ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478942.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 363 bits (183), Expect = 4e-97 Identities = 321/367 (87%) Strand = Plus / Minus Query: 176 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctgaacgcctaccg 235 ||||||| || || ||||||||||||||||| |||| |||||||||||||||||| | Sbjct: 992 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctgaacgccacatg 933 Query: 236 accagagccagaggtcaatgtcaatgctcagaagctgtttcccaaactttttgttgatga 295 |||||||||| || || |||||||||||||||||||| || |||||||| |||||||||| Sbjct: 932 accagagccatagatcgatgtcaatgctcagaagctgctttccaaacttcttgttgatga 873 Query: 296 gctccctcattttttcaacggcatgaacagaacaagcacgaatctccacttcctcttcgc 355 |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct: 872 gctctctcattttttccacggcatatacagaacaagcacgaatctccacttcctcttcac 813 Query: 356 ttccgggcacaatctcgcggttcgagtcgatggagcaacataggctcgactcgtatttca 415 |||| ||||||||||| | | |||| || || |||||| ||| | | || | ||||||| Sbjct: 812 ttccaggcacaatctcactgctcgaatcaattgagcaagataagttggagccatatttca 753 Query: 416 gtatgccaagctccctcagcacagcagggacaatatagtcggcaaatatggtgatggact 475 |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct: 752 gtatgccaagctccctcaagacagcaggaacaatatagtctgcaaatatggtgatggact 693 Query: 476 taatgtcgtcgaactgtccatagttttcccccttgaaagcaccccacaaatcagcaacaa 535 | ||||||| ||||| |||||||||| ||||| ||||||||||||| ||||||||||| Sbjct: 692 tgatgtcgtggaactcgccatagttttgtcccttaaaagcaccccacagatcagcaacaa 633 Query: 536 atatctg 542 ||||||| Sbjct: 632 atatctg 626
>dbj|AK103183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121K01, full insert sequence Length = 1424 Score = 363 bits (183), Expect = 4e-97 Identities = 321/367 (87%) Strand = Plus / Minus Query: 176 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctgaacgcctaccg 235 ||||||| || || ||||||||||||||||| |||| |||||||||||||||||| | Sbjct: 992 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctgaacgccacatg 933 Query: 236 accagagccagaggtcaatgtcaatgctcagaagctgtttcccaaactttttgttgatga 295 |||||||||| || || |||||||||||||||||||| || |||||||| |||||||||| Sbjct: 932 accagagccatagatcgatgtcaatgctcagaagctgctttccaaacttcttgttgatga 873 Query: 296 gctccctcattttttcaacggcatgaacagaacaagcacgaatctccacttcctcttcgc 355 |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct: 872 gctctctcattttttccacggcatatacagaacaagcacgaatctccacttcctcttcac 813 Query: 356 ttccgggcacaatctcgcggttcgagtcgatggagcaacataggctcgactcgtatttca 415 |||| ||||||||||| | | |||| || || |||||| ||| | | || | ||||||| Sbjct: 812 ttccaggcacaatctcactgctcgaatcaattgagcaagataagttggagccatatttca 753 Query: 416 gtatgccaagctccctcagcacagcagggacaatatagtcggcaaatatggtgatggact 475 |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct: 752 gtatgccaagctccctcaagacagcaggaacaatatagtctgcaaatatggtgatggact 693 Query: 476 taatgtcgtcgaactgtccatagttttcccccttgaaagcaccccacaaatcagcaacaa 535 | ||||||| ||||| |||||||||| ||||| ||||||||||||| ||||||||||| Sbjct: 692 tgatgtcgtggaactcgccatagttttgtcccttaaaagcaccccacagatcagcaacaa 633 Query: 536 atatctg 542 ||||||| Sbjct: 632 atatctg 626
>dbj|AK070635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058H18, full insert sequence Length = 1623 Score = 363 bits (183), Expect = 4e-97 Identities = 321/367 (87%) Strand = Plus / Minus Query: 176 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctgaacgcctaccg 235 ||||||| || || ||||||||||||||||| |||| |||||||||||||||||| | Sbjct: 1278 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctgaacgccacatg 1219 Query: 236 accagagccagaggtcaatgtcaatgctcagaagctgtttcccaaactttttgttgatga 295 |||||||||| || || |||||||||||||||||||| || |||||||| |||||||||| Sbjct: 