ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TEFF2_MOUSE (Q9QYM9) Transmembrane protein with EGF-like and two... 29 8.9
2TEFF2_HUMAN (Q9UIK5) Transmembrane protein with EGF-like and two... 29 8.9
3REQU_MOUSE (Q61103) Zinc-finger protein ubi-d4 (Requiem) (Apopto... 29 8.9
4REQU_HUMAN (Q92785) Zinc-finger protein ubi-d4 (Requiem) (Apopto... 29 8.9
5REQU_CHICK (P58268) Zinc-finger protein ubi-d4 (Requiem) (Apopto... 29 8.9

>TEFF2_MOUSE (Q9QYM9) Transmembrane protein with EGF-like and two|
           follistatin-like domains 2 precursor (Tomoregulin) (TR)
          Length = 374

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 23  YKCTYISAIVESSRLLASCTVSSCKLCWSRKNDRGNTIHRGRGMHGHPAERWRARVKT 196
           ++   I+A++ + ++   C V    LC +RK  R N IHR +   GH +     R  T
Sbjct: 317 FQYVLIAAVIGTIQIAVICVVV---LCITRKCPRSNRIHRQKQNTGHYSSDNTTRAST 371



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>TEFF2_HUMAN (Q9UIK5) Transmembrane protein with EGF-like and two|
           follistatin-like domains 2 precursor (Transmembrane
           protein containing epidermal growth factor and
           follistatin domains) (Tomoregulin) (TR) (Hyperplastic
           polyposis protein 1)
          Length = 374

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 23  YKCTYISAIVESSRLLASCTVSSCKLCWSRKNDRGNTIHRGRGMHGHPAERWRARVKT 196
           ++   I+A++ + ++   C V    LC +RK  R N IHR +   GH +     R  T
Sbjct: 317 FQYVLIAAVIGTIQIAVICVVV---LCITRKCPRSNRIHRQKQNTGHYSSDNTTRAST 371



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>REQU_MOUSE (Q61103) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response|
           zinc finger protein) (D4, zinc and double PHD fingers
           family 2)
          Length = 391

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 86  SSCKLCWSRKNDRGNTIHRGRGMHGHPAERWRARVKTH 199
           S+C + W  K  RG  +  G+ ++ +PA RWR + + H
Sbjct: 51  SNCYI-WMEKRHRGPGLASGQ-LYSYPARRWRKKRRAH 86



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>REQU_HUMAN (Q92785) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response|
           zinc finger protein) (D4, zinc and double PHD fingers
           family 2)
          Length = 391

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 86  SSCKLCWSRKNDRGNTIHRGRGMHGHPAERWRARVKTH 199
           S+C + W  K  RG  +  G+ ++ +PA RWR + + H
Sbjct: 51  SNCYI-WMEKRHRGPGLASGQ-LYSYPARRWRKKRRAH 86



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>REQU_CHICK (P58268) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response|
           zinc finger protein)
          Length = 405

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 86  SSCKLCWSRKNDRGNTIHRGRGMHGHPAERWRARVKTH 199
           S+C + W  K  RG  +  G+ ++ +PA RWR + + H
Sbjct: 51  SNCYI-WMEKRHRGPGLAAGQ-LYSYPARRWRKKRRAH 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,720,078
Number of Sequences: 219361
Number of extensions: 584934
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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