ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11i03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105811.1| Zea mays PCO068837 mRNA sequence Length = 525 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 292 agcagatggcgcacgagtttgggttctcctccatgctcatgttgcgcacgtagtagtact 233 Query: 283 gcgg 286 |||| Sbjct: 232 gcgg 229
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct: 13222941 agcaaatggcgcacgagttggggttctcctccatgctcatgttgcggacgtagtagtact 13222882 Query: 283 gcggcggc 290 |||||||| Sbjct: 13222881 gcggcggc 13222874 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 82 agtttcatcttgcaaactttgttggtctc 110 ||||| ||||||||||||||||||||||| Sbjct: 13223270 agtttgatcttgcaaactttgttggtctc 13223242
>dbj|AK071491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098J19, full insert sequence Length = 1289 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct: 979 agcaaatggcgcacgagttggggttctcctccatgctcatgttgcggacgtagtagtact 920 Query: 283 gcggcggc 290 |||||||| Sbjct: 919 gcggcggc 912
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct: 13177215 agcaaatggcgcacgagttggggttctcctccatgctcatgttgcggacgtagtagtact 13177156 Query: 283 gcggcggc 290 |||||||| Sbjct: 13177155 gcggcggc 13177148 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 82 agtttcatcttgcaaactttgttggtctc 110 ||||| ||||||||||||||||||||||| Sbjct: 13177544 agtttgatcttgcaaactttgttggtctc 13177516
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| || Sbjct: 107802 agcaaatggcgcacgagttggggttctcctccatgctcatgttgcggacgtagtagtact 107861 Query: 283 gcggcggc 290 |||||||| Sbjct: 107862 gcggcggc 107869 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 82 agtttcatcttgcaaactttgttggtctc 110 ||||| ||||||||||||||||||||||| Sbjct: 107473 agtttgatcttgcaaactttgttggtctc 107501
>ref|NM_187580.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 588 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| ||||| |||| ||| |||||||||||||||||||||| || | ||||||||| || Sbjct: 586 agcaaatggcacacgggttggggttctcctccatgctcatgtccctcgcgtagtagtact 527 Query: 283 gcggcggcacgtacgg 298 | |||||| ||||||| Sbjct: 526 gtggcggcgcgtacgg 511
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| ||||| |||| ||| |||||||||||||||||||||| || | ||||||||| || Sbjct: 1492075 agcaaatggcacacgggttggggttctcctccatgctcatgtccctcgcgtagtagtact 1492016 Query: 283 gcggcggcacgtacgg 298 | |||||| ||||||| Sbjct: 1492015 gtggcggcgcgtacgg 1492000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 gcacgcacgcacgcgcgactc 216 ||||||||||||||||||||| Sbjct: 4013852 gcacgcacgcacgcgcgactc 4013832 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcg 315 |||||||||||||||||||| Sbjct: 26218069 cggcggcgggtacgccggcg 26218050 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 acgccggcggcgccggccgg 326 |||||||||||||||||||| Sbjct: 4039132 acgccggcggcgccggccgg 4039151
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07, complete sequence Length = 117612 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| ||||| |||| ||| |||||||||||||||||||||| || | ||||||||| || Sbjct: 29248 agcaaatggcacacgggttggggttctcctccatgctcatgtccctcgcgtagtagtact 29189 Query: 283 gcggcggcacgtacgg 298 | |||||| ||||||| Sbjct: 29188 gtggcggcgcgtacgg 29173
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| ||||| |||| ||| |||||||||||||||||||||| || | ||||||||| || Sbjct: 1492073 agcaaatggcacacgggttggggttctcctccatgctcatgtccctcgcgtagtagtact 1492014 Query: 283 gcggcggcacgtacgg 298 | |||||| ||||||| Sbjct: 1492013 gtggcggcgcgtacgg 1491998 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 gcacgcacgcacgcgcgactc 216 ||||||||||||||||||||| Sbjct: 4013963 gcacgcacgcacgcgcgactc 4013943 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcg 315 |||||||||||||||||||| Sbjct: 26309378 cggcggcgggtacgccggcg 26309359 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 acgccggcggcgccggccgg 326 |||||||||||||||||||| Sbjct: 4039243 acgccggcggcgccggccgg 4039262
>dbj|AK099929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L13, full insert sequence Length = 965 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctcatgttccgcacgtagtagtgct 282 |||| ||||| |||| ||| |||||||||||||||||||||| || | ||||||||| || Sbjct: 785 agcaaatggcacacgggttggggttctcctccatgctcatgtccctcgcgtagtagtact 726 Query: 283 gcggcggcacgtacgg 298 | |||||| ||||||| Sbjct: 725 gtggcggcgcgtacgg 710
