Clone Information

BLAST Search Result

Clone Name	rbasd11h12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF486634.1\| Triticum aestivum ferredoxin precursor, mRNA, com...	644	0.0
2	gb\|AC137611.3\| Oryza sativa (japonica cultivar-group) chromosome...	379	e-102
3	gb\|AC147462.2\| Oryza sativa (japonica cultivar-group) chromosome...	379	e-102
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	379	e-102
5	dbj\|AK103416.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	379	e-102
6	dbj\|D30794.1\|RICFERRA Oryza sativa (japonica cultivar-group) gen...	379	e-102
7	dbj\|D83660.1\|RICRF Oryza sativa mRNA for root ferredoxin, partia...	280	6e-72
8	gb\|AY107646.1\| Zea mays PCO072676 mRNA sequence	224	3e-55
9	dbj\|AB001386.1\| Maize DNA for Fd VI, complete cds	224	3e-55
10	dbj\|AB001385.1\| Maize mRNA for Fd VI, complete cds	224	3e-55
11	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	7e-10
12	dbj\|AP003794.4\| Oryza sativa (japonica cultivar-group) genomic D...	74	7e-10
13	dbj\|AP003287.3\| Oryza sativa (japonica cultivar-group) genomic D...	74	7e-10
14	dbj\|AK119310.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	7e-10
15	dbj\|AK069860.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	7e-10
16	gb\|BT016313.1\| Zea mays clone Contig146 mRNA sequence	70	1e-08
17	gb\|AY104148.1\| Zea mays PCO088579 mRNA sequence	70	1e-08
18	gb\|M73831.1\|MZEFD3 Maize ferredoxin III (Fd) isoprotein mRNA, pFD3	62	3e-06
19	dbj\|AB001387.1\| Maize DNA for Fd III, complete cds	62	3e-06
20	gb\|AC122752.10\| Mus musculus chromosome 8, clone RP24-358A6, com...	44	0.59
21	dbj\|AK140078.1\| Mus musculus adult male corpora quadrigemina cDN...	44	0.59
22	dbj\|AK041938.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	44	0.59
23	gb\|AE004690.1\| Pseudomonas aeruginosa PAO1, section 251 of 529 o...	44	0.59
24	ref\|XM_516818.1\| PREDICTED: Pan troglodytes similar to hypotheti...	42	2.3
25	ref\|XM_470335.1\| Oryza sativa (japonica cultivar-group), mRNA	42	2.3
26	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	2.3
27	gb\|AC092557.7\| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom...	42	2.3
28	gb\|BC036239.1\| Homo sapiens chromosome 3 open reading frame 44, ...	42	2.3
29	emb\|Z82244.1\|HS286B10 Human DNA sequence from clone CTA-286B10 o...	42	2.3
30	emb\|Z46944.1\|CSNPHFDXN C.sinensis mRNA for non-photosynthetic fe...	42	2.3
31	dbj\|AK091958.1\| Homo sapiens cDNA FLJ34639 fis, clone KIDNE2016371	42	2.3
32	dbj\|AB183443.1\| Rhodococcus sp. TKN46 gyrB gene for DNA gyrase s...	42	2.3
33	ref\|NM_152394.3\| Homo sapiens chromosome 3 open reading frame 44...	42	2.3
34	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
35	gb\|AY826849.1\| Isochrysis galbana clone ISF1 chloroplast ferredo...	42	2.3
36	gb\|AC011317.23\| Homo sapiens 3 BAC RP11-103G8 (Roswell Park Canc...	42	2.3
37	dbj\|AK121063.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.3
38	ref\|XM_472400.1\| Oryza sativa (japonica cultivar-group), predic...	40	9.2
39	gb\|CP000243.1\| Escherichia coli UTI89, complete genome	40	9.2
40	ref\|XM_775945.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.2
41	emb\|AL662947.3\|OSJN00148 Oryza sativa genomic DNA, chromosome 4,...	40	9.2
42	gb\|AC084198.31\| Homo sapiens 3 BAC RP11-454H13 (Roswell Park Can...	40	9.2
43	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
44	emb\|BX323807.8\| Zebrafish DNA sequence from clone DKEY-154P10 in...	40	9.2
45	gb\|AC002329.2\|AC002329 Arabidopsis thaliana chromosome II sectio...	40	9.2
46	dbj\|AK120232.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
47	dbj\|AK062016.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
48	gb\|AY111751.1\| Zea mays CL56157_1 mRNA sequence	40	9.2

>gb|AF486634.1| Triticum aestivum ferredoxin precursor, mRNA, complete cds
          Length = 800

 Score =  644 bits (325), Expect = 0.0
 Identities = 424/457 (92%)
 Strand = Plus / Minus

