| || ||||| ||| |||||||||||||||||||||||||||||| Sbjct: 50318 ttagtaaaaatgcccagaaaatatcatattcgtaaagcagaaacata 50364
>gb|M12704.1|MZECPPS2G Maize chloroplast psbG gene encoding PSII-G protein, complete cds Length = 1027 Score = 196 bits (99), Expect = 6e-47 Identities = 138/147 (93%), Gaps = 3/147 (2%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagctt 59 |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| Sbjct: 151 ctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagctt 92 Query: 60 c-gataaaaacggatacacccaatacgtc-gaaactcattgcccaagggtatagaaagac 117 | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 91 ccgataaaaacggatacacccaatacgtcagaaactcattgcccaagggtagagaaagac 32 Query: 118 ggtttccacatcaaaaacaacaaaaac 144 |||||||||||||||||||||||||| Sbjct: 31 tgtttccacatcaaaaacaacaaaaac 5
>emb|CT010572.8| M.truncatula DNA sequence from clone MTH2-161L21 on chromosome 3, complete sequence Length = 121331 Score = 172 bits (87), Expect = 9e-40 Identities = 196/231 (84%), Gaps = 1/231 (0%) Strand = Plus / Minus Query: 136 aacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcccat 195 ||||||||| || |||||||||||||| || ||| | ||||||| |||||| | ||||| Sbjct: 101182 aacaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatcgcccat 101123 Query: 196 gggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggctaa 255 |||||||| || ||||||||||||||||| || ||||| |||| |||| || ||||| Sbjct: 101122 cggttctatcccagattcataactagaaagtttttctggcccttttctaattggagctaa 101063 Query: 256 aagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtcca 315 || || |||||| |||||||||||||||||||| | | | |||||||||||||||||| Sbjct: 101062 aattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgtcca 101003 Query: 316 aaaaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 365 ||||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 101002 aaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 100952
>emb|CT863710.2| Medicago truncatula chromosome 5 clone mth2-52h19, COMPLETE SEQUENCE Length = 118754 Score = 137 bits (69), Expect = 5e-29 Identities = 145/169 (85%), Gaps = 1/169 (0%) Strand = Plus / Minus Query: 198 gttctatacccgattcataactagaaagcttctctggtccttcactaaccggggctaaaa 257 ||||||| || ||||||||||||||||| || ||||| |||| |||| || ||||||| Sbjct: 114622 gttctatcccagattcataactagaaagtttttctggcccttttctaattggagctaaaa 114563 Query: 258 gccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtccaaa 317 || |||||| |||||||||||||||||||| | | | |||||||||||||||||||| Sbjct: 114562 ttccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgtccaaa 114503 Query: 318 aaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 365 ||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 114502 aaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 114454
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 196 gggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggctaa 255 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct: 35298991 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccggagctaa 35298932 Query: 256 aa 257 || Sbjct: 35298931 aa 35298930
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 196 gggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggctaa 255 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct: 35389063 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccggagctaa 35389004 Query: 256 aa 257 || Sbjct: 35389003 aa 35389002
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 196 gggttctatacccgattcataactagaaagcttctctggtccttcactaaccggggctaa 255 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct: 69463 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccggagctaa 69522 Query: 256 aa 257 || Sbjct: 69523 aa 69524
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 101 bits (51), Expect = 3e-18 Identities = 126/151 (83%) Strand = Plus / Minus Query: 89 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 148 |||||||| ||||| || |||| ||| || ||||| |||||||||| ||||||||| | | Sbjct: 29693 aaactcatggcccatggatataaaaaaactgtttctacatcaaaaataacaaaaactaac 29634 Query: 149 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 208 || |||||||||||||| ||| ||||||| | |||||| | ||||| |||||||| || Sbjct: 29633 gcgaacatataatagcgaatttggaattgaatccaagcatcacccattggttctattcct 29574 Query: 209 gattcataactagaaagcttctctggtcctt 239 ||||||||||||| || || |||||||||| Sbjct: 29573 gattcataactagttagtttttctggtcctt 29543 Score = 40.1 bits (20), Expect = 8.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 ctccttttcgcc-tgcataaactaaacc 27 |||||||||||| ||||||||||||||| Sbjct: 29782 ctccttttcgccatgcataaactaaacc 29755
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 410 atttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaac 466 |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 486770 atttctccagaacttctctcttttcctcggtgaaacaagaatctcttttgctcaaac 486826 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 394098 tgggttctatacccgattca 394117