>ref|NM_197514.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053C23.18), mRNA Length = 540 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 434 cttgtcgccgtccttcttggccgccgcgtcgtccttcttg 473 |||||||||||||||||||||||| || ||||||||||| Sbjct: 348 cttgtcgccgtccttcttggccgcatcgccgtccttcttg 309 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctc 260 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 538 agcagatggcgcaggagttggggttttcctccatgctc 501
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 434 cttgtcgccgtccttcttggccgccgcgtcgtccttcttg 473 |||||||||||||||||||||||| || ||||||||||| Sbjct: 61198 cttgtcgccgtccttcttggccgcatcgccgtccttcttg 61237 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctc 260 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 61008 agcagatggcgcaggagttggggttttcctccatgctc 61045
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 434 cttgtcgccgtccttcttggccgccgcgtcgtccttcttg 473 |||||||||||||||||||||||| || ||||||||||| Sbjct: 20183463 cttgtcgccgtccttcttggccgcatcgccgtccttcttg 20183502 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctc 260 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 20183273 agcagatggcgcaggagttggggttttcctccatgctc 20183310
>dbj|AK069934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035E16, full insert sequence Length = 935 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 434 cttgtcgccgtccttcttggccgccgcgtcgtccttcttg 473 |||||||||||||||||||||||| || ||||||||||| Sbjct: 492 cttgtcgccgtccttcttggccgcatcgccgtccttcttg 453 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctc 260 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 682 agcagatggcgcaggagttggggttttcctccatgctc 645
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 434 cttgtcgccgtccttcttggccgccgcgtcgtccttcttg 473 |||||||||||||||||||||||| || ||||||||||| Sbjct: 20194739 cttgtcgccgtccttcttggccgcatcgccgtccttcttg 20194778 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 223 agcagatggcgcacgagtttgggttctcctccatgctc 260 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 20194549 agcagatggcgcaggagttggggttttcctccatgctc 20194586
>ref|XM_502533.1| Yarrowia lipolytica CLIB122, YALI0D07480g predicted mRNA Length = 1305 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttcttggc 454 |||||||||||||||||||||||| Sbjct: 1224 cttcttgtcgccgtccttcttggc 1201 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 488 cttcttgtcgccgtccttctt 508 ||||||||||||||||||||| Sbjct: 1224 cttcttgtcgccgtccttctt 1204
>gb|AF509761.1| Hordeum vulgare subsp. spontaneum OSU15 Rpg1 pseudogene, complete sequence Length = 4638 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 513 tccttcttgtcgccgtccttcttc 490 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 511 cttcttgtcgccgtccttctt 491
>gb|AF509760.1| Hordeum vulgare subsp. vulgare Moravian III Rpg1 pseudogene, complete sequence Length = 4632 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 516 tccttcttgtcgccgtccttcttc 493 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 514 cttcttgtcgccgtccttctt 494
>gb|AF509759.1| Hordeum vulgare subsp. vulgare Wisconsin 38 Rpg1 pseudogene, complete sequence Length = 4615 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 505 tccttcttgtcgccgtccttcttc 482 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 503 cttcttgtcgccgtccttctt 483
>gb|AF509758.1| Hordeum vulgare subsp. vulgare Lion Rpg1 pseudogene, complete sequence Length = 4622 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 501 tccttcttgtcgccgtccttcttc 478 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 499 cttcttgtcgccgtccttctt 479
>gb|AF509757.1| Hordeum vulgare subsp. vulgare Steptoe Rpg1 pseudogene, complete sequence Length = 4621 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 505 tccttcttgtcgccgtccttcttc 482 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 503 cttcttgtcgccgtccttctt 483
>gb|AF509756.1| Hordeum vulgare subsp. vulgare Peatland barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4615 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 503 tccttcttgtcgccgtccttcttc 480 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 501 cttcttgtcgccgtccttctt 481
>gb|AF509755.1| Hordeum vulgare subsp. vulgare Kindred barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4613 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 494 tccttcttgtcgccgtccttcttc 471 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 492 cttcttgtcgccgtccttctt 472