                                                                       
Query: 174 attagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaa 233
           |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 592 attagtagagttcctcctcttggtgggtttgaatgacgcaatctgccttggggtatgaga 533

                                                                       
Query: 234 tgcaggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgact 293
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 532 tgcaggtcagaaggtacccctcgcccatctggttctcatcaaggaaggagccctccgact 473

                                                                       
Query: 294 gatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaag 353
           |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 472 gatcgacctccccggtagtcatcttgcccgcgcatgtggagcacgatccggcgcggcagg 413

                                                                       
Query: 354 agaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcagggg 413
           |||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 412 agaatggcagctccactccggcattttcagctgcctcaagaatgtaggtgtcttcagggg 353

                                                                       
Query: 414 cctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacggcagtcg 473
           |||||||||| |||||||| |||||||||| || ||||||||||||||||||||| |  |
Sbjct: 352 cctcaaactcatgctcttcaccgtccgggcttatgagcttcaccttgtgcacggccgcag 293

                                                                       
Query: 474 cagacaccctgaacttgtttgacatccttaggcctggcaggcttggcgtttgcttcgagt 533
           |||||||||||||||||||||||||||||||||  | || | |||| | |||||| | ||
Sbjct: 292 cagacaccctgaacttgtttgacatccttaggcaagacaagtttggtggttgcttggcgt 233

                                                                       
Query: 534 aaccgatgaaggaaggggtcctgatcgctggagcaatggcccgggaaccagccccagatt 593
           ||||||||||||||| | |||||||||| ||||||| |||||||||||||||||| ||||
Sbjct: 232 aaccgatgaaggaagcgctcctgatcgccggagcaacggcccgggaaccagccccggatt 173

                                                
Query: 594 tagcaaaggacactcctggagcagtggcggttgacat 630
           |||||||||||||||||||||||||||| ||||||||
Sbjct: 172 tagcaaaggacactcctggagcagtggcagttgacat 136



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 49/52 (94%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                               
Query: 14  ttttacatcaattattgctcacaactcatatagcacgatctcatcaaaagac 65
           ||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 734 ttttacatcaattattg-tcacaactcatatatcacgatcccatcaaaagac 684



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 92  atctctacataacagaaggtaaccgaacaacgaatccaccatgcagcttcaacaatt 148
           ||||||| ||||||||||| |||||||||| |||||||||| | | |||||||||||
Sbjct: 646 atctctagataacagaaggcaaccgaacaatgaatccaccacgaaacttcaacaatt 590

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>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14,
              complete sequence
          Length = 185623

 Score =  379 bits (191), Expect = e-102
 Identities = 347/399 (86%)
 Strand = Plus / Plus

                                                                          
Query: 176    tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
              ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 114753 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 114812

                                                                          
Query: 236    caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
              || ||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 114813 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 114872

                                                                          
Query: 296    tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
              || || || || |  | |||||| ||||| || |||||||| ||||| || ||||| |||
Sbjct: 114873 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 114932

                                                                          
Query: 356    aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
              ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 114933 aatggcagctccaccccggcagtttcagcggcctcgagaatgtaggtatcttcaggggct 114992

                                                                          
Query: 416    tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacggcagtcgca 475
              ||||||||||||||  | |||||||||||||  ||||| ||||||||||| || ||||| 
Sbjct: 114993 tcaaactcgtgctcgacaccgtccgggcctataagctttaccttgtgcaccgctgtcgcg 115052

                                                                          
Query: 476    gacaccctgaacttgtttgacatccttaggcctggcaggcttggcgtttgcttcgagtaa 535
              ||||||||||||||||| || ||||||||||||| || | |    |||||||| | ||||
Sbjct: 115053 gacaccctgaacttgttggagatccttaggcctgacatgttcaatgtttgctttgcgtaa 115112

                                                     
Query: 536    ccgatgaaggaaggggtcctgatcgctggagcaatggcc 574
              || |||||||||||| || || |||| ||||||||||||
Sbjct: 115113 ccaatgaaggaagggctcttggtcgccggagcaatggcc 115151



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                          
Query: 22     caattattgctcacaactcatatagcacgatctcatcaaaagac 65
              ||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 114607 caattattg-tcacaactcatatgacacggtcccatcaaaagac 114649

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>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
              complete sequence
          Length = 160142

 Score =  379 bits (191), Expect = e-102
 Identities = 347/399 (86%)
 Strand = Plus / Plus

                                                                          
Query: 176    tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
              ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 153980 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 154039

                                                                          
Query: 236    caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
              || ||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 154040 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 154099

                                                                          
Query: 296    tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
              || || || || |  | |||||| ||||| || |||||||| ||||| || ||||| |||
Sbjct: 154100 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 154159

                                                                          
Query: 356    aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
              ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 154160 aatggcagctccaccccggcagtttcagcggcctcgagaatgtaggtatcttcaggggct 154219

