Clone Name | rbasd11g19 |
---|---|
Clone Library Name | barley_pub |
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene Length = 1154 Score = 900 bits (454), Expect = 0.0 Identities = 482/489 (98%), Gaps = 2/489 (0%) Strand = Plus / Minus Query: 1 atctttaatat-aaggcataatgcc-agcaataaactnatacacaaagtgcccgtaataa 58 ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 1147 atctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgcccgtaataa 1088 Query: 59 taagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaagcccgtat 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1087 taagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaagcccgtat 1028 Query: 119 acccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaaga 178 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1027 acccaaactgaacacaagcatccgtcacctaacggacttcacagaccggaccttcaaaga 968 Query: 179 cgatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 238 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 967 cgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacacacgccaac 908 Query: 239 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 907 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 848 Query: 299 tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagc 788 Query: 359 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 787 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcc 728 Query: 419 tcggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 727 tcggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcg 668 Query: 479 gcagcgtcc 487 ||||||||| Sbjct: 667 gcagcgtcc 659
>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds Length = 2254 Score = 611 bits (308), Expect = e-172 Identities = 308/308 (100%) Strand = Plus / Minus Query: 180 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187 Query: 240 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 2127 Query: 300 gctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagct 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 gctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagct 2067 Query: 360 tgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcct 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2066 tgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcct 2007 Query: 420 cggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcgg 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2006 cggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcgg 1947 Query: 480 cagcgtcc 487 |||||||| Sbjct: 1946 cagcgtcc 1939
>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA, complete cds Length = 1242 Score = 478 bits (241), Expect = e-132 Identities = 341/369 (92%), Gaps = 4/369 (1%) Strand = Plus / Minus Query: 121 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 179 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978 Query: 180 gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 238 |||||| |||||| | |||||||| |||||| | |||||||||||| |||||||||||| Sbjct: 977 gatcaacccctcccaccttgacaccaacttaa-cgtaaagcaaacacaacacacgccaac 919 Query: 239 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 298 |||| ||| |||||||||| | |||||||||| ||||||||||||||||| ||||||||| Sbjct: 918 aattcaatcgaggtccggtcacgagtctcggg-cacggcggcgatcaagcgctgggcttg 860 Query: 299 tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagc 358 |||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 859 tgctcgcctgcagcggcggcggccttgtcctcctcccctgtcttgtggtaaccaggcagc 800 Query: 359 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcc 418 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 799 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtcagggctgctcacctcc 740 Query: 419 tcggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcg 478 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 739 tcggcggctggcgccggcgcgtgcactggtgctggagcagcgtgcgtgacgggcaccgga 680 Query: 479 gcagcgtcc 487 ||||||||| Sbjct: 679 gcagcgtcc 671 Score = 71.9 bits (36), Expect = 2e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 55 ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 110 |||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1082 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1028
>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds Length = 808 Score = 466 bits (235), Expect = e-128 Identities = 241/243 (99%) Strand = Plus / Minus Query: 245 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 808 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 749 Query: 305 cctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagcttgtcc 364 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 748 cctgaaggggcggcggccttgtcctcctcctctgtcttgtggtaaccgggcagcttgtcc 689 Query: 365 atgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcctcggcg 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 atgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcctcggcg 629 Query: 425 gccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcggcagcg 484 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 628 gccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtggcgggcaccgcggcagcg 569 Query: 485 tcc 487 ||| Sbjct: 568 tcc 566