>dbj|AB087446.1| Anthoceros formosae chloroplast ndhK, ndhC mRNA for NADH dehydrogenase 27 kDa subunit, NADH dehydrogenase ND3 subunit, partial and complete cds Length = 443 Score = 89.7 bits (45), Expect = 1e-14 Identities = 129/157 (82%) Strand = Plus / Plus Query: 89 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 148 |||||||| ||||| || || ||||| || ||||| |||||||||| ||| ||||| | Sbjct: 185 aaactcatagcccatggatagagaaaaacagtttcaacatcaaaaataacgaaaactaaa 244 Query: 149 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 208 |||||||||||||| || ||| | ||||| | |||||| ||||||| ||||||||||| Sbjct: 245 gcaaacatataataacgaatttgaaattgaatccaagcatctcccataggttctatacca 304 Query: 209 gattcataactagaaagcttctctggtccttcactaa 245 |||||||||||| || || |||||||||| ||||| Sbjct: 305 cattcataactagtaaatttttctggtcctttactaa 341
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 89 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 148 |||||||| |||||||| || ||||| || ||||| |||||||||| |||||||| | Sbjct: 52621 aaactcatagcccaaggataaagaaaaactgtttctacatcaaaaattacaaaaactaaa 52680 Query: 149 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 208 |||||||||||||| || ||| | ||||| | ||||| ||||||| ||||||||||| Sbjct: 52681 gcaaacatataatatcgaatttgaaattgaatacaagcttctcccatcggttctatacct 52740 Query: 209 gattcataact 219 ||||||||||| Sbjct: 52741 gattcataact 52751
>gb|AC155886.2| Medicago truncatula chromosome 7 BAC clone mth2-173o24, complete sequence Length = 119696 Score = 75.8 bits (38), Expect = 2e-10 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 271 aaatgccaaaataggaataaggcttgctattattagaaatgtccaaaaaatatcatattc 330 |||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| Sbjct: 37643 aaatgccaaaatagcaataacaattgatattattagaaatacccaaaaaatatcatattt 37584 Query: 331 gtaaagcagaaacat-aatgtactcc 355 |||||| | |||||| |||||||||| Sbjct: 37583 gtaaagaaaaaacataaatgtactcc 37558
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 73.8 bits (37), Expect = 6e-10 Identities = 127/157 (80%) Strand = Plus / Plus Query: 89 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 148 |||||||| ||||| || || ||| | || ||||| |||||||||| ||| ||||| | Sbjct: 68028 aaactcatagcccatggatagagagaaacagtttcaacatcaaaaataacgaaaactaaa 68087 Query: 149 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 208 |||||||||||||| || ||| ||||| | |||||| ||||||| ||||||||||| Sbjct: 68088 gcaaacatataataacgaatttaaaattggatccaagcatctcccataggttctatacca 68147 Query: 209 gattcataactagaaagcttctctggtccttcactaa 245 |||||||||||| || || |||||||||| ||||| Sbjct: 68148 cattcataactagtaaatttttctggtcctttactaa 68184
>dbj|D43695.1|APNCPRBCLA Anthoceros formosae chloroplast DNA for ndhK, atpB, accD, partial cds, and ndhC, atpE, rbcL, complete cds Length = 7556 Score = 73.8 bits (37), Expect = 6e-10 Identities = 127/157 (80%) Strand = Plus / Plus Query: 89 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 148 |||||||| ||||| || || ||| | || ||||| |||||||||| ||| ||||| | Sbjct: 339 aaactcatagcccatggatagagagaaacagtttcaacatcaaaaataacgaaaactaaa 398 Query: 149 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 208 |||||||||||||| || ||| ||||| | |||||| ||||||| ||||||||||| Sbjct: 399 gcaaacatataataacgaatttaaaattgaatccaagcatctcccataggttctatacca 458 Query: 209 gattcataactagaaagcttctctggtccttcactaa 245 |||||||||||| || || |||||||||| ||||| Sbjct: 459 cattcataactagtaaatttttctggtcctttactaa 495
>gb|U72654.1|EGU72654 Eustoma grandiflorum flavonoid 3'5'-hydroxylase (F3'5'H) mRNA, complete cds Length = 2124 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 ||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 2032 tattattagaaatgtccaaaaaaaatcatatttgtaaatcagaaacat 1985
>dbj|D14589.1| Eustoma russellianum mRNA for flavonoid 3',5'-hydroxylase, complete cds Length = 2174 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 345 ||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 2029 tattattagaaatgtccaaaaaaaatcatatttgtaaatcagaaacat 1982 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 197 ggttctatacccgattcataactagaaagcttctctggtcctt 239 |||||||| ||||||||||||||||| || || |||||||||| Sbjct: 2130 ggttctatccccgattcataactagacagtttttctggtcctt 2088
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 67.9 bits (34), Expect = 4e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 92 ctcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgca 151 ||||| ||||| ||||| || || || ||||| || ||||| |||||||| || | ||| Sbjct: 108886 ctcatagcccatgggtaaaggaatacagtttctacgtcaaatacaacaaacactaaggca 108945 Query: 152 aacatataatagcgtattcggaattgtacccaagcccctcccatgggttctatacccgat 211 ||||||||||| || ||| ||||||||| ||||| | ||||| ||||||||||| || Sbjct: 108946 aacatataataacgaatttggaattgtatccaagattcgcccataggttctatacctgac 109005 Query: 212 tcataactag 221 |||||||||| Sbjct: 109006 tcataactag 109015