                                                                          
Query: 416    tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacggcagtcgca 475
              ||||||||||||||  | |||||||||||||  ||||| ||||||||||| || ||||| 
Sbjct: 154220 tcaaactcgtgctcgacaccgtccgggcctataagctttaccttgtgcaccgctgtcgcg 154279

                                                                          
Query: 476    gacaccctgaacttgtttgacatccttaggcctggcaggcttggcgtttgcttcgagtaa 535
              ||||||||||||||||| || ||||||||||||| || | |    |||||||| | ||||
Sbjct: 154280 gacaccctgaacttgttggagatccttaggcctgacatgttcaatgtttgctttgcgtaa 154339

                                                     
Query: 536    ccgatgaaggaaggggtcctgatcgctggagcaatggcc 574
              || |||||||||||| || || |||| ||||||||||||
Sbjct: 154340 ccaatgaaggaagggctcttggtcgccggagcaatggcc 154378



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                          
Query: 22     caattattgctcacaactcatatagcacgatctcatcaaaagac 65
              ||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 153834 caattattg-tcacaactcatatgacacggtcccatcaaaagac 153876

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  379 bits (191), Expect = e-102
 Identities = 347/399 (86%)
 Strand = Plus / Plus

                                                                            
Query: 176      tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
                ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 21560897 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 21560956

                                                                            
Query: 236      caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
                || ||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 21560957 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 21561016

                                                                            
Query: 296      tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
                || || || || |  | |||||| ||||| || |||||||| ||||| || ||||| |||
Sbjct: 21561017 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 21561076

                                                                            
Query: 356      aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
                ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 21561077 aatggcagctccaccccggcagtttcagcggcctcgagaatgtaggtatcttcaggggct 21561136

                                                                            
Query: 416      tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacggcagtcgca 475
                ||||||||||||||  | |||||||||||||  ||||| ||||||||||| || ||||| 
Sbjct: 21561137 tcaaactcgtgctcgacaccgtccgggcctataagctttaccttgtgcaccgctgtcgcg 21561196

                                                                            
Query: 476      gacaccctgaacttgtttgacatccttaggcctggcaggcttggcgtttgcttcgagtaa 535
                ||||||||||||||||| || ||||||||||||| || | |    |||||||| | ||||
Sbjct: 21561197 gacaccctgaacttgttggagatccttaggcctgacatgttcaatgtttgctttgcgtaa 21561256

                                                       
Query: 536      ccgatgaaggaaggggtcctgatcgctggagcaatggcc 574
                || |||||||||||| || || |||| ||||||||||||
Sbjct: 21561257 ccaatgaaggaagggctcttggtcgccggagcaatggcc 21561295



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                            
Query: 22       caattattgctcacaactcatatagcacgatctcatcaaaagac 65
                ||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 21560751 caattattg-tcacaactcatatgacacggtcccatcaaaagac 21560793

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>dbj|AK103416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128I21, full
            insert sequence
          Length = 1337

 Score =  379 bits (191), Expect = e-102
 Identities = 347/399 (86%)
 Strand = Plus / Minus

                                                                        
Query: 176  tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
            ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1046 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 987

                                                                        
Query: 236  caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
            || ||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 986  catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 927

                                                                        
Query: 296  tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
            || || || || |  | |||||| ||||| || |||||||| ||||| || ||||| |||
Sbjct: 926  tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 867

                                                                        
Query: 356  aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 866  aatggcagctccaccccggcagtttcagcggcctcgagaatgtaggtatcttcaggggct 807

                                                                        
Query: 416  tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacggcagtcgca 475
            ||||||||||||||  | |||||||||||||  ||||| ||||||||||| || ||||| 
Sbjct: 806  tcaaactcgtgctcgacaccgtccgggcctataagctttaccttgtgcaccgctgtcgcg 747

                                                                        
Query: 476  gacaccctgaacttgtttgacatccttaggcctggcaggcttggcgtttgcttcgagtaa 535
            ||||||||||||||||| || ||||||||||||| || | |    |||||||| | ||||
Sbjct: 746  gacaccctgaacttgttggagatccttaggcctgacatgttcaatgtttgctttgcgtaa 687

                                                   
Query: 536  ccgatgaaggaaggggtcctgatcgctggagcaatggcc 574
            || |||||||||||| || || |||| ||||||||||||
Sbjct: 686  ccaatgaaggaagggctcttggtcgccggagcaatggcc 648



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 22   caattattgctcacaactcatatagcacgatctcatcaaaagac 65
            ||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 1192 caattattg-tcacaactcatatgacacggtcccatcaaaagac 1150

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>dbj|D30794.1|RICFERRA Oryza sativa (japonica cultivar-group) gene for ferredoxin, complete
            cds
          Length = 1829

