ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_053388.1| Rattus norvegicus gap junction membrane channel... 42 1.0
2gb|BC038934.1| Homo sapiens gap junction protein, beta 6 (connex... 42 1.0
3gb|AC119952.12| Mus musculus chromosome 14, clone RP24-448F1, co... 42 1.0
4emb|AL355984.11| Human DNA sequence from clone RP11-501K3 on chr... 42 1.0
5ref|XM_777385.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.0
6emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 42 1.0
7gb|BC063762.1| Mus musculus gap junction membrane channel protei... 42 1.0
8dbj|AK075247.1| Homo sapiens cDNA FLJ90766 fis, clone THYRO10006... 42 1.0
9dbj|AK134617.1| Mus musculus adult male medulla oblongata cDNA, ... 42 1.0
10dbj|AK141610.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 42 1.0
11gb|BC013811.1| Mus musculus gap junction membrane channel protei... 42 1.0
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
13ref|NM_006783.2| Homo sapiens gap junction protein, beta 6 (conn... 42 1.0
14ref|NM_001010937.1| Mus musculus gap junction membrane channel p... 42 1.0
15ref|NM_008128.3| Mus musculus gap junction membrane channel prot... 42 1.0
16gb|AF170284.1|AF170284 Rattus norvegicus connexin 30 mRNA, compl... 42 1.0
17gb|BC078753.1| Rattus norvegicus gap junction membrane channel p... 42 1.0
18gb|BC016507.1| Mus musculus gap junction membrane channel protei... 42 1.0
19ref|XM_473891.1| Oryza sativa (japonica cultivar-group), predic... 40 4.1
20gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 4.1
21ref|NM_207749.1| Eremothecium gossypii AAL146Wp (AAL146W), mRNA 40 4.1 
>ref|NM_053388.1| Rattus norvegicus gap junction membrane channel protein beta 6
            (Gjb6), mRNA
          Length = 1752

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1372 gttctgactttgaatttatat 1392
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>gb|BC038934.1| Homo sapiens gap junction protein, beta 6 (connexin 30), mRNA (cDNA
            clone MGC:45195 IMAGE:5196769), complete cds
          Length = 1805

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1413 gttctgactttgaatttatat 1433
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>gb|AC119952.12| Mus musculus chromosome 14, clone RP24-448F1, complete sequence
          Length = 181695

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   gttctgactttgaatttatat 310
             |||||||||||||||||||||
Sbjct: 53483 gttctgactttgaatttatat 53503
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>emb|AL355984.11| Human DNA sequence from clone RP11-501K3 on chromosome 13 Contains the
             GJB6 gene for gap junction protein, beta 6 (connexin 30)
             and 2 CpG islands, complete sequence
          Length = 160536

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   gttctgactttgaatttatat 310
             |||||||||||||||||||||
Sbjct: 20156 gttctgactttgaatttatat 20136
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>ref|XM_777385.1| PREDICTED: Strongylocentrotus purpuratus similar to guanine
            nucleotide exchange factor p532 (LOC577136), mRNA
          Length = 3834

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 206  gatgctgtcaaacagctatac 226
            |||||||||||||||||||||
Sbjct: 2606 gatgctgtcaaacagctatac 2586
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
              complete sequence
          Length = 133279

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 278    cgcacaccnatggttctgactttgaatttata 309
              |||||||| |  ||||||||||||||||||||
Sbjct: 116017 cgcacaccgacagttctgactttgaatttata 116048
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>gb|BC063762.1| Mus musculus gap junction membrane channel protein beta 6, transcript
            variant 1, mRNA (cDNA clone MGC:70077 IMAGE:30245263),
            complete cds
          Length = 1962

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1571 gttctgactttgaatttatat 1591
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>dbj|AK075247.1| Homo sapiens cDNA FLJ90766 fis, clone THYRO1000678, highly similar to
            Gap junction beta-6 protein
          Length = 1970

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1618 gttctgactttgaatttatat 1638
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>dbj|AK134617.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330501L16 product:gap junction
            membrane channel protein beta 6, full insert sequence
          Length = 2104

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1756 gttctgactttgaatttatat 1776
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>dbj|AK141610.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630043M24 product:gap junction membrane
            channel protein beta 6, full insert sequence
          Length = 1813

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1757 gttctgactttgaatttatat 1777
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>gb|BC013811.1| Mus musculus gap junction membrane channel protein beta 6, transcript
            variant 2, mRNA (cDNA clone MGC:19410 IMAGE:3483477),
            complete cds
          Length = 1786

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1424 gttctgactttgaatttatat 1444
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 278      cgcacaccnatggttctgactttgaatttata 309
                |||||||| |  ||||||||||||||||||||
Sbjct: 31294415 cgcacaccgacagttctgactttgaatttata 31294446
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>ref|NM_006783.2| Homo sapiens gap junction protein, beta 6 (connexin 30) (GJB6), mRNA
          Length = 1805

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1413 gttctgactttgaatttatat 1433
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>ref|NM_001010937.1| Mus musculus gap junction membrane channel protein beta 6 (Gjb6),
            transcript variant 2, mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1723 gttctgactttgaatttatat 1743
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>ref|NM_008128.3| Mus musculus gap junction membrane channel protein beta 6 (Gjb6),
            transcript variant 1, mRNA
          Length = 1962

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1571 gttctgactttgaatttatat 1591
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>gb|AF170284.1|AF170284 Rattus norvegicus connexin 30 mRNA, complete cds
          Length = 1752

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1372 gttctgactttgaatttatat 1392
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>gb|BC078753.1| Rattus norvegicus gap junction membrane channel protein beta 6, mRNA
            (cDNA clone MGC:93246 IMAGE:7132296), complete cds
          Length = 1741

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1369 gttctgactttgaatttatat 1389
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>gb|BC016507.1| Mus musculus gap junction membrane channel protein beta 6, transcript
            variant 2, mRNA (cDNA clone MGC:7187 IMAGE:3481872),
            complete cds
          Length = 1810

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  gttctgactttgaatttatat 310
            |||||||||||||||||||||
Sbjct: 1432 gttctgactttgaatttatat 1452
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>ref|XM_473891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 gttctgactttgaatttata 309
           ||||||||||||||||||||
Sbjct: 791 gttctgactttgaatttata 772
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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
             complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   aaacttatttatcgatgatc 260
             ||||||||||||||||||||
Sbjct: 96501 aaacttatttatcgatgatc 96520
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>ref|NM_207749.1| Eremothecium gossypii AAL146Wp (AAL146W), mRNA
          Length = 5703

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  aaacttatttatcgatgatc 260
            ||||||||||||||||||||
Sbjct: 3993 aaacttatttatcgatgatc 4012


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,384,357
Number of Sequences: 3902068
Number of extensions: 1384357
Number of successful extensions: 22012
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21984
Number of HSP's gapped (non-prelim): 28
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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