>gb|AF509754.1| Hordeum vulgare subsp. vulgare Leger barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4637 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 514 tccttcttgtcgccgtccttcttc 491 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 512 cttcttgtcgccgtccttctt 492
>gb|AF509753.1| Hordeum vulgare subsp. vulgare Chevron barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4622 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 508 tccttcttgtcgccgtccttcttc 485 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 506 cttcttgtcgccgtccttctt 486
>gb|AF509752.1| Hordeum vulgare subsp. vulgare Bowman barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4627 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 512 tccttcttgtcgccgtccttcttc 489 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 510 cttcttgtcgccgtccttctt 490
>gb|AF509751.1| Hordeum vulgare subsp. vulgare 80-TT barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4626 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 512 tccttcttgtcgccgtccttcttc 489 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 510 cttcttgtcgccgtccttctt 490
>gb|AF509750.1| Hordeum vulgare subsp. vulgare Q21861 barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4618 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 507 tccttcttgtcgccgtccttcttc 484 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 505 cttcttgtcgccgtccttctt 485
>gb|AF509749.1| Hordeum vulgare subsp. spontaneum OSU6 barley stem rust resistance protein (Rpg1) gene, complete cds Length = 4585 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 503 tccttcttgtcgccgtccttcttc 480 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 501 cttcttgtcgccgtccttctt 481
>gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem rust resistance protein (Rpg1) gene, complete cds Length = 17974 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 7326 tccttcttgtcgccgtccttcttc 7303 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 7324 cttcttgtcgccgtccttctt 7304
>gb|AF509747.1| Hordeum vulgare subsp. vulgare stem rust resistance protein Rpg1 (Rpg1) mRNA, complete cds Length = 3302 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttcttc 509 |||||||||||||||||||||||| Sbjct: 698 tccttcttgtcgccgtccttcttc 675 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtcgccgtccttctt 451 ||||||||||||||||||||| Sbjct: 696 cttcttgtcgccgtccttctt 676
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 431 cttcttgtcgccgtccttcttggc 454 |||||||||||||||||||||||| Sbjct: 955178 cttcttgtcgccgtccttcttggc 955201 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 cttcttgtcgccgtccttctt 508 ||||||||||||||||||||| Sbjct: 955178 cttcttgtcgccgtccttctt 955198
>gb|AF218879.1| Hepatitis C virus isolate hc66 E2 mRNA, partial cds Length = 344 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 475 cgtcgccatcctccttcttgtcgc 498 |||||||||||||||||||||||| Sbjct: 60 cgtcgccatcctccttcttgtcgc 83
>ref|XM_381750.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01574.1) partial mRNA Length = 1047 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 478 cgccatcctccttcttgtcgccgtccttctt 508 ||||||| |||||||||||| |||||||||| Sbjct: 625 cgccatcttccttcttgtcgtcgtccttctt 595
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 300 ggcgggtacgccggcggcgccgg 322 ||||||||||||||||||||||| Sbjct: 2840106 ggcgggtacgccggcggcgccgg 2840128 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 ggcggcacgtacggcggcggg 305 ||||||||||||||||||||| Sbjct: 2632262 ggcggcacgtacggcggcggg 2632282 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 272 gtagtagtgctgcggcggcacgtacggc 299 ||||||| ||||||| |||||||||||| Sbjct: 1422863 gtagtagagctgcggaggcacgtacggc 1422890
>ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA Length = 992 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 485 gcggcggcacgtacggcggcgg 464
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 cggcgggtacgccggcggcgcc 320 |||||||||||||||||||||| Sbjct: 293387 cggcgggtacgccggcggcgcc 293408
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 3455320 gcggcggcacgtacggcggcgg 3455341 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcgactcc 217 ||||||||||||||||||| |||| Sbjct: 29618134 acgcacgcacgcacgcgcgcctcc 29618111 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ccggcggcgccggccggtac 329 |||||||||||||||||||| Sbjct: 977921 ccggcggcgccggccggtac 977940
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 72024 gcggcggcacgtacggcggcgg 72045