 Score =  379 bits (191), Expect = e-102
 Identities = 347/399 (86%)
 Strand = Plus / Minus

                                                                        
Query: 176  tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
            ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1573 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 1514

                                                                        
Query: 236  caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
            || ||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 1513 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 1454

                                                                        
Query: 296  tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
            || || || || |  | |||||| ||||| || |||||||| ||||| || ||||| |||
Sbjct: 1453 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 1394

                                                                        
Query: 356  aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1393 aatggcagctccaccccggcagtttcagcggcctcgagaatgtaggtatcttcaggggct 1334

                                                                        
Query: 416  tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacggcagtcgca 475
            ||||||||||||||  | |||||||||||||  ||||| ||||||||||| || ||||| 
Sbjct: 1333 tcaaactcgtgctcgacaccgtccgggcctataagctttaccttgtgcaccgctgtcgcg 1274

                                                                        
Query: 476  gacaccctgaacttgtttgacatccttaggcctggcaggcttggcgtttgcttcgagtaa 535
            ||||||||||||||||| || ||||||||||||| || | |    |||||||| | ||||
Sbjct: 1273 gacaccctgaacttgttggagatccttaggcctgacatgttcaatgtttgctttgcgtaa 1214

                                                   
Query: 536  ccgatgaaggaaggggtcctgatcgctggagcaatggcc 574
            || |||||||||||| || || |||| ||||||||||||
Sbjct: 1213 ccaatgaaggaagggctcttggtcgccggagcaatggcc 1175



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 22   caattattgctcacaactcatatagcacgatctcatcaaaagac 65
            ||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 1719 caattattg-tcacaactcatatgacacggtcccatcaaaagac 1677

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>dbj|D83660.1|RICRF Oryza sativa mRNA for root ferredoxin, partial cds
          Length = 603

 Score =  280 bits (141), Expect = 6e-72
 Identities = 222/249 (89%)
 Strand = Plus / Minus

                                                                       
Query: 176 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
           ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 263 tagtagagttcttcctccttgtgggtgtgaatgacgcaatccgccttagggtacgaaatg 204

                                                                       
Query: 236 caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
           || ||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 203 catgtcagaacgtatccctcgcccatctggttctcgtcgaggaaggatccttccgactga 144

                                                                       
Query: 296 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
           || || || || |  | |||||| ||||| || |||||||| ||||| || ||||| |||
Sbjct: 143 tcaacttctcccgatgacatcttacccgcacatgtggagcatgatccagcacggcatgag 84

                                                                       
Query: 356 aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 83  aatggcagctccaccccggcagtttcagcggcctcgagaatgtaggtatcttcaggggct 24

                    
Query: 416 tcaaactcg 424
           |||||||||
Sbjct: 23  tcaaactcg 15



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 22  caattattgctcacaactcatatagcacgatctcatcaaaagac 65
           ||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 409 caattattg-tcacaactcatatgacacggtcccatcaaaagac 367

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>gb|AY107646.1| Zea mays PCO072676 mRNA sequence
          Length = 941

 Score =  224 bits (113), Expect = 3e-55
 Identities = 245/289 (84%)
 Strand = Plus / Minus

                                                                       
Query: 176 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
           ||||| || |||||||| | ||||||||| |||||||| || ||||||||||| || |||
Sbjct: 623 tagtacaggtcctcctccttgtgggtgtggatgacgcagtctgccttggggtaggagatg 564

                                                                       
Query: 236 caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
           ||||| || ||||| |||||| ||||||||   || ||||||||||| ||||||||||| 
Sbjct: 563 caggtgaggaggtacccctcggccatctggccgtcgtcgaggaaggacccctccgactgg 504

                                                                       
Query: 296 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
           |||||||| ||||  | |||| | || ||||| |||||||| || ||||||||||| |||
Sbjct: 503 tcgacctcgccggccgacatcctcccggcgcaggtggagcaggacccggcgcggcaggag 444

                                                                       
Query: 356 aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
           || ||||||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 443 aagggcagctccaccccggcggtctcggccgcctcgaggatgtaggtgtcgtcgggggcc 384

                                                            
Query: 416 tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgca 464
           || |||||||||||   |||||||||||| || ||||||||||||||||
Sbjct: 383 tcgaactcgtgctccgtcccgtccgggccgaccagcttcaccttgtgca 335

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>dbj|AB001386.1| Maize DNA for Fd VI, complete cds
          Length = 2351

 Score =  224 bits (113), Expect = 3e-55
 Identities = 245/289 (84%)
 Strand = Plus / Minus

                                                                        
Query: 176  tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
            ||||| || |||||||| | ||||||||| |||||||| || ||||||||||| || |||
Sbjct: 2047 tagtacaggtcctcctccttgtgggtgtggatgacgcagtctgccttggggtaggagatg 1988