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 65.9 bits (33), Expect = 2e-07 Identities = 208/265 (78%), Gaps = 1/265 (0%) Strand = Plus / Plus Query: 5 ttttcgcc-tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgat 63 |||||||| ||||||||||||||| | || || |||| |||||| || | |||||| || Sbjct: 51811 ttttcgccatgcataaactaaaccaataattagaataaacacgaatattagagcttcaat 51870 Query: 64 aaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttc 123 |||| || ||| ||| ||| | | |||||||| ||||| || || ||||| || ||||| Sbjct: 51871 aaaagcgaatatacctaattcataaaaactcatagcccatggataaagaaaaaccgtttc 51930 Query: 124 cacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtaccca 183 |||||||||| ||| ||||| | ||||| |||| || || || | ||||||| ||| Sbjct: 51931 aacatcaaaaataacgaaaactaaagcaaagctatagtaacggatctgaaattgtatcca 51990 Query: 184 agcccctcccatgggttctatacccgattcataactagaaagcttctctggtccttcact 243 ||| | ||||| ||||||||||| ||||||||||| | | || || ||||| | ||| Sbjct: 51991 agcatcccccattggttctatacctgattcataactggtcattttttcaggtcccttact 52050 Query: 244 aaccggggctaaaagccctgaaatc 268 |||||| |||||||| | ||||||| Sbjct: 52051 aaccggtgctaaaagtcgtgaaatc 52075
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 63.9 bits (32), Expect = 6e-07 Identities = 98/120 (81%) Strand = Plus / Plus Query: 97 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 156 |||||| || || ||||| || ||||| |||||||||| ||| ||||| || |||||||| Sbjct: 316694 tgcccatggataaagaaatactgtttcaacatcaaaaataacgaaaactagggcaaacat 316753 Query: 157 ataatagcgtattcggaattgtacccaagcccctcccatgggttctatacccgattcata 216 |||||||| || ||||| | |||||||||||| |||||||| || || |||||||| Sbjct: 316754 gtaatagcgaatattaaattgaatccaagcccctccaatgggttccatcccagattcata 316813
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 149 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 208 |||||||||||||| || || ||||||| | |||||| |||| |||||||||||||| Sbjct: 37855 gcaaacatataataacgaatctggaattggatccaagcgtctccaatgggttctatacct 37796 Query: 209 gattcataactagaaagcttctctggtcctt 239 |||||||| || | || ||| |||||||||| Sbjct: 37795 gattcatagcttgtaaacttttctggtcctt 37765
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 139 aaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcccatggg 198 |||||| || |||||||| ||||||| |||||||||| ||||||||| | ||||| || Sbjct: 51110 aaaaactagagcaaacatttaatagcaaattcggaattttacccaagcatcccccattgg 51169 Query: 199 ttctatacccgattcataactag 221 ||| |||| ||||||||||||| Sbjct: 51170 ctctctacctgattcataactag 51192 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 298 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataa 347 |||||||| ||||| ||| |||| ||||||||||| || ||||||||||| Sbjct: 51264 tattattataaatgcccagaaaagatcatattcgtgaaacagaaacataa 51313
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 54.0 bits (27), Expect = 6e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 119 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 178 ||||| |||||||||| |||||||| | |||||||||||||| || ||| |||| ||| Sbjct: 37563 gtttctacatcaaaaatcacaaaaactaaagcaaacatataataacgaatttggaactgt 37622 Query: 179 acccaagcccctcccatgggttctatacccgattcataa 217 | ||||| ||||||| ||||| || || ||||||||| Sbjct: 37623 atccaagattctcccattggttcaattcctgattcataa 37661
>gb|AF137379.1| Nephroselmis olivacea chloroplast DNA, complete genome Length = 200799 Score = 54.0 bits (27), Expect = 6e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 97 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 156 ||||||||| |||||||| | ||||| |||||||| |||||||| || || |||||||| Sbjct: 59941 tgcccaaggatatagaaacaaagtttcgacatcaaatacaacaaatactagtgcaaacat 60000 Query: 157 ata 159 ||| Sbjct: 60001 ata 60003
>gb|BT011769.1| Arabidopsis thaliana At1g45904 mRNA, complete cds Length = 728 Score = 46.1 bits (23), Expect = 0.14 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | | || ||||||||| ||||| |||||||| ||||| ||| Sbjct: 290 tgcataaactaaaccaaggattaggataagcacaaaaatgaaagcttctgtaaaagtgga 231 Query: 73 tacacccaatacgtcgaaactca 95 ||| |||||||| || ||||||| Sbjct: 230 tac-cccaatacatctaaactca 209
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 46.1 bits (23), Expect = 0.14 Identities = 80/99 (80%) Strand = Plus / Plus Query: 119 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 178 ||||| |||||||||| ||||||| | |||||||||||||| ||||| |||||| Sbjct: 58063 gtttctacatcaaaaattacaaaaattaaagcaaacatataataacgtatgttgaattgg 58122 Query: 179 acccaagcccctcccatgggttctatacccgattcataa 217 |||||||| | ||||| ||||| || || ||||||||| Sbjct: 58123 acccaagcttcacccattggttcaattcctgattcataa 58161
>gb|AC083835.5|AC083835 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence, complete sequence Length = 133379 Score = 46.1 bits (23), Expect = 0.14 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttcgataaaaacgga 72 ||||||||||||||| | | || ||||||||| ||||| |||||||| ||||| ||| Sbjct: 30551 tgcataaactaaaccaaggattaggataagcacaaaaatgaaagcttctgtaaaagtgga 30610 Query: 73 tacacccaatacgtcgaaactca 95 ||| |||||||| || ||||||| Sbjct: 30611 tac-cccaatacatctaaactca 30632