>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete cds Length = 1136 Score = 462 bits (233), Expect = e-127 Identities = 338/369 (91%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 121 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 179 |||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979 Query: 180 gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 238 |||||| |||||| | |||||||| ||||| || |||||||||||| |||||||||||| Sbjct: 978 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919 Query: 239 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 298 |||| ||| |||||||||| | | |||||||| ||||||||||||||||| ||||||||| Sbjct: 918 aattcaatcgaggtccggtcacgggtctcggg-cacggcggcgatcaagcgctgggcttg 860 Query: 299 tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagc 358 |||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 859 tgctcgcctgtagcggcggcggccttgtcctcctcccctgtcttgtggtaaccaggcagc 800 Query: 359 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcc 418 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 799 ttgtccatgatcttgcccagcaggcccttcttctccttcgcgtcagggctgctcacctcc 740 Query: 419 tcggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcg 478 |||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 739 tcgggggccggcaccggcgcgtgcactggtgctggagcagcgtgcgtgacgggcaccgca 680 Query: 479 gcagcgtcc 487 ||||||||| Sbjct: 679 gcagcgtcc 671 Score = 67.9 bits (34), Expect = 3e-08 Identities = 96/112 (85%), Gaps = 10/112 (8%) Strand = Plus / Minus Query: 1 atctttaatat-aaggcataatgcc-agcaataaactnatacacaaagtgcccgtaataa 58 ||||||||||| ||||||||||||| |||||||||| |||||||| |||||| | Sbjct: 1132 atctttaatatcaaggcataatgcccagcaataaaccaatacacaa-gtgccc------a 1080 Query: 59 taagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 110 |||| ||| |||||| | |||||||||||||||||||||| ||||||||||| Sbjct: 1079 taagtaaacaaacttga-caacatccaggacctgactctgaaccaaactgaa 1029
>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA, complete cds Length = 1181 Score = 448 bits (226), Expect = e-123 Identities = 327/358 (91%), Gaps = 2/358 (0%) Strand = Plus / Minus Query: 129 aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 188 |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| || Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979 Query: 189 ctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 247 |||| | |||||||| ||||| || |||||||||||| |||||||||||||||| ||| Sbjct: 978 ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919 Query: 248 gaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcgcct 307 |||||||||| | | |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 918 gaggtccggtcacgggtctcggg-cacggcggcgatcaagcgctgggcttgtgctcgcct 860 Query: 308 gaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagcttgtccatg 367 | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 859 gtagcggcggcggccttgtcctcctcccctgtcttgtggtaaccaggcagcttgtccatg 800 Query: 368 atcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcctcggcggcc 427 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 799 atcttgcccagcaggcccttcttctccttcgcgtcagggctgctcacctcctcggcggcc 740 Query: 428 ggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcggcagcgt 485 ||||| ||||||||||| || |||||||||||||||||||||||| ||| ||||||| Sbjct: 739 ggcgccggcgcgtgcaccggtgctggagcagcgtgcgtgacgggcgccggagcagcgt 682 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 446 ggcgctggagcagcgtgcgtgacgggcaccgcggcagcgtcc 487 ||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 697 ggcgccggagcagcgtgcgtgacgggcaccgcagcagcgtcc 656 Score = 46.1 bits (23), Expect = 0.11 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 1 atctttaatat-aaggcataatgcc-agcaataaactnatacacaa 44 ||||||||||| ||||||||||||| |||||||||| |||||||| Sbjct: 1134 atctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089
>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence Length = 1130 Score = 400 bits (202), Expect = e-108 Identities = 331/369 (89%), Gaps = 10/369 (2%) Strand = Plus / Minus Query: 121 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 179 |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gac 951 Query: 180 gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 238 |||||| |||||| | |||||||| ||||| || |||||||||||| |||||||||||| Sbjct: 950 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891 Query: 239 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 298 |||| ||| ||| |||||| | |||||||||| |||||||||||| |||| ||||||||| Sbjct: 890 aattcaatcgagctccggtcacgagtctcggg-cacggcggcgattaagcgctgggcttg 832 Query: 299 tgctcgcctgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcagc 358 |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 831 tgctcgcctgcaggggcggcggccttgtcctcctcccctgtcttgtggtaaccaggcagc 772 Query: 359 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcc 418 |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||| Sbjct: 771 ttgtccatgatcttgcccagcaagcccttcttctccttcgcgtcagggctgctcacttcc 712 Query: 419 tcggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgcg 478 ||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| Sbjct: 711 tcggcggcc------ggcgcgtgcaccggtgctggggcagcgtgcgtgacgggcaccgca 658 Query: 479 gcagcgtcc 487 ||| ||||| Sbjct: 657 gcaacgtcc 649 Score = 75.8 bits (38), Expect = 1e-10 Identities = 97/112 (86%), Gaps = 10/112 (8%) Strand = Plus / Minus Query: 1 atctttaatat-aaggcataatgcc-agcaataaactnatacacaaagtgcccgtaataa 58 ||||||||||| ||||||||||||| |||||||||| |||||||| |||||| | Sbjct: 1103 atctttaatatcaaggcataatgcccagcaataaaccaatacacaa-gtgccc------a 1051 Query: 59 taagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 110 |||| ||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1050 taagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1000