                                                                        
Query: 236  caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
            ||||| || ||||| |||||| ||||||||   || ||||||||||| ||||||||||| 
Sbjct: 1987 caggtgaggaggtacccctcggccatctggccgtcgtcgaggaaggacccctccgactgg 1928

                                                                        
Query: 296  tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
            |||||||| ||||  | |||| | || ||||| |||||||| || ||||||||||| |||
Sbjct: 1927 tcgacctcgccggccgacatcctcccggcgcaggtggagcaggacccggcgcggcaggag 1868

                                                                        
Query: 356  aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
            || ||||||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 1867 aagggcagctccaccccggcggtctcggccgcctcgaggatgtaggtgtcgtcgggggcc 1808

                                                             
Query: 416  tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgca 464
            || |||||||||||   |||||||||||| || ||||||||||||||||
Sbjct: 1807 tcgaactcgtgctccgtcccgtccgggccgaccagcttcaccttgtgca 1759

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>dbj|AB001385.1| Maize mRNA for Fd VI, complete cds
          Length = 845

 Score =  224 bits (113), Expect = 3e-55
 Identities = 245/289 (84%)
 Strand = Plus / Minus

                                                                       
Query: 176 tagtagagttcctcctcttggtgggtgtgaatgacgcaatccgccttggggtatgaaatg 235
           ||||| || |||||||| | ||||||||| |||||||| || ||||||||||| || |||
Sbjct: 621 tagtacaggtcctcctccttgtgggtgtggatgacgcagtctgccttggggtaggagatg 562

                                                                       
Query: 236 caggtcagaaggtatccctcgcccatctggttctcatcgaggaaggagccctccgactga 295
           ||||| || ||||| |||||| ||||||||   || ||||||||||| ||||||||||| 
Sbjct: 561 caggtgaggaggtacccctcggccatctggccgtcgtcgaggaaggacccctccgactgg 502

                                                                       
Query: 296 tcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcgcggcaagag 355
           |||||||| ||||  | |||| | || ||||| |||||||| || ||||||||||| |||
Sbjct: 501 tcgacctcgccggccgacatcctcccggcgcaggtggagcaggacccggcgcggcaggag 442

                                                                       
Query: 356 aatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtcttcaggggcc 415
           || ||||||||||||||||| || || || |||||||| ||||||||||| || ||||||
Sbjct: 441 aagggcagctccaccccggcggtctcggccgcctcgaggatgtaggtgtcgtcgggggcc 382

                                                            
Query: 416 tcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgca 464
           || |||||||||||   |||||||||||| || ||||||||||||||||
Sbjct: 381 tcgaactcgtgctccgtcccgtccgggccgaccagcttcaccttgtgca 333

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 160/201 (79%)
 Strand = Plus / Minus

                                                                            
Query: 287      tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcg 346
                |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| ||||| 
Sbjct: 37235096 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccggcc 37235037

                                                                            
Query: 347      cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
                ||||| ||| | ||||||||||  |||||    || || || ||||| | ||||||||| 
Sbjct: 37235036 cggcacgagtaaggcagctccaggccggcctcctcggcggcgtcgaggacgtaggtgtcc 37234977

                                                                            
Query: 407      tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacg 466
                || ||  |||| | ||||  |||  | |||||||| || | |||||||||||||||||||
Sbjct: 37234976 tcgggcacctcgagctcgctctccgcgccgtccggcccgatgagcttcaccttgtgcacg 37234917

                                     
Query: 467      gcagtcgcagacaccctgaac 487
                || | ||| ||| ||||||||
Sbjct: 37234916 gccgccgcggacgccctgaac 37234896

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>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0489B03
          Length = 150381

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 160/201 (79%)
 Strand = Plus / Minus

                                                                          
Query: 287    tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcg 346
              |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| ||||| 
Sbjct: 109752 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccggcc 109693

                                                                          
Query: 347    cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
              ||||| ||| | ||||||||||  |||||    || || || ||||| | ||||||||| 
Sbjct: 109692 cggcacgagtaaggcagctccaggccggcctcctcggcggcgtcgaggacgtaggtgtcc 109633

                                                                          
Query: 407    tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacg 466
              || ||  |||| | ||||  |||  | |||||||| || | |||||||||||||||||||
Sbjct: 109632 tcgggcacctcgagctcgctctccgcgccgtccggcccgatgagcttcaccttgtgcacg 109573

                                   
Query: 467    gcagtcgcagacaccctgaac 487
              || | ||| ||| ||||||||
Sbjct: 109572 gccgccgcggacgccctgaac 109552

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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0679C12
          Length = 153666

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 160/201 (79%)
 Strand = Plus / Minus

                                                                         
Query: 287   tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcg 346
             |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| ||||| 
Sbjct: 72085 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccggcc 72026