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 146874 gcggcggcacgtacggcggcgg 146895
>dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134F12, full insert sequence Length = 1013 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 485 gcggcggcacgtacggcggcgg 464
>dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033M04, full insert sequence Length = 992 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 485 gcggcggcacgtacggcggcgg 464
>dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E12, full insert sequence Length = 1384 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gcggcggcacgtacggcggcgg 304 |||||||||||||||||||||| Sbjct: 902 gcggcggcacgtacggcggcgg 881
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 293 gtacggcggcgggtacgccggcggcg 318 ||||||||||||||| |||||||||| Sbjct: 1280067 gtacggcggcgggtaggccggcggcg 1280042
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 420 acggcggcgggcttcttgtcgc 441 |||||||||||||||||||||| Sbjct: 2518840 acggcggcgggcttcttgtcgc 2518819
>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence Length = 193749 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 tcaagacgcacgcacgcacgc 209 ||||||||||||||||||||| Sbjct: 42115 tcaagacgcacgcacgcacgc 42095
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcgg 316 ||||||||||||||||||||| Sbjct: 121245 cggcggcgggtacgccggcgg 121225
>emb|AL162273.13| Human DNA sequence from clone RP11-215N21 on chromosome 10 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 103011 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 cagatggcgcacgagtttgggttct 249 |||||||| |||||||||||||||| Sbjct: 42762 cagatggcccacgagtttgggttct 42786
>emb|BX064759.1|CNS09M4R Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC48BC09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 352 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 483 tcctccttcttgtcgccgtccttcttccc 511 |||||||||||| || ||||||||||||| Sbjct: 257 tcctccttcttgccggcgtccttcttccc 285
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 431 cttcttgtcgccgtccttcttggcc 455 |||||||||| |||||||||||||| Sbjct: 67360 cttcttgtcggcgtccttcttggcc 67384
>emb|AJ310184.1|RLE310184 Rhizobium leguminosarum bv. viciae dppABCDF genes for dipeptide permease and rirA gene for rhizobial iron regulator Length = 6916 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 463 cgtccttcttgccgtcgccatcctc 487 |||||||||||||| |||||||||| Sbjct: 3442 cgtccttcttgccggcgccatcctc 3466
>gb|AC009386.14| Homo sapiens 12 BAC RP11-447I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164012 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 cagatggcgcacgagtttgggttct 249 |||||||| |||||||||||||||| Sbjct: 79339 cagatggcccacgagtttgggttct 79363
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 gcacgcacgcacgcgcgactc 216 ||||||||||||||||||||| Sbjct: 85516 gcacgcacgcacgcgcgactc 85536 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 acgccggcggcgccggccgg 326 |||||||||||||||||||| Sbjct: 60236 acgccggcggcgccggccgg 60217
>dbj|AB193032.1| Corynebacterium glutamicum DNA, strain specific island 5, strain: R Length = 32840 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 tccttcttgtcgccgtccttc 506 ||||||||||||||||||||| Sbjct: 11372 tccttcttgtcgccgtccttc 11352
>gb|AY916513.1| Bovine herpesvirus 5 isolate EVI-88 glycoprotein D (US6) gene, partial cds Length = 338 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcgg 316 ||||||||||||||||||||| Sbjct: 117 cggcggcgggtacgccggcgg 97
>ref|XM_309151.2| Anopheles gambiae str. PEST ENSANGP00000018517 (ENSANGG00000016028), partial mRNA Length = 2445 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 tacggcggcgggtacgccggc 314 ||||||||||||||||||||| Sbjct: 1924 tacggcggcgggtacgccggc 1944
>gb|AY916516.1| Bovine herpesvirus 5 isolate MV clone B truncated glycoprotein D (US6) gene, complete cds Length = 338 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcgg 316 ||||||||||||||||||||| Sbjct: 117 cggcggcgggtacgccggcgg 97
>gb|AY916515.1| Bovine herpesvirus 5 isolate MV clone A glycoprotein D (US6) gene, partial cds Length = 338 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcgg 316 ||||||||||||||||||||| Sbjct: 117 cggcggcgggtacgccggcgg 97
>gb|AY916514.1| Bovine herpesvirus 5 isolate LABMIC-KA98 truncated glycoprotein D (US6) gene, complete cds Length = 338 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcgg 316 ||||||||||||||||||||| Sbjct: 117 cggcggcgggtacgccggcgg 97