>emb|AL645926.16| Zebrafish DNA sequence from clone RP71-1G24, complete sequence Length = 141213 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 603 agaaaactttatcgtttcacttt 625 ||||||||||||||||||||||| Sbjct: 10933 agaaaactttatcgtttcacttt 10955
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 46.1 bits (23), Expect = 0.14 Identities = 47/55 (85%) Strand = Plus / Minus Query: 125 acatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 179 |||||||||| |||||||| || |||||||||||||| || ||| | ||||||| Sbjct: 58525 acatcaaaaataacaaaaaatagagcaaacatataataacggatttgaaattgta 58471
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 443617 tagcgtattcggaattgtaaccaagc 443642 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 362504 tagcgtattcggaattgtaaccaagc 362529 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 443543 aaacggaaacgcccaatacatcgaaactcattaccca 443579 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 362430 aaacggaaacgcccaatacatcgaaactcattaccca 362466
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 442775 tagcgtattcggaattgtaaccaagc 442800 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 361677 tagcgtattcggaattgtaaccaagc 361702 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 442701 aaacggaaacgcccaatacatcgaaactcattaccca 442737 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 361603 aaacggaaacgcccaatacatcgaaactcattaccca 361639
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 442771 tagcgtattcggaattgtaaccaagc 442796 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 361673 tagcgtattcggaattgtaaccaagc 361698 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 442697 aaacggaaacgcccaatacatcgaaactcattaccca 442733 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 361599 aaacggaaacgcccaatacatcgaaactcattaccca 361635
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Minus Query: 112 aaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 165 |||||| || ||||||||||||| ||||| ||||| |||||||| || ||||| Sbjct: 1491650 aaagaccgtctccacatcaaaaatgacaaagacgagggcaaacatgtagtagcg 1491597
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaacgagcgcaaacatataata 162 |||||||||| ||||||||| | |||||||||||||| Sbjct: 47135 acatcaaaaataacaaaaactaaagcaaacatataata 47172
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 442628 tagcgtattcggaattgtaaccaagc 442653 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 161 tagcgtattcggaattgtacccaagc 186 ||||||||||||||||||| |||||| Sbjct: 361541 tagcgtattcggaattgtaaccaagc 361566 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 442554 aaacggaaacgcccaatacatcgaaactcattaccca 442590 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 361467 aaacggaaacgcccaatacatcgaaactcattaccca 361503
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 agaatcttttttgttcaaaca 467 ||||||||||||||||||||| Sbjct: 116091 agaatcttttttgttcaaaca 116111
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 2.2 Identities = 57/69 (82%) Strand = Plus / Minus Query: 97 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 156 ||||||||| |||| || || || ||||||||||| || ||||| || || |||||||| Sbjct: 2312630 tgcccaaggatataagaacacagtctccacatcaaagacgacaaagaccagggcaaacat 2312571 Query: 157 ataatagcg 165 ||| ||||| Sbjct: 2312570 atagtagcg 2312562
>emb|CR932579.1|CNS0KYB9 Paramecium tetraurelia, Small GTPase rab, putative, complete gene Length = 3001 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 ttttggatttccattctattt 568 ||||||||||||||||||||| Sbjct: 1847 ttttggatttccattctattt 1827
>gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-like protein gene, partial cds; phycocyanobilin:ferredoxin oxidoreductase-like protein, DevB (devB), DevC (devC), tRNA pseudoridine 55 synthase, CheY (cheY), 50S ribosomal protein L27, 50S ribosomal protein L21, KaiA (kaiA), KaiB (kaiB), KaiC (kaiC), glutathione peroxidase, virulence associated protein C, rRNA methylase-like protein, PhdD (phdD), indole-3-glycerol phosphate synthase-like protein, PdxJ (pdxJ), KguA (kguA), AmpA (ampA), MobA (mobA), transferrin variant A-like protein, 6-pyruvoyl-tetrahydropterin synthase-like protein, NugC (nugC), NdhK (ndhK), Nu3C (nu3C), RubR (rubR), PsbE (psbE), PsbF (psbF), PsbL (psbL), PsbJ (psbJ), apolipoprotein N-acyltransferase-like protein, unknown protein, IspF (ispF), Ap-4-A phosphorylase II-like protein, PanC (panC), Kcy (kcy), and dTDP-glucose 4-6-dehydratase-like protein genes, complete cds; and unknown genes Length = 74355 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 113 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 165 ||||||||||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 35711 aagacggtttctacatcaaagatcacgaatacgagcgcaaacatgtagtagcg 35763
>gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold Length = 574594 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 taattcttatataaagaaaac 609 ||||||||||||||||||||| Sbjct: 345781 taattcttatataaagaaaac 345801
>emb|AJ884786.1| Gigaspora margarita transposon GmarRT1-like sequence, clone GmarRT1-d Length = 769 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 caatttatccagaacttctct 428 ||||||||||||||||||||| Sbjct: 521 caatttatccagaacttctct 541
>emb|AJ884784.1| Gigaspora margarita transposon GmarRT1-like sequence, clone GmarRT1b Length = 752 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 caatttatccagaacttctct 428 ||||||||||||||||||||| Sbjct: 521 caatttatccagaacttctct 541
>emb|CR847884.6| Zebrafish DNA sequence from clone CH211-161H23 in linkage group 1, complete sequence Length = 157311 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 440 tgaaacaagaatcttttttgttcaaacaa 468 |||||||| ||||||||||||||| |||| Sbjct: 74418 tgaaacaaaaatcttttttgttcatacaa 74390
>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence Length = 121763 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 cttatataaagaaaactttat 614 ||||||||||||||||||||| Sbjct: 48652 cttatataaagaaaactttat 48672
>emb|AJ012181.1|AVA012181 Anabaena variabilis hoxR gene and ndhCKJ gene cluster Length = 3020 Score = 42.1 bits (21), Expect = 2.2 Identities = 57/69 (82%) Strand = Plus / Minus Query: 97 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 156 ||||||||| |||| || || || ||||||||||| || ||||| || || |||||||| Sbjct: 1347 tgcccaaggatataagaacacagtctccacatcaaagacgacaaagaccagggcaaacat 1288 Query: 157 ataatagcg 165 ||| ||||| Sbjct: 1287 atagtagcg 1279
>emb|BX908805.1| Human DNA sequence from clone RP11-526F14 on chromosome 1 Contains part of the DPYD gene for dihydropyrimidine dehydrogenase and the 3' end of a novel gene, complete sequence Length = 59492 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 409 aatttatccagaacttctctctttt 433 |||||||||||||||||||| |||| Sbjct: 51481 aatttatccagaacttctctttttt 51457
>emb|AL512385.10| Human DNA sequence from clone RP11-252E3 on chromosome 6 Contains part of the gene KIAA0319 and a keratin 8 (KRT8) pseudogene, complete sequence Length = 28692 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 tagtcaattcaattcagcatt 405 ||||||||||||||||||||| Sbjct: 11478 tagtcaattcaattcagcatt 11498
>emb|CR942205.4| Human DNA sequence from clone RP11-948M1 on chromosome 6, complete sequence Length = 176819 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 tagtcaattcaattcagcatt 405 ||||||||||||||||||||| Sbjct: 93954 tagtcaattcaattcagcatt 93934
>emb|CR925830.3| Human DNA sequence from clone RP11-195J19 on chromosome 6, complete sequence Length = 167847 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 tagtcaattcaattcagcatt 405 ||||||||||||||||||||| Sbjct: 99979 tagtcaattcaattcagcatt 99959
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 113 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 165 ||||||||||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 408832 aagacggtttctacatcaaagatcacgaatacgagcgcaaacatgtagtagcg 408884
>gb|AC021393.10| Homo sapiens chromosome 8, clone RP11-27P7, complete sequence Length = 150858 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 300 ttattagaaatgtccaaaaaatatcatat 328 ||||||| |||||||| |||||||||||| Sbjct: 30476 ttattagtaatgtccataaaatatcatat 30448
>gb|BC068355.1| Danio rerio zgc:85677, mRNA (cDNA clone MGC:85677 IMAGE:6961081), complete cds Length = 2201 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 cacatcaaaaacaacaaaaac 144 ||||||||||||||||||||| Sbjct: 1550 cacatcaaaaacaacaaaaac 1530
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaacg 145 ||||||||||||||||||||| Sbjct: 5414380 acatcaaaaacaacaaaaacg 5414400 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaacg 145 ||||||||||||||||||||| Sbjct: 5414354 acatcaaaaacaacaaaaacg 5414374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaacg 145 ||||||||||||||||||||| Sbjct: 5414328 acatcaaaaacaacaaaaacg 5414348 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 catcaaaaacaacaaaaacg 145 |||||||||||||||||||| Sbjct: 5414580 catcaaaaacaacaaaaacg 5414599
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 agaatcttttttgttcaaaca 467 ||||||||||||||||||||| Sbjct: 1160480 agaatcttttttgttcaaaca 1160500
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 78261 aaacggaaacgcccaatacatcgaaactcattaccca 78297
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 tttccacatcaaaaacaacaa 140 ||||||||||||||||||||| Sbjct: 4865735 tttccacatcaaaaacaacaa 4865755
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 382 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 434 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 148763 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 148711