>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene) Length = 1127 Score = 392 bits (198), Expect = e-106 Identities = 332/370 (89%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 121 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 179 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976 Query: 180 gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 238 |||||| |||||| | |||||||| |||||| | |||||||||||| |||||||||||| Sbjct: 975 gatcaacccctcccaccttgacaccaacttaa-cgtaaagcaaacacaacacacgccaac 917 Query: 239 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 298 |||| ||| | |||||||| | |||||||||| |||||||||| |||||| |||| ||| Sbjct: 916 aattcaatcggggtccggtcacgagtctcggg-cacggcggcgttcaagcgttgggattg 858 Query: 299 tgctcgcc-tgaaggggcggcggccttgtcctcctcccctgtcttgtggtaaccgggcag 357 |||||||| || || |||||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 857 tgctcgccctgcagcggcggcggacttgtcctcctcccctgtcttgtggtaaccaggcag 798 Query: 358 cttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctc 417 ||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||| Sbjct: 797 cttgtccatgatcttgcccagtaggcccttcttctccttcgggtcagggatggtcacctc 738 Query: 418 ctcggcggccggcgcaggcgcgtgcactggcgctggagcagcgtgcgtgacgggcaccgc 477 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 737 ctcggcggatggcgccggcgcgtgcactggtgctggagcagcgtgcgtgacgggcaccgg 678 Query: 478 ggcagcgtcc 487 ||||||||| Sbjct: 677 agcagcgtcc 668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 55 ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 110 |||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1080 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026
>gb|AY574032.1| Triticum aestivum dehydrin-like gene, partial sequence Length = 391 Score = 186 bits (94), Expect = 5e-44 Identities = 122/130 (93%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 359 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtccgggctgctcacctcc 418 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 390 ttgtccatgatcttgcccagtaggcccttcttctccttcgcgtcagggctgctcacctcc 331 Query: 419 tcggcggccggcgcaggcgcgtgc-actggcgctggagcagcgtgcgtgacgggcaccgc 477 |||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| ||| Sbjct: 330 tcggcggctggcgccggcgcgtgctactggtgctggagcagcgtgcgtgacgggcgccgg 271 Query: 478 ggcagcgtcc 487 ||||||||| Sbjct: 270 agcagcgtcc 261
>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible protein 1 mRNA, complete cds Length = 1315 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Minus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 918 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 859 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 858 atccgggctgctcacttcctc 838 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 734 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 689
>gb|AY786415.1| Oryza sativa (japonica cultivar-group) SK3-type dehydrin 1 (Dhn1) mRNA, complete cds Length = 1117 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Minus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 908 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 849 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 848 atccgggctgctcacttcctc 828 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 724 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 679
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 27184369 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 27184428 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 27184429 atccgggctgctcacttcctc 27184449 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Plus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 27184553 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 27184598
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 80818 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 80877 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 80878 atccgggctgctcacttcctc 80898 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Plus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 81002 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 81047
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 35040 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 35099 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 35100 atccgggctgctcacttcctc 35120 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Plus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 35224 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 35269
>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full insert sequence Length = 1292 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Minus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 930 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 871 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 870 atccgggctgctcacttcctc 850 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 746 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 701