                                                                         
Query: 347   cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
             ||||| ||| | ||||||||||  |||||    || || || ||||| | ||||||||| 
Sbjct: 72025 cggcacgagtaaggcagctccaggccggcctcctcggcggcgtcgaggacgtaggtgtcc 71966

                                                                         
Query: 407   tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacg 466
             || ||  |||| | ||||  |||  | |||||||| || | |||||||||||||||||||
Sbjct: 71965 tcgggcacctcgagctcgctctccgcgccgtccggcccgatgagcttcaccttgtgcacg 71906

                                  
Query: 467   gcagtcgcagacaccctgaac 487
             || | ||| ||| ||||||||
Sbjct: 71905 gccgccgcggacgccctgaac 71885

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>dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G06, full
           insert sequence
          Length = 3419

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 160/201 (79%)
 Strand = Plus / Plus

                                                                       
Query: 287 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcg 346
           |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| ||||| 
Sbjct: 499 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccggcc 558

                                                                       
Query: 347 cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
           ||||| ||| | ||||||||||  |||||    || || || ||||| | ||||||||| 
Sbjct: 559 cggcacgagtaaggcagctccaggccggcctcctcggcggcgtcgaggacgtaggtgtcc 618

                                                                       
Query: 407 tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacg 466
           || ||  |||| | ||||  |||  | |||||||| || | |||||||||||||||||||
Sbjct: 619 tcgggcacctcgagctcgctctccgcgccgtccggcccgatgagcttcaccttgtgcacg 678

                                
Query: 467 gcagtcgcagacaccctgaac 487
           || | ||| ||| ||||||||
Sbjct: 679 gccgccgcggacgccctgaac 699

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>dbj|AK069860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035H08, full
           insert sequence
          Length = 911

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 160/201 (79%)
 Strand = Plus / Minus

                                                                       
Query: 287 tccgactgatcgacctccccggtggtcatcttgcccgcgcaagtggagcacgatccggcg 346
           |||||||| |||||||| |||| || || |||||| ||||| ||||||||||| ||||| 
Sbjct: 682 tccgactggtcgacctcgccggaggccagcttgccggcgcacgtggagcacgagccggcc 623

                                                                       
Query: 347 cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
           ||||| ||| | ||||||||||  |||||    || || || ||||| | ||||||||| 
Sbjct: 622 cggcacgagtaaggcagctccaggccggcctcctcggcggcgtcgaggacgtaggtgtcc 563

                                                                       
Query: 407 tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgtgcacg 466
           || ||  |||| | ||||  |||  | |||||||| || | |||||||||||||||||||
Sbjct: 562 tcgggcacctcgagctcgctctccgcgccgtccggcccgatgagcttcaccttgtgcacg 503

                                
Query: 467 gcagtcgcagacaccctgaac 487
           || | ||| ||| ||||||||
Sbjct: 502 gccgccgcggacgccctgaac 482

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>gb|BT016313.1| Zea mays clone Contig146 mRNA sequence
          Length = 926

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 347 cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
           ||||| ||| |||||| |||||| |||||||| || ||||| || || ||||||| ||| 
Sbjct: 463 cggcacgagtatggcaactccacaccggcagtctcggctgcgtcaaggatgtaggcgtcg 404

                                                                  
Query: 407 tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgt 461
           || || || ||||||||||||||||| || || || || || |||||||||||||
Sbjct: 403 tctggagcatcaaactcgtgctcttcaccttcaggcccgacaagcttcaccttgt 349

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>gb|AY104148.1| Zea mays PCO088579 mRNA sequence
          Length = 1090

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 347 cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
           ||||| ||| |||||| |||||| |||||||| || ||||| || || ||||||| ||| 
Sbjct: 605 cggcacgagtatggcaactccacaccggcagtctcggctgcgtcaaggatgtaggcgtcg 546

                                                                  
Query: 407 tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgt 461
           || || || ||||||||||||||||| || || || || || |||||||||||||
Sbjct: 545 tctggagcatcaaactcgtgctcttcaccttcaggcccgacaagcttcaccttgt 491

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>gb|M73831.1|MZEFD3 Maize ferredoxin III (Fd) isoprotein mRNA, pFD3
          Length = 705

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 347 cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
           ||||| ||| |||||| |||||| |||||||| || || || || || ||||||| ||| 
Sbjct: 298 cggcacgagtatggcaactccacaccggcagtctcggcagcgtcaaggatgtaggcgtcg 239

                                                                  
Query: 407 tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgt 461
           || || || ||||||||||||||||| || || || || || |||||||||||||
Sbjct: 238 tctggagcatcaaactcgtgctcttcaccttcaggcccgacaagcttcaccttgt 184

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>dbj|AB001387.1| Maize DNA for Fd III, complete cds
          Length = 5179