>emb|AL731786.3|CNS08C8A Oryza sativa chromosome 12, . BAC OSJNBa0010J13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146055 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 382 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 434 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 60359 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 60307
>emb|AL513424.3|HS109M15 Homo sapiens chromosome 9 BAC RP11-109M15, complete sequence Length = 184365 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 attcagcattgtcaatttatc 416 ||||||||||||||||||||| Sbjct: 126091 attcagcattgtcaatttatc 126071
>dbj|AP004526.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05E07, TM0055, complete sequence Length = 94516 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 gctgcatcttctttaaagatt 520 ||||||||||||||||||||| Sbjct: 14531 gctgcatcttctttaaagatt 14551
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 agaatcttttttgttcaaaca 467 ||||||||||||||||||||| Sbjct: 10766 agaatcttttttgttcaaaca 10786
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 113 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 165 ||||||||||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 1211974 aagacggtttctacatcaaagatcacgaatacgagcgcaaacatgtagtagcg 1211922
>dbj|D13112.1|RICMT16 Oryza sativa (japonica cultivar-group) mitochondrial gene for tRNAs, complete sequences Length = 4894 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 66 aaacggatacacccaatacgtcgaaactcattgccca 102 ||||||| || |||||||| |||||||||||| |||| Sbjct: 4758 aaacggaaacgcccaatacatcgaaactcattaccca 4794
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 101322 tgggttctatacccgattca 101341
>gb|DQ205647.1| Eimeria tenella calmodulin-like domain protein kinase isoform 2 mRNA, complete cds Length = 2187 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cttcgataaaaacggataca 76 |||||||||||||||||||| Sbjct: 1710 cttcgataaaaacggataca 1729
>gb|AC124323.10| Mus musculus chromosome 19, clone RP24-444B6, complete sequence Length = 150803 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 aagaatcttttttgttcaaa 465 |||||||||||||||||||| Sbjct: 61745 aagaatcttttttgttcaaa 61726
>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland Research Institute) complete sequence Length = 209654 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 tttagcctttgtttcctctgtgct 502 ||||||||||||||||| |||||| Sbjct: 143408 tttagcctttgtttcctgtgtgct 143431
>gb|AC140351.2| Mus musculus BAC clone RP24-258E8 from chromosome 8, complete sequence Length = 167073 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaac 144 |||||||||||||||||||| Sbjct: 150873 acatcaaaaacaacaaaaac 150892
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 181830 aaatgtccaaaaaatatcttattc 181807
>gb|AY312507.1| Thelohania solenopsae isolate LA 2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 318 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 taattcttatataaagaaaa 608 |||||||||||||||||||| Sbjct: 165 taattcttatataaagaaaa 146
>gb|AY312506.1| Thelohania solenopsae isolate Florida small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 339 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 taattcttatataaagaaaa 608 |||||||||||||||||||| Sbjct: 176 taattcttatataaagaaaa 157
>gb|AY312505.1| Thelohania solenopsae isolate Texas 3430 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 317 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 taattcttatataaagaaaa 608 |||||||||||||||||||| Sbjct: 158 taattcttatataaagaaaa 139
>gb|AY312504.1| Thelohania solenopsae isolate Texas 3427 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 330 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 taattcttatataaagaaaa 608 |||||||||||||||||||| Sbjct: 175 taattcttatataaagaaaa 156
>gb|AY312503.1| Thelohania solenopsae isolate Texas 3344 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 283 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 taattcttatataaagaaaa 608 |||||||||||||||||||| Sbjct: 151 taattcttatataaagaaaa 132
>gb|AY312502.1| Thelohania solenopsae isolate Texas 3362 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 1726 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 taattcttatataaagaaaa 608 |||||||||||||||||||| Sbjct: 1255 taattcttatataaagaaaa 1236
>ref|XM_716710.1| Candida albicans SC5314 putative U3 snoRNP protein Utp20p fragment (CaO19_1732), mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 aacttaaattagtcaattca 395 |||||||||||||||||||| Sbjct: 1615 aacttaaattagtcaattca 1596
>ref|XM_716590.1| Candida albicans SC5314 putative U3 snoRNP protein Utp20p fragment (CaO19_9300), mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 aacttaaattagtcaattca 395 |||||||||||||||||||| Sbjct: 1615 aacttaaattagtcaattca 1596
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 356188 tgggttctatacccgattca 356169
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 139487 tgggttctatacccgattca 139506