1218 accagagccatagatcgatgtcaatgctcagaagctgctttccaaacttcttgttgatga 1159 Query: 296 gctccctcattttttcaacggcatgaacagaacaagcacgaatctccacttcctcttcgc 355 |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct: 1158 gctctctcattttttccacggcatatacagaacaagcacgaatctccacttcctcttcac 1099 Query: 356 ttccgggcacaatctcgcggttcgagtcgatggagcaacataggctcgactcgtatttca 415 |||| ||||||||||| | | |||| || || |||||| ||| | | || | ||||||| Sbjct: 1098 ttccaggcacaatctcactgctcgaatcaattgagcaagataagttggagccatatttca 1039 Query: 416 gtatgccaagctccctcagcacagcagggacaatatagtcggcaaatatggtgatggact 475 |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct: 1038 gtatgccaagctccctcaagacagcaggaacaatatagtctgcaaatatggtgatggact 979 Query: 476 taatgtcgtcgaactgtccatagttttcccccttgaaagcaccccacaaatcagcaacaa 535 | ||||||| ||||| |||||||||| ||||| ||||||||||||| ||||||||||| Sbjct: 978 tgatgtcgtggaactcgccatagttttgtcccttaaaagcaccccacagatcagcaacaa 919 Query: 536 atatctg 542 ||||||| Sbjct: 918 atatctg 912
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 274 bits (138), Expect = 3e-70 Identities = 234/266 (87%) Strand = Plus / Minus Query: 277 ccaaactttttgttgatgagctccctcattttttcaacggcatgaacagaacaagcacga 336 |||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct: 23935294 ccaaacttcttgttgatgagctctctcattttttccacggcatatacagaacaagcacga 23935235 Query: 337 atctccacttcctcttcgcttccgggcacaatctcgcggttcgagtcgatggagcaacat 396 ||||||||||||||||| ||||| ||||||||||| | | |||| || || |||||| || Sbjct: 23935234 atctccacttcctcttcacttccaggcacaatctcactgctcgaatcaattgagcaagat 23935175 Query: 397 aggctcgactcgtatttcagtatgccaagctccctcagcacagcagggacaatatagtcg 456 | | | || | ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 23935174 aagttggagccatatttcagtatgccaagctccctcaagacagcaggaacaatatagtct 23935115 Query: 457 gcaaatatggtgatggacttaatgtcgtcgaactgtccatagttttcccccttgaaagca 516 |||||||||||||||||||| ||||||| ||||| |||||||||| ||||| |||||| Sbjct: 23935114 gcaaatatggtgatggacttgatgtcgtggaactcgccatagttttgtcccttaaaagca 23935055 Query: 517 ccccacaaatcagcaacaaatatctg 542 ||||||| |||||||||||||||||| Sbjct: 23935054 ccccacagatcagcaacaaatatctg 23935029 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 176 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctgaacgcctaccg 235 ||||||| || || ||||||||||||||||| |||| |||||||||||||||||| | Sbjct: 23935931 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctgaacgccacatg 23935872 Query: 236 accagagccagaggtcaatgtcaatgctcagaagctg 272 |||||||||| || || |||||||||||||||||||| Sbjct: 23935871 accagagccatagatcgatgtcaatgctcagaagctg 23935835
>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07 Length = 142850 Score = 274 bits (138), Expect = 3e-70 Identities = 234/266 (87%) Strand = Plus / Minus Query: 277 ccaaactttttgttgatgagctccctcattttttcaacggcatgaacagaacaagcacga 336 |||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct: 90221 ccaaacttcttgttgatgagctctctcattttttccacggcatatacagaacaagcacga 90162 Query: 337 atctccacttcctcttcgcttccgggcacaatctcgcggttcgagtcgatggagcaacat 396 ||||||||||||||||| ||||| ||||||||||| | | |||| || || |||||| || Sbjct: 90161 atctccacttcctcttcacttccaggcacaatctcactgctcgaatcaattgagcaagat 90102 Query: 397 aggctcgactcgtatttcagtatgccaagctccctcagcacagcagggacaatatagtcg 456 | | | || | ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 90101 aagttggagccatatttcagtatgccaagctccctcaagacagcaggaacaatatagtct 90042 Query: 457 gcaaatatggtgatggacttaatgtcgtcgaactgtccatagttttcccccttgaaagca 516 |||||||||||||||||||| ||||||| ||||| |||||||||| ||||| |||||| Sbjct: 90041 gcaaatatggtgatggacttgatgtcgtggaactcgccatagttttgtcccttaaaagca 89982 Query: 517 ccccacaaatcagcaacaaatatctg 542 ||||||| |||||||||||||||||| Sbjct: 89981 ccccacagatcagcaacaaatatctg 89956 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 176 ctcagtagtaaatggagagggtgcggtgatgagacagcgccatgttctgaacgcctaccg 235 ||||||| || || ||||||||||||||||| |||| |||||||||||||||||| | Sbjct: 90858 ctcagtaatatattgagagggtgcggtgatgtgacaacgccatgttctgaacgccacatg 90799 Query: 236 accagagccagaggtcaatgtcaatgctcagaagctg 272 |||||||||| || || |||||||||||||||||||| Sbjct: 90798 accagagccatagatcgatgtcaatgctcagaagctg 90762