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 ttcttgtcgccgtccttcttc 509 ||||||||||||||||||||| Sbjct: 1717189 ttcttgtcgccgtccttcttc 1717209 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 ttcttgtcgccgtccttctt 451 |||||||||||||||||||| Sbjct: 1717189 ttcttgtcgccgtccttctt 1717208
>gb|AC123621.10| Mus musculus chromosome 19, clone RP23-74D13, complete sequence Length = 197720 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 ttcatcttgcaaactttgttggtct 109 |||| |||||||||||||||||||| Sbjct: 50518 ttcaccttgcaaactttgttggtct 50542
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 acggcggcgggcttcttgtcg 440 ||||||||||||||||||||| Sbjct: 506930 acggcggcgggcttcttgtcg 506950
>gb|AC005943.1|AC005943 Homo sapiens chromosome 19, cosmid R30538, complete sequence Length = 42301 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 caagacgcacgcacgcacgcgcgac 214 |||||||||||||||||||| |||| Sbjct: 33020 caagacgcacgcacgcacgcacgac 33044
>gb|U14656.1|BHU14656 Bovine herpesvirus type 5 glycoprotein D (gD) gene, complete cds Length = 1614 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcgg 316 ||||||||||||||||||||| Sbjct: 363 cggcggcgggtacgccggcgg 343
>ref|XM_476097.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 834 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 acggcagcggggccacggcggcgg 429 ||||| |||||||||||||||||| Sbjct: 737 acggcggcggggccacggcggcgg 760
>ref|NM_188674.1| Oryza sativa (japonica cultivar-group), Ozsa8277 predicted mRNA Length = 1959 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 115 acgcacgcacgcacgcgcga 134
>ref|XM_550532.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1132 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ccggcggcgccggccggtac 329 |||||||||||||||||||| Sbjct: 528 ccggcggcgccggccggtac 509
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06, complete sequence Length = 151656 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 acggcagcggggccacggcggcgg 429 ||||| |||||||||||||||||| Sbjct: 14587 acggcggcggggccacggcggcgg 14564
>ref|XM_479920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||||||| |||||||| |||| Sbjct: 455 cggcggcgggtacggcggcggcggcggc 482
>ref|XM_507115.1| PREDICTED Oryza sativa (japonica cultivar-group), P0582D05.112 mRNA Length = 984 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||||||| |||||||| |||| Sbjct: 455 cggcggcgggtacggcggcggcggcggc 482
>ref|XM_473910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1020 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 ccacggcggcgggcttcttg 437 |||||||||||||||||||| Sbjct: 547 ccacggcggcgggcttcttg 528
>ref|XM_469225.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1062 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cggcggcgggtacgccggcg 315 |||||||||||||||||||| Sbjct: 84 cggcggcgggtacgccggcg 103
>gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, complete sequence Length = 213493 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||| |||| |||||||||||| Sbjct: 86666 cggcggcggggacgcgggcggcgccggc 86639
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 58461 acgcacgcacgcacgcgcga 58480
>gb|AC115868.12| Mus musculus chromosome 7, clone RP24-329F21, complete sequence Length = 181717 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 71663 acgcacgcacgcacgcgcga 71644
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23, complete sequence Length = 173764 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 acggcagcggggccacggcggcgg 429 ||||| |||||||||||||||||| Sbjct: 114572 acggcggcggggccacggcggcgg 114549
>gb|AY020385.1| Oryza sativa microsatellite MRG2710 containing (GA)X15, closest to marker R1943, genomic sequence Length = 230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 agcggcatgtggtgcgggaa 406 |||||||||||||||||||| Sbjct: 134 agcggcatgtggtgcgggaa 153
>ref|XM_597110.2| PREDICTED: Bos taurus similar to Protein KIAA0711 (LOC518907), mRNA Length = 1926 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ggcagcggggccacggcggc 427 |||||||||||||||||||| Sbjct: 1364 ggcagcggggccacggcggc 1345
>ref|XM_369115.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00129.4) partial mRNA Length = 1095 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ccttcttggccgccgcgtcg 464 |||||||||||||||||||| Sbjct: 523 ccttcttggccgccgcgtcg 504