>gb|BT012390.1| Arabidopsis thaliana At1g45904 mRNA, complete cds Length = 162 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 13 tgcataaactaaaccgacaactaagataagcacgaaaatcaaagcttc 60 ||||||||||||||| | | || ||||||||| ||||| |||||||| Sbjct: 73 tgcataaactaaaccaaggattaggataagcacaaaaatgaaagcttc 26
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 159027 aaatgtccaaaaaatatcttattc 159004
>gb|AC145616.2| Homo sapiens BAC clone RP11-1172A19 from UL, complete sequence Length = 172810 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 19997 aaatgtccaaaaaatatcttattc 20020
>gb|AF511566.1| Pennisetum glaucum mitochondrial gene sequence Length = 927 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 87 tgggttctatacccgattca 106
>gb|AC005550.1| Homo sapiens PAC clone RP4-620P6 from 7, complete sequence Length = 133237 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 ttctttaaagattcatccaa 527 |||||||||||||||||||| Sbjct: 26941 ttctttaaagattcatccaa 26960
>gb|AC145547.3| Homo sapiens BAC clone RP11-1437O6 from UL, complete sequence Length = 185637 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 92547 aaatgtccaaaaaatatcttattc 92570
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 127308 aaatgtccaaaaaatatcttattc 127331
>gb|AC087428.3| Homo sapiens chromosome 3 clone RP11-18I13 map 3p, complete sequence Length = 149633 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 130846 aaatgtccaaaaaatatcttattc 130823
>emb|AL356099.15| Human DNA sequence from clone RP11-357A18 on chromosome 10, complete sequence Length = 163152 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ttaaattagtcaattcaatt 398 |||||||||||||||||||| Sbjct: 100171 ttaaattagtcaattcaatt 100152
>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3 Contains the 5' end of the F13A1 gene for coagulation factor XIII A chain precursor, a SNAP19 (sRNA activating protein complex 19kDa subunit) pseudogene and two putative novel gene, complete sequence Length = 147038 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 ttctttaaagattcatccaa 527 |||||||||||||||||||| Sbjct: 67301 ttctttaaagattcatccaa 67320
>gb|AC053481.13| Homo sapiens chromosome 17, clone RP11-51L5, complete sequence Length = 176235 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 589 taattcttatataaagaaaacttt 612 |||| ||||||||||||||||||| Sbjct: 18979 taatacttatataaagaaaacttt 19002
>gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, complete sequence Length = 198470 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cacatcaaaaacaacaaaaa 143 |||||||||||||||||||| Sbjct: 16919 cacatcaaaaacaacaaaaa 16900
>emb|CR381572.5| Human DNA sequence from clone bP-2168N6 on chromosome 21, complete sequence Length = 184355 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 126224 aaatgtccaaaaaatatcttattc 126247
>gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, complete sequence Length = 177578 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ttaaattagtcaattcaatt 398 |||||||||||||||||||| Sbjct: 174066 ttaaattagtcaattcaatt 174085
>gb|AC160561.2| Mus musculus BAC clone RP23-102D22 from chromosome 12, complete sequence Length = 204231 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaac 144 |||||||||||||||||||| Sbjct: 65777 acatcaaaaacaacaaaaac 65796
>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence Length = 164550 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 ttgtacccaagcccctcccatggg 198 |||| ||||||||||||||||||| Sbjct: 114434 ttgttcccaagcccctcccatggg 114457
>gb|AF418272.1|AF418272 Homo sapiens coagulation factor XIII, A1 polypeptide (F13A1) gene, complete cds Length = 178952 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ttctttaaagattcatccaa 527 |||||||||||||||||||| Sbjct: 31497 ttctttaaagattcatccaa 31478
>gb|AC158130.7| Mus musculus chromosome 19, clone RP24-360F11, complete sequence Length = 206879 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 aagaatcttttttgttcaaa 465 |||||||||||||||||||| Sbjct: 200185 aagaatcttttttgttcaaa 200166
>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence Length = 226696 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cacatcaaaaacaacaaaaa 143 |||||||||||||||||||| Sbjct: 63811 cacatcaaaaacaacaaaaa 63830
>emb|BX813561.1|CNS0ADQ3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1409 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttgctattattagaaatgtc 313 |||||||||||||||||||| Sbjct: 630 ttgctattattagaaatgtc 649
>emb|BX813717.1|CNS0ADTC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1323 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttgctattattagaaatgtc 313 |||||||||||||||||||| Sbjct: 541 ttgctattattagaaatgtc 560
>emb|BX816565.1|CNS0AAP2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1375 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttgctattattagaaatgtc 313 |||||||||||||||||||| Sbjct: 591 ttgctattattagaaatgtc 610