>dbj|AB011367.1| Oryza sativa mRNA for LIP9, partial cds Length = 680 Score = 105 bits (53), Expect = 1e-19 Identities = 74/81 (91%) Strand = Plus / Minus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcgc 399 |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | Sbjct: 351 cttgtggtaaccgggcagtttctccatgatcttgcccagtatacccttcttctccttccc 292 Query: 400 gtccgggctgctcacctcctc 420 |||||||||||||| ||||| Sbjct: 291 atccgggctgctcacttcctc 271 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctcct 395 ||||||||||| ||| |||||||| | || | |||||||||||||| Sbjct: 167 ccgggcagcttctccttgatcttgtcgaggaagcccttcttctcct 122
>gb|AY105067.1| Zea mays PCO081051 mRNA sequence Length = 1398 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 339 tcttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttcttctccttcg 398 |||||||||| ||||| | ||||||||||||||||||||| | ||||||||||||||| Sbjct: 928 tcttgtggtagccgggtatcttgtccatgatcttgcccagcaagcccttcttctccttgc 869 Query: 399 cgtccgggctgctcac 414 | |||||||||||||| Sbjct: 868 catccgggctgctcac 853
>gb|BT019045.1| Zea mays clone Contig566.F mRNA sequence Length = 722 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 339 tcttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttctt 390 |||||||||| ||||| | ||||||||||||||||||||| | ||||||||| Sbjct: 353 tcttgtggtagccgggtatcttgtccatgatcttgcccagcaagcccttctt 302
>gb|L35913.1|MZELIPASE Zea mays dehydrin (dhn-2) mRNA, complete cds Length = 1277 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 339 tcttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttctt 390 |||||||||| ||||| | ||||||||||||||||||||| | ||||||||| Sbjct: 864 tcttgtggtagccgggtatcttgtccatgatcttgcccagcaagcccttctt 813
>gb|AY111114.1| Zea mays CL2452_1 mRNA sequence Length = 1256 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 339 tcttgtggtaaccgggcagcttgtccatgatcttgcccagtaggcccttctt 390 |||||||||| ||||| | ||||||||||||||||||||| | ||||||||| Sbjct: 843 tcttgtggtagccgggtatcttgtccatgatcttgcccagcaagcccttctt 792
>emb|AJ439990.1|OSA439990 Oryza sativa partial mRNA for putative cold acclimation protein (cap-L gene) Length = 504 Score = 60.0 bits (30), Expect = 7e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 340 cttgtggtaaccgggcagcttgtccatgatcttgcccagta 380 |||||||||||||||||| || | ||||||||||||||||| Sbjct: 123 cttgtggtaaccgggcagtttctncatgatcttgcccagta 83
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 411 tcacctcctcggcggccggcgcaggcgc 438 |||||||||||||||||||||| ||||| Sbjct: 18517274 tcacctcctcggcggccggcgccggcgc 18517247
>dbj|AK073885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073G16, full insert sequence Length = 976 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 411 tcacctcctcggcggccggcgcaggcgc 438 |||||||||||||||||||||| ||||| Sbjct: 526 tcacctcctcggcggccggcgccggcgc 499
>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete sequence Length = 205838 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 90 ctgactctggaccaaactgaagcc 113 |||||||||||||||||||||||| Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
>ref|NM_192777.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1419 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcgc 438 |||||||||||||||||| |||||| Sbjct: 349 cctcctcggcggccggcgaaggcgc 325
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence Length = 156547 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 acccaaactgaacacaagcat 139 ||||||||||||||||||||| Sbjct: 134241 acccaaactgaacacaagcat 134261
>gb|AY349246.1| Hordeum vulgare subsp. spontaneum NPGS PI 560559 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349245.1| Hordeum vulgare subsp. spontaneum NPGS PI 560556 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349244.1| Hordeum vulgare subsp. spontaneum NPGS PI 531957 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349243.1| Hordeum vulgare subsp. spontaneum NPGS PI 531853 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349242.1| Hordeum vulgare subsp. spontaneum NPGS PI 531851 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349241.1| Hordeum vulgare subsp. spontaneum NPGS PI 466460 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349240.1| Hordeum vulgare subsp. spontaneum NPGS PI 420916 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349239.1| Hordeum vulgare subsp. spontaneum NPGS PI 420913 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349238.1| Hordeum vulgare subsp. spontaneum NPGS PI 420911 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349237.1| Hordeum vulgare subsp. spontaneum NPGS PI 406276 dehydrin 5 (Dhn5) gene, partial cds Length = 1055 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 997 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 957
>gb|AY349236.1| Hordeum vulgare subsp. spontaneum NPGS PI 401371 dehydrin 5 (Dhn5) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 388 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 348
>gb|AY349235.1| Hordeum vulgare subsp. spontaneum NPGS PI 401371 dehydrin 5 (Dhn5) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 388 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 348
>gb|AY349234.1| Hordeum vulgare subsp. spontaneum NPGS PI 401370 dehydrin 5 (Dhn5) gene, partial cds Length = 1055 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 997 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 957