>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence Length = 422021 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gacgcacgcacgcacgcgcg 212 |||||||||||||||||||| Sbjct: 152086 gacgcacgcacgcacgcgcg 152067
>gb|AY543972.1| Salmo salar clone Rsa324 microsatellite sequence Length = 433 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 agacgcacgcacgcacgcgc 211 |||||||||||||||||||| Sbjct: 223 agacgcacgcacgcacgcgc 204
>gb|AC146798.2| Xenopus tropicalis chromosome CH216-140P23, complete sequence Length = 86848 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tgggttctcctccatgctcatgtt 265 ||||||| |||||||||||||||| Sbjct: 29576 tgggttcccctccatgctcatgtt 29553
>gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosome 10, complete sequence Length = 154681 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 19721 acgcacgcacgcacgcgcga 19702
>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences Length = 74658 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 ccacggcggcgggcttcttg 437 |||||||||||||||||||| Sbjct: 70779 ccacggcggcgggcttcttg 70760
>ref|NM_001008802.1| Rattus norvegicus type II keratin Kb1 (Kb1), mRNA Length = 1878 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcacgtacggcggcgg 304 |||||||||||||||||||| Sbjct: 1588 ggcggcacgtacggcggcgg 1607
>gb|AC156593.2| Laccaria bicolor clone JGIAHZW-12X, complete sequence Length = 39354 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 ttgccgtcgccatcctccttcttg 494 ||||||||| |||||||||||||| Sbjct: 16349 ttgccgtcgtcatcctccttcttg 16326
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 agcagatggcgcacgagttt 242 |||||||||||||||||||| Sbjct: 1243214 agcagatggcgcacgagttt 1243233
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 gcggcatgtggtgcggcagcggca 393 |||||| ||||||||||||||||| Sbjct: 3159652 gcggcaggtggtgcggcagcggca 3159675
>gb|AC102463.12| Mus musculus chromosome 1, clone RP24-328M5, complete sequence Length = 155111 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 65362 acgcacgcacgcacgcgcga 65343
>ref|NM_001030708.1| Gallus gallus similar to DNA segment, Chr 11, Wayne State University 99, expressed (LOC417450), mRNA Length = 2978 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 actgctggttcatcatgtag 347 |||||||||||||||||||| Sbjct: 552 actgctggttcatcatgtag 533
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 ccgtccttcttcccgccgtc 517 |||||||||||||||||||| Sbjct: 79136 ccgtccttcttcccgccgtc 79117
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 agacgcacgcacgcacgcgc 211 |||||||||||||||||||| Sbjct: 85794 agacgcacgcacgcacgcgc 85813
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 ccacggcggcgggcttcttg 437 |||||||||||||||||||| Sbjct: 47017 ccacggcggcgggcttcttg 47036
>emb|AJ720087.1| Gallus gallus mRNA for hypothetical protein, clone 10f20 Length = 2978 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 actgctggttcatcatgtag 347 |||||||||||||||||||| Sbjct: 552 actgctggttcatcatgtag 533
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gcgggaacggcagcggggcc 419 |||||||||||||||||||| Sbjct: 1944534 gcgggaacggcagcggggcc 1944553
>gb|AF470003.1| Oncorhynchus mykiss microsatellite OMM1221 sequence Length = 521 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 411 acgcacgcacgcacgcgcga 430
>gb|AC160561.2| Mus musculus BAC clone RP23-102D22 from chromosome 12, complete sequence Length = 204231 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 79867 acgcacgcacgcacgcgcga 79848
>emb|CR406071.1| Gallus gallus finished cDNA, clone ChEST965f12 Length = 883 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 actgctggttcatcatgtag 347 |||||||||||||||||||| Sbjct: 496 actgctggttcatcatgtag 477
>emb|BX931165.2| Gallus gallus finished cDNA, clone ChEST1022e4 Length = 883 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 actgctggttcatcatgtag 347 |||||||||||||||||||| Sbjct: 482 actgctggttcatcatgtag 463
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcg 315 |||||||||||||||||||| Sbjct: 47528 cggcggcgggtacgccggcg 47509
>tpg|BK001580.1| TPA: TPA_exp: Rattus norvegicus type II keratin Kb1 mRNA, complete cds Length = 1878 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcacgtacggcggcgg 304 |||||||||||||||||||| Sbjct: 1588 ggcggcacgtacggcggcgg 1607
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 agacgcacgcacgcacgcgc 211 |||||||||||||||||||| Sbjct: 33873895 agacgcacgcacgcacgcgc 33873914 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 ccacggcggcgggcttcttg 437 |||||||||||||||||||| Sbjct: 31469334 ccacggcggcgggcttcttg 31469353
