>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  110 bits (274), Expect = 3e-24
 Identities = 66/137 (48%), Positives = 79/137 (57%), Gaps = 11/137 (8%)
 Frame = -3

Query: 524 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSXXXXXXXXXXXXXXXXLTV- 375
           MA+++++S  + PT          LPSL+R  SSF VV S                + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 374 -DIDANGRKVGKKGVYQFVDKYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAVTXX 198
             +DA+GRK   KGVYQ+VDKYGANV GYS IY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120

Query: 197 XXXXXXXXLVYNTSALA 147
                   LVYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  110 bits (274), Expect = 3e-24
 Identities = 66/137 (48%), Positives = 79/137 (57%), Gaps = 11/137 (8%)
 Frame = -3

Query: 524 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSXXXXXXXXXXXXXXXXLTV- 375
           MA+++++S  + PT          LPSL+R  SSF VV S                + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 374 -DIDANGRKVGKKGVYQFVDKYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAVTXX 198
             +DA+GRK   KGVYQ+VDKYGANV GYS IY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120

Query: 197 XXXXXXXXLVYNTSALA 147
                   LVYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  109 bits (272), Expect = 5e-24
 Identities = 67/139 (48%), Positives = 80/139 (57%), Gaps = 13/139 (9%)
 Frame = -3

Query: 524 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSXXXXXXXXXXXXXXXXLT 378
           MA S+++S  + P+S           LPSLSR  +SF V  S                + 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 377 V--DIDANGRKVGKKGVYQFVDKYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAVT 204
           +   +D++GRK   KGVYQFVDKYGANV GYS IY  EEW+ +GD YAGGTTGLLIWAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

Query: 203 XXXXXXXXXXLVYNTSALA 147
                     LVYNTSALA
Sbjct: 121 LAGLLAGGALLVYNTSALA 139

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  105 bits (261), Expect = 1e-22
 Identities = 60/117 (51%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
 Frame = -3

Query: 491 APTSLPSLSRRGSSFAVVCSXXXXXXXXXXXXXXXXLTV--DIDANGRKVGKKGVYQFVD 318
           A   LPSL+R  SSF V  S                +++   +DA+GRK   KGVYQFVD
Sbjct: 19  AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78

Query: 317 KYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 147
           KYGANV GYS IY  ++WS SGD Y GGTTGL IWAVT          LV+NTSALA
Sbjct: 79  KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 49/75 (65%), Positives = 53/75 (70%)
 Frame = -3

Query: 371 IDANGRKVGKKGVYQFVDKYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 192
           +DA+GR    KGVYQF DKYGANV GYS IYTPEEWS SGD Y GG TGL +WAVT    
Sbjct: 63  VDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGI 122

Query: 191 XXXXXXLVYNTSALA 147
                 LVY+TSALA
Sbjct: 123 LLGGALLVYSTSALA 137

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 62/139 (44%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
 Frame = -3

Query: 524 MAASMITSPIV-----------APTSLPSLSRRGSSFAVVCSXXXXXXXXXXXXXXXXLT 378
           MAAS++ S +            A   LPSL+R   SF +V S                + 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 377 V--DIDANGRKVGKKGVYQFVDKYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAVT 204
           +   +DA+GRK    GVY++VDKYGANV GYS IY   EWS SGD Y GG TGL IWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 203 XXXXXXXXXXLVYNTSALA 147
                     LVYNTSALA
Sbjct: 121 LAGILAGGALLVYNTSALA 139

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 63/140 (45%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
 Frame = -3

Query: 524 MAASMITSPI-----------VAPTSLPSLSRRG-SSFAVVCSXXXXXXXXXXXXXXXXL 381
           MAAS++ S +           ++   LPSL+R   SSF +V S                +
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 380 TV--DIDANGRKVGKKGVYQFVDKYGANVXGYSXIYTPEEWSESGDRYAGGTTGLLIWAV 207
            +   +DA+GRK    GVY+FVDKYGANV GYS IY  +EWS SGD Y GG TGL IWAV
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 206 TXXXXXXXXXXLVYNTSALA 147
           T          LVYNTSALA
Sbjct: 121 TLAGILAGGALLVYNTSALA 140

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 337 PFLPTFLPLASMSTVKPPPS-PRGLXTLIFLPPLQTTAKEEPRRER 471
           P+LP   P  S   + PPPS P G  T I   PL++ AK +   ++
Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = +1

Query: 295  PXTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLXTLIFLPPLQTT 444
            P T  P  +T   TP         PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951



 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 295  PXTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLXTLIFLPPLQTT 444
            P T+    + N   P  PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 358 PLASMSTVKPPPSPRGLXTLIFLPPLQTTAKEEPRRERDG 477
           P+    T KPP  P G       PP Q T  E+P  E+ G
Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,279,528
Number of Sequences: 219361
Number of extensions: 739314
Number of successful extensions: 2369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2360
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)