>gb|AY349233.1| Hordeum vulgare subsp. spontaneum NPGS PI 366446 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349232.1| Hordeum vulgare subsp. spontaneum NPGS PI 296926 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349231.1| Hordeum vulgare subsp. spontaneum NPGS PI 293411 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349230.1| Hordeum vulgare subsp. spontaneum NPGS PI 293409 dehydrin 5 (Dhn5) gene, partial cds Length = 1061 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 1003 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 963
>gb|AY349229.1| Hordeum vulgare subsp. spontaneum NPGS PI 293402 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349228.1| Hordeum vulgare subsp. spontaneum NPGS PI 268242 dehydrin 5 (Dhn5) gene, partial cds Length = 1055 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 997 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 957
>gb|AY349227.1| Hordeum vulgare subsp. spontaneum NPGS PI 254894 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349226.1| Hordeum vulgare subsp. spontaneum NPGS PI 253933 dehydrin 5 (Dhn5) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 388 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 348
>gb|AY349225.1| Hordeum vulgare subsp. spontaneum NPGS PI 253933 dehydrin 5 (Dhn5) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 388 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 348
>gb|AY349224.1| Hordeum vulgare subsp. spontaneum NPGS PI 236388 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349223.1| Hordeum vulgare subsp. spontaneum NPGS PI 220523 dehydrin 5 (Dhn5) gene, partial cds Length = 1055 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 997 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 957
>gb|AY349222.1| Hordeum vulgare subsp. spontaneum NPGS PI 219796 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349221.1| Hordeum vulgare subsp. spontaneum NPGS PI 212306 dehydrin 5 (Dhn5) gene, partial cds Length = 1049 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 991 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 951
>gb|AY349220.1| Hordeum vulgare subsp. spontaneum NPGS PI 212305 dehydrin 5 (Dhn5) gene, partial cds Length = 1055 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 997 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 957
>emb|AL138725.19| Human DNA sequence from clone RP11-528A10 on chromosome 6 Contains an IMPDH1 (IMP (inosine monophosphate) dehydrogenase 1) pseudogene, an RNA helicase pseudogene and part of a novel gene similar to KIAA0161, complete sequence Length = 165653 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 ttgcccagtaggcccttcttc 391 ||||||||||||||||||||| Sbjct: 48697 ttgcccagtaggcccttcttc 48717
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcgc 438 |||||||||||||||||| |||||| Sbjct: 24360655 cctcctcggcggccggcgaaggcgc 24360631 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ccatgatcttgcccagtagg 382 |||||||||||||||||||| Sbjct: 42400771 ccatgatcttgcccagtagg 42400752
>gb|DQ015701.1| Ovis aries endothelial nitric oxide synthase mRNA, complete cds Length = 4097 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 gggcggcggccttgtcctcctcccc 336 |||||||||||||| |||||||||| Sbjct: 2195 gggcggcggccttggcctcctcccc 2171
>gb|AF031247.1|AF031247 Lophopyrum elongatum dehydrin-/LEA group 2-like protein (ESI18-2) mRNA, complete cds Length = 1518 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 1282 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 1242
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcgc 438 |||||||||||||||||| |||||| Sbjct: 106559 cctcctcggcggccggcgaaggcgc 106535
>dbj|AK105551.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A11, full insert sequence Length = 1509 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcgc 438 |||||||||||||||||| |||||| Sbjct: 399 cctcctcggcggccggcgaaggcgc 375
>gb|AF181455.1|AF181455 Hordeum vulgare dehydrin (Dhn5) gene, complete cds Length = 3447 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 2313 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 2273
>gb|AY105409.1| Zea mays PCO095801 mRNA sequence Length = 741 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 411 tcacctcctcggcggccggcg 431 ||||||||||||||||||||| Sbjct: 215 tcacctcctcggcggccggcg 235
>gb|AF043096.1|AF043096 Hordeum vulgare dehydrin 5 (dhn5) gene, complete cds Length = 2814 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 2311 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 2271
>gb|AF058794.1|AF058794 Triticum aestivum COR39 (cor39) mRNA, complete cds Length = 1243 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 1213 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 1173
>gb|M95810.1|BLYDHN5 Hordeum vulgare dehydrin DHN5 (Dhn5) gene, complete cds Length = 2432 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 |||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 2306 ggcagcttgtccttgatcttgtccatgaggctcttcttctc 2266
>gb|M99057.1|BOVNIOXSY Bovine nitric oxide synthase mRNA, complete cds Length = 4096 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 gggcggcggccttgtcctcctcccc 336 |||||||||||||| |||||||||| Sbjct: 2196 gggcggcggccttggcctcctcccc 2172