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||||||| |||||||| |||| Sbjct: 1639206 cggcggcgggtacggcggcggcggcggc 1639179 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 agcggcatgtggtgcgggaa 406 |||||||||||||||||||| Sbjct: 370296 agcggcatgtggtgcgggaa 370315
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 acggcagcggggccacggcggcgg 429 ||||| |||||||||||||||||| Sbjct: 6067018 acggcggcggggccacggcggcgg 6066995
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gacgcacgcacgcacgcgcg 212 |||||||||||||||||||| Sbjct: 29456774 gacgcacgcacgcacgcgcg 29456793
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 7551630 acgcacgcacgcacgcgcga 7551649
>gb|AY232745.1| Hepatitis C virus clone MD2b8-2 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AY232744.1| Hepatitis C virus clone MD2b8-1 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AY232741.1| Hepatitis C virus clone MD2b6-2 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AY232740.1| Hepatitis C virus clone MD2b6-1 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AY232739.1| Hepatitis C virus clone MD2b5-2 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AY232737.1| Hepatitis C virus clone MD2b4-2 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AY232736.1| Hepatitis C virus clone MD2b4-1 polyprotein mRNA, complete cds Length = 9406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, complete sequence Length = 207345 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 atactatacacagaggcagaggca 152 |||||||||||||||| ||||||| Sbjct: 118307 atactatacacagagggagaggca 118330
>gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, complete cds; Wbscr1 (Wbscr1) gene, alternative splice products, complete cds; Wbscr5 (Wbscr5) gene, alternative splice products, complete cds; and replication factor C, 40kDa subunit (Rfc2) gene, complete cds Length = 114898 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcgactcc 217 |||||||||||||||| ||||||| Sbjct: 86839 acgcacgcacgcacgcacgactcc 86816
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 cgccggcggcgccggccggt 327 |||||||||||||||||||| Sbjct: 2534058 cgccggcggcgccggccggt 2534039
>gb|AF289664.1|AF289664 Mus musculus CYLN2, RFC2, WBSCR15, and EIF4H genes, complete cds Length = 161852 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcgactcc 217 |||||||||||||||| ||||||| Sbjct: 124155 acgcacgcacgcacgcacgactcc 124178
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 100422 acgcacgcacgcacgcgcga 100441
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gacgcacgcacgcacgcgcg 212 |||||||||||||||||||| Sbjct: 51804 gacgcacgcacgcacgcgcg 51823
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcgactcc 217 ||||||||||||||||||| |||| Sbjct: 61719 acgcacgcacgcacgcgcgcctcc 61696
>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_H06 Length = 139868 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gacgcacgcacgcacgcgcg 212 |||||||||||||||||||| Sbjct: 107646 gacgcacgcacgcacgcgcg 107665
>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J13 Length = 152837 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ccggcggcgccggccggtac 329 |||||||||||||||||||| Sbjct: 40794 ccggcggcgccggccggtac 40813
>gb|AF238486.1|AF238486 Hepatitis C virus 2b polyprotein gene, complete cds Length = 9416 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 1421 gccatcctccttcttgtcgc 1440
>emb|AJ511249.1|HEC511249 Hepatitis C virus partial polyprotein gene, E1 and E2 proteins, genomic RNA, isolate JB15-7 Length = 268 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 136 gccatcctccttcttgtcgc 155
>emb|AJ511244.1|HEC511244 Hepatitis C virus partial polyprotein gene, E1 and E2 proteins, genomic RNA, isolate JB15-2 Length = 268 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 136 gccatcctccttcttgtcgc 155
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||||||| |||||||| |||| Sbjct: 38706 cggcggcgggtacggcggcggcggcggc 38679
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 agcggcatgtggtgcgggaa 406 |||||||||||||||||||| Sbjct: 79810 agcggcatgtggtgcgggaa 79829
>dbj|AK119491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D04, full insert sequence Length = 1360 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 agcggcatgtggtgcgggaa 406 |||||||||||||||||||| Sbjct: 110 agcggcatgtggtgcgggaa 91