>gb|AC113416.2| Homo sapiens chromosome 5 clone RP11-560F8, complete sequence Length = 190848 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 165 gctggcgtagcctcagtagtaaatggaga 193 |||||| |||||||||||||||||||||| Sbjct: 10833 gctggcatagcctcagtagtaaatggaga 10861
>gb|AC113380.2| Homo sapiens chromosome 5 clone RP11-304B20, complete sequence Length = 143534 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 165 gctggcgtagcctcagtagtaaatggaga 193 |||||| |||||||||||||||||||||| Sbjct: 31732 gctggcatagcctcagtagtaaatggaga 31704
>ref|XM_657580.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5068.2), mRNA Length = 1044 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cttcctcttcgcttccgggc 363 |||||||||||||||||||| Sbjct: 103 cttcctcttcgcttccgggc 84
>emb|CR388194.8| Zebrafish DNA sequence from clone DKEY-20H20 in linkage group 1, complete sequence Length = 75231 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ttgttgatgagctccctcat 305 |||||||||||||||||||| Sbjct: 68095 ttgttgatgagctccctcat 68114
>gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, complete sequence Length = 205015 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccctcagcacagcagggaca 447 |||||||||||||||||||| Sbjct: 2521 ccctcagcacagcagggaca 2502
>dbj|AK035272.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530008B08 product:procollagen, type VI, alpha 2, full insert sequence Length = 2729 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccctcagcacagcagggaca 447 |||||||||||||||||||| Sbjct: 1068 ccctcagcacagcagggaca 1049
>gb|AF355461.1|AF355461 Pseudomonas lemoignei adenine methyltransferase M.PleI (pleIM) and restriction endonuclease R.PleI (pleIR) genes, complete cds Length = 2550 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cccaaactttttgttgatga 295 |||||||||||||||||||| Sbjct: 1756 cccaaactttttgttgatga 1775
>dbj|AK044870.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130009B12 product:procollagen, type VI, alpha 2, full insert sequence Length = 4287 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccctcagcacagcagggaca 447 |||||||||||||||||||| Sbjct: 3252 ccctcagcacagcagggaca 3233
>gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197426 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ccctcagcacagcagggaca 447 |||||||||||||||||||| Sbjct: 117237 ccctcagcacagcagggaca 117256
>emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in linkage group 1, complete sequence Length = 170040 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ttgttgatgagctccctcat 305 |||||||||||||||||||| Sbjct: 132106 ttgttgatgagctccctcat 132125
>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE Length = 132108 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gagagggtgcggtgatgaga 209 |||||||||||||||||||| Sbjct: 60366 gagagggtgcggtgatgaga 60385 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,814,686 Number of Sequences: 3902068 Number of extensions: 4814686 Number of successful extensions: 88341 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88270 Number of HSP's gapped (non-prelim): 61 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