>gb|AC152168.2| Mus musculus BAC clone RP23-96H18 from chromosome 8, complete sequence Length = 219434 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 acatcaaaaacaacaaaaac 144 |||||||||||||||||||| Sbjct: 129047 acatcaaaaacaacaaaaac 129066
>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I, complete sequence Length = 133843 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ttgctattattagaaatgtc 313 |||||||||||||||||||| Sbjct: 47914 ttgctattattagaaatgtc 47895
>gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, complete sequence Length = 200420 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cacatcaaaaacaacaaaaa 143 |||||||||||||||||||| Sbjct: 184483 cacatcaaaaacaacaaaaa 184464
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1029_F04 Length = 141834 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 aattagtcaattcaattcagcatt 405 ||||||||||||||| |||||||| Sbjct: 46140 aattagtcaattcaagtcagcatt 46163
>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence Length = 158617 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cacatcaaaaacaacaaaaa 143 |||||||||||||||||||| Sbjct: 78226 cacatcaaaaacaacaaaaa 78207
>gb|AC008026.7| Homo sapiens chromosome 17, clone RP11-464D20, complete sequence Length = 220184 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 589 taattcttatataaagaaaacttt 612 |||| ||||||||||||||||||| Sbjct: 177211 taatacttatataaagaaaacttt 177234
>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence Length = 166978 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cacatcaaaaacaacaaaaa 143 |||||||||||||||||||| Sbjct: 15895 cacatcaaaaacaacaaaaa 15876
>emb|BX546448.4| Human DNA sequence from clone RP11-509J10 on chromosome 22, complete sequence Length = 172149 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 56533 aaatgtccaaaaaatatcttattc 56510
>dbj|AB159445.1| Bombyx mori DNA, chromosome 2, clone:544H24, complete sequence Length = 205107 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ttaaattagtcaattcaatt 398 |||||||||||||||||||| Sbjct: 58142 ttaaattagtcaattcaatt 58161
>dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15 Length = 83689 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 atacccgattcataactaga 222 |||||||||||||||||||| Sbjct: 60785 atacccgattcataactaga 60766
>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete sequence Length = 159320 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttcttatataaagaaaactt 611 |||||||||||||||||||| Sbjct: 49813 ttcttatataaagaaaactt 49794
>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete sequence Length = 157800 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttcttatataaagaaaactt 611 |||||||||||||||||||| Sbjct: 128118 ttcttatataaagaaaactt 128099
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 212508 tgggttctatacccgattca 212489
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence Length = 196745 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aaatgtccaaaaaatatcatattc 330 |||||||||||||||||| ||||| Sbjct: 13043 aaatgtccaaaaaatatcttattc 13020
>emb|X69720.1|MITANAD9 T.aestivum mitochondrial nad9 gene for 30 kDa subunit of complex I NADH dehydrogenase Length = 935 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tgggttctatacccgattca 214 |||||||||||||||||||| Sbjct: 87 tgggttctatacccgattca 106
>emb|AL359174.14| Human DNA sequence from clone RP11-423D17 on chromosome 6, complete sequence Length = 146372 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttcttatataaagaaaactt 611 |||||||||||||||||||| Sbjct: 6974 ttcttatataaagaaaactt 6955
>dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone:576A9, complete sequence Length = 112519 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttcttatataaagaaaactt 611 |||||||||||||||||||| Sbjct: 83995 ttcttatataaagaaaactt 83976
>gb|AC092956.5| Homo sapiens 3 BAC RP11-648O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194510 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cacatcaaaaacaacaaaaa 143 |||||||||||||||||||| Sbjct: 176269 cacatcaaaaacaacaaaaa 176288
>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 2/4 Length = 300000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttcttatataaagaaaactt 611 |||||||||||||||||||| Sbjct: 284290 ttcttatataaagaaaactt 284271
>dbj|AB041512.1| Homo sapiens genomic DNA, chromosome 6q21, clone:520L4, complete sequence Length = 102910 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttcttatataaagaaaactt 611 |||||||||||||||||||| Sbjct: 4280 ttcttatataaagaaaactt 4261 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,584,562 Number of Sequences: 3902068 Number of extensions: 7584562 Number of successful extensions: 175821 Number of sequences better than 10.0: 189 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 174134 Number of HSP's gapped (non-prelim): 1582 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