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 347  cggcaagagaatggcagctccaccccggcagtttcagctgcctcgagaatgtaggtgtct 406
            ||||| ||| |||||| |||||| |||||||| || || || || || ||||||| ||| 
Sbjct: 4472 cggcacgagtatggcaactccacaccggcagtctcggcagcgtcaaggatgtaggcgtcg 4413

                                                                   
Query: 407  tcaggggcctcaaactcgtgctcttccccgtccgggcctacgagcttcaccttgt 461
            || || || ||||||||||||||||| || || || || || |||||||||||||
Sbjct: 4412 tctggagcatcaaactcgtgctcttcaccttcaggcccgacaagcttcaccttgt 4358

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>gb|AC122752.10| Mus musculus chromosome 8, clone RP24-358A6, complete sequence
          Length = 155477

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   ggcctcaaactcgtgctcttcc 433
             ||||||||||||||||||||||
Sbjct: 44833 ggcctcaaactcgtgctcttcc 44854

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>dbj|AK140078.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230207F24
            product:unclassifiable, full insert sequence
          Length = 3703

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 412  ggcctcaaactcgtgctcttcc 433
            ||||||||||||||||||||||
Sbjct: 1284 ggcctcaaactcgtgctcttcc 1263

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>dbj|AK041938.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630048B09 product:unclassifiable, full
            insert sequence
          Length = 2393

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 412  ggcctcaaactcgtgctcttcc 433
            ||||||||||||||||||||||
Sbjct: 1164 ggcctcaaactcgtgctcttcc 1185

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>gb|AE004690.1| Pseudomonas aeruginosa PAO1, section 251 of 529 of the complete
            genome
          Length = 10325

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 540  tgaaggaaggggtcctgatcgc 561
            ||||||||||||||||||||||
Sbjct: 4432 tgaaggaaggggtcctgatcgc 4411

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>ref|XM_516818.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC39662
           (LOC460780), mRNA
          Length = 1795

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 407 tcaggggcctcaaactcgtgctcttcccc 435
           ||||||||||| ||||| |||||||||||
Sbjct: 275 tcaggggcctccaactcctgctcttcccc 247

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>ref|XM_470335.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 890

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 395 atgtaggtgtcttcaggggcctcaaactcgtgctctt 431
           ||||||||||| || || ||||| |||||||||||||
Sbjct: 395 atgtaggtgtcatccggagcctcgaactcgtgctctt 359

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 395      atgtaggtgtcttcaggggcctcaaactcgtgctctt 431
                ||||||||||| || || ||||| |||||||||||||
Sbjct: 34819969 atgtaggtgtcatccggagcctcgaactcgtgctctt 34819933

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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
             sequence
          Length = 164352

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 395   atgtaggtgtcttcaggggcctcaaactcgtgctctt 431
             ||||||||||| || || ||||| |||||||||||||
Sbjct: 42681 atgtaggtgtcatccggagcctcgaactcgtgctctt 42717

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>gb|BC036239.1| Homo sapiens chromosome 3 open reading frame 44, mRNA (cDNA clone
           MGC:39805 IMAGE:5297417), complete cds
          Length = 2067

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 407 tcaggggcctcaaactcgtgctcttcccc 435
           ||||||||||| ||||| |||||||||||
Sbjct: 269 tcaggggcctccaactcctgctcttcccc 241

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>emb|Z82244.1|HS286B10 Human DNA sequence from clone CTA-286B10 on chromosome 22, complete
            sequence
          Length = 87869

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 631  cttgctcctctgggccttctc 651
            |||||||||||||||||||||
Sbjct: 1806 cttgctcctctgggccttctc 1786

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>emb|Z46944.1|CSNPHFDXN C.sinensis mRNA for non-photosynthetic ferredoxin
          Length = 690

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 380 tcagctgcctcgagaatgtaggtgtcttcaggggcctcaaactcgtgctcttc 432
           |||||||| ||||| |||||   ||||||  ||||||||||||| ||||||||
Sbjct: 327 tcagctgcatcgaggatgtactggtcttcctgggcctcaaactcatgctcttc 275

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>dbj|AK091958.1| Homo sapiens cDNA FLJ34639 fis, clone KIDNE2016371
          Length = 2569

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 631 cttgctcctctgggccttctc 651
           |||||||||||||||||||||
Sbjct: 199 cttgctcctctgggccttctc 179

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>dbj|AB183443.1| Rhodococcus sp. TKN46 gyrB gene for DNA gyrase subunit B, partial
           cds
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 451 cttcaccttgtgcacggcagtcgca 475
           |||||||||||||||||||| ||||
Sbjct: 390 cttcaccttgtgcacggcaggcgca 366

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>ref|NM_152394.3| Homo sapiens chromosome 3 open reading frame 44 (C3orf44), mRNA
          Length = 2067