>ref|XM_316481.2| Anopheles gambiae str. PEST ENSANGP00000013439 (ENSANGG00000010950), partial mRNA Length = 1116 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 cggcggcatgtggtgcggca 387 |||||||||||||||||||| Sbjct: 351 cggcggcatgtggtgcggca 370
>dbj|AK107190.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A03, full insert sequence Length = 1637 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cggcggcgggtacgccggcg 315 |||||||||||||||||||| Sbjct: 118 cggcggcgggtacgccggcg 137
>dbj|AK101577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050L02, full insert sequence Length = 984 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||||||| |||||||| |||| Sbjct: 455 cggcggcgggtacggcggcggcggcggc 482
>dbj|AK070034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A08, full insert sequence Length = 963 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 cggcggcgggtacgccggcggcgccggc 323 |||||||||||||| |||||||| |||| Sbjct: 455 cggcggcgggtacggcggcggcggcggc 482
>dbj|AK067573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108E08, full insert sequence Length = 2675 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 acgcacgcacgcacgcgcgactcc 217 ||||||||||||||||||| |||| Sbjct: 64 acgcacgcacgcacgcgcgcctcc 87
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 cgggcttcttgtcgccgtccttct 450 |||||||||||||||| ||||||| Sbjct: 3134687 cgggcttcttgtcgccctccttct 3134664
>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full insert sequence Length = 3170 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 agacgcacgcacgcacgcgc 211 |||||||||||||||||||| Sbjct: 84 agacgcacgcacgcacgcgc 103
>emb|BX649644.5| Zebrafish DNA sequence from clone CH211-215N5 in linkage group 18, complete sequence Length = 120810 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcga 213 |||||||||||||||||||| Sbjct: 11553 acgcacgcacgcacgcgcga 11534
>dbj|AK061513.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H02, full insert sequence Length = 1132 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ccggcggcgccggccggtac 329 |||||||||||||||||||| Sbjct: 528 ccggcggcgccggccggtac 509
>gb|AF083375.1|AF083375 Dasya ocellata ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) mRNA, partial cds; chloroplast gene for chloroplast product Length = 1231 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ttggtctcgtaaaaacgatc 122 |||||||||||||||||||| Sbjct: 682 ttggtctcgtaaaaacgatc 701
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 ccacggcggcgggcttcttg 437 |||||||||||||||||||| Sbjct: 88618 ccacggcggcgggcttcttg 88637
>emb|AJ237587.1|LMA237587 Leishmania major cDNA16 gene family (haspa1, haspb, haspa2, sherp1 and sherp2 genes) Length = 13939 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 agacgcacgcacgcacgcgc 211 |||||||||||||||||||| Sbjct: 678 agacgcacgcacgcacgcgc 697
>emb|X54806.1|RNCKERIMP R.norvegicus mRNA for cytokeratin type I (3' end) Length = 981 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcacgtacggcggcgg 304 |||||||||||||||||||| Sbjct: 214 ggcggcacgtacggcggcgg 233
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tgtcgccgtccttcttggcc 455 |||||||||||||||||||| Sbjct: 792434 tgtcgccgtccttcttggcc 792415
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cggcggcgggtacgccggcg 315 |||||||||||||||||||| Sbjct: 2777274 cggcggcgggtacgccggcg 2777255
>gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome 5, complete sequence Length = 231866 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 acgcacgcacgcacgcgcgactcc 217 |||||||||||||||| ||||||| Sbjct: 104307 acgcacgcacgcacgcacgactcc 104284
>gb|L16657.1|HPCEP1ED Hepatitis C virus (DK8) envelope protein E1 gene, partial cds Length = 576 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gccatcctccttcttgtcgc 498 |||||||||||||||||||| Sbjct: 544 gccatcctccttcttgtcgc 563
>dbj|AB070938.1| Streptomyces avermitilis melanin biosynthetic gene cluster Length = 6497 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 272 gtagtagtgctgcggcggcacgtacggc 299 ||||||| ||||||| |||||||||||| Sbjct: 4775 gtagtagagctgcggaggcacgtacggc 4748 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,073,168 Number of Sequences: 3902068 Number of extensions: 4073168 Number of successful extensions: 173887 Number of sequences better than 10.0: 146 Number of HSP's better than 10.0 without gapping: 149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 170843 Number of HSP's gapped (non-prelim): 3016 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