>gb|M89952.1|BOVECNOS Bos taurus endothelial nitric oxide synthase mRNA, complete cds Length = 3738 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 gggcggcggccttgtcctcctcccc 336 |||||||||||||| |||||||||| Sbjct: 2186 gggcggcggccttggcctcctcccc 2162
>ref|NM_197772.1| Oryza sativa (japonica cultivar-group) putative nucleic acid binding protein (OSJNBa0027P10.5), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcg 437 ||||||||||||||||||| |||| Sbjct: 79 cctcctcggcggccggcgcgggcg 56
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03 map near 50283S, complete sequence Length = 134074 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 60504 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 60461
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cggcggccttgtcctcctcc 334 |||||||||||||||||||| Sbjct: 72754 cggcggccttgtcctcctcc 72735
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence Length = 221754 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 aataagcaaataaacttaaa 76 |||||||||||||||||||| Sbjct: 153660 aataagcaaataaacttaaa 153679
>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0511) partial mRNA Length = 5448 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aaataaacttaaacaacatc 83 |||||||||||||||||||| Sbjct: 4865 aaataaacttaaacaacatc 4884
>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence Length = 211515 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 gtaataataagcaaataaacttaaacaa 79 |||||||||||||||| || |||||||| Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5, complete sequence Length = 177385 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 taataataagcaaataaacttaaa 76 |||||||||| ||||||||||||| Sbjct: 63646 taataataagtaaataaacttaaa 63623
>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5, complete sequence Length = 157791 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 taataataagcaaataaacttaaa 76 |||||||||| ||||||||||||| Sbjct: 81135 taataataagtaaataaacttaaa 81112
>gb|AE005809.1| Caulobacter crescentus CB15 section 135 of 359 of the complete genome Length = 10696 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cggcggccggcgcaggcgcg 439 |||||||||||||||||||| Sbjct: 6577 cggcggccggcgcaggcgcg 6596
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gcaggcgcgtgcactggcgc 450 |||||||||||||||||||| Sbjct: 3181618 gcaggcgcgtgcactggcgc 3181599
>gb|AE012230.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 138 of 460 of the complete genome Length = 10813 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cgcgtgcactggcgctggag 455 |||||||||||||||||||| Sbjct: 10209 cgcgtgcactggcgctggag 10190
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcg 437 ||||||||||||||||||| |||| Sbjct: 69746 cctcctcggcggccggcgcgggcg 69723
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cgcgtgcactggcgctggag 455 |||||||||||||||||||| Sbjct: 3509653 cgcgtgcactggcgctggag 3509672
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 14766556 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 14766599
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcg 437 ||||||||||||||||||| |||| Sbjct: 21755063 cctcctcggcggccggcgcgggcg 21755040
>gb|AF031248.1|AF031248 Lophopyrum elongatum dehydrin-/LEA group 2-like protein (ESI18-3) mRNA, complete cds Length = 793 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 473 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 430
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483G10 Length = 190721 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ccatgatcttgcccagtagg 382 |||||||||||||||||||| Sbjct: 60109 ccatgatcttgcccagtagg 60090
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gctgctcacctcctcggcgg 425 |||||||||||||||||||| Sbjct: 7122494 gctgctcacctcctcggcgg 7122475
>dbj|AB105039.1| Daucus carota CAISE1 mRNA for dehydrin protein, complete cds Length = 771 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 accgggcagcttgtccatgatctt 372 |||||||||||||||| ||||||| Sbjct: 506 accgggcagcttgtccttgatctt 483
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 cttcttctccttcgcgtccgggct 408 |||||||||||||||| ||||||| Sbjct: 4529751 cttcttctccttcgcggccgggct 4529728
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete sequences Length = 181678 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 caggacctgactctggaccaaactgaag 111 |||||| ||||||||||||| ||||||| Sbjct: 3276 caggacttgactctggaccagactgaag 3249
>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete sequences Length = 155513 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 caggacctgactctggaccaaactgaag 111 |||||| ||||||||||||| ||||||| Sbjct: 131204 caggacttgactctggaccagactgaag 131177
>emb|Y00842.1|OSRAB21 Rice rab21 gene for water-stress inducible protein RAB21 Length = 2537 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 2163 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 2120
>emb|X78429.1|TDDEH16 T.durum Desf. (Siliana) Dehydrin mRNA, clone pTd16 Length = 814 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 505 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 462
>emb|X15287.1|HVDHN18 Barley mRNA for dehydrin (dhn18) Length = 1049 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 742 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 699
>emb|X