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 407 tcaggggcctcaaactcgtgctcttcccc 435
           ||||||||||| ||||| |||||||||||
Sbjct: 269 tcaggggcctccaactcctgctcttcccc 241

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 395      atgtaggtgtcttcaggggcctcaaactcgtgctctt 431
                ||||||||||| || || ||||| |||||||||||||
Sbjct: 34910041 atgtaggtgtcatccggagcctcgaactcgtgctctt 34910005

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>gb|AY826849.1| Isochrysis galbana clone ISF1 chloroplast ferredoxin mRNA, partial
           cds; nuclear gene for chloroplast product
          Length = 764

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 251 ccctcgcccatctggttctcatcgaggaaggagccctccgactgatcga 299
           |||| |||||||||||  || |||||||| ||||| |||||||| ||||
Sbjct: 329 ccctggcccatctggtcgtcgtcgaggaacgagccgtccgactggtcga 281

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>gb|AC011317.23| Homo sapiens 3 BAC RP11-103G8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147097

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 407   tcaggggcctcaaactcgtgctcttcccc 435
             ||||||||||| ||||| |||||||||||
Sbjct: 45946 tcaggggcctccaactcctgctcttcccc 45974

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>dbj|AK121063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L21, full
           insert sequence
          Length = 857

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 395 atgtaggtgtcttcaggggcctcaaactcgtgctctt 431
           ||||||||||| || || ||||| |||||||||||||
Sbjct: 370 atgtaggtgtcatccggagcctcgaactcgtgctctt 334

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>ref|XM_472400.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 316 cttgcccgcgcaagtggagcacgatccggcgcggca 351
           |||||| ||||| ||||||||||  |||||||||||
Sbjct: 318 cttgccggcgcaggtggagcacgcgccggcgcggca 283

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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 134     gcagcttcaacaattgtgtcacag 157
               |||||||| |||||||||||||||
Sbjct: 1904662 gcagcttccacaattgtgtcacag 1904639

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>ref|XM_775945.1| PREDICTED: Strongylocentrotus purpuratus similar to CG7719-PA
           (LOC575551), mRNA
          Length = 2142

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 600 aggacactcctggagcagtg 619
           ||||||||||||||||||||
Sbjct: 23  aggacactcctggagcagtg 42

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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
              complete sequence
          Length = 143301

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 316    cttgcccgcgcaagtggagcacgatccggcgcggca 351
              |||||| ||||| ||||||||||  |||||||||||
Sbjct: 108527 cttgccggcgcaggtggagcacgcgccggcgcggca 108492

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>gb|AC084198.31| Homo sapiens 3 BAC RP11-454H13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194955

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 127    ccaccatgcagcttcaacaattgt 150
              ||||||||| ||||||||||||||
Sbjct: 148488 ccaccatgcggcttcaacaattgt 148511

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 316      cttgcccgcgcaagtggagcacgatccggcgcggca 351
                |||||| ||||| ||||||||||  |||||||||||
Sbjct: 20377894 cttgccggcgcaggtggagcacgcgccggcgcggca 20377859

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>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2,
              complete sequence
          Length = 194313

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     ttattgctcacaactcatat 44
              ||||||||||||||||||||
Sbjct: 158373 ttattgctcacaactcatat 158354

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>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete
             sequence. Sequence from clones T23A1, F5J6, MJB20
          Length = 76170

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttttacatcaattattgctc 33
             ||||||||||||||||||||
Sbjct: 20756 ttttacatcaattattgctc 20737

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>dbj|AK120232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043H21, full
           insert sequence
          Length = 835

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 316 cttgcccgcgcaagtggagcacgatccggcgcggca 351
           |||||| ||||| ||||||||||  |||||||||||
Sbjct: 513 cttgccggcgcaggtggagcacgcgccggcgcggca 478

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>dbj|AK062016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-F06, full
           insert sequence
          Length = 752

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 316 cttgcccgcgcaagtggagcacgatccggcgcggca 351
           |||||| ||||| ||||||||||  |||||||||||
Sbjct: 476 cttgccggcgcaggtggagcacgcgccggcgcggca 441

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>gb|AY111751.1| Zea mays CL56157_1 mRNA sequence
          Length = 424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 316 cttgcccgcgcaagtggagcacgatccggcgcggca 351
           |||||| ||||| ||||||||||  |||||||||||
Sbjct: 295 cttgccggcgcacgtggagcacgcgccggcgcggca 330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,782,906
Number of Sequences: 3902068
Number of extensions: 4782906
Number of successful extensions: 85594
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85361
Number of HSP's gapped (non-prelim): 225
length of query: 675
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 652
effective length of database: 17,143,297,704
effective search space: 11177430103008
effective search space used: 11177430103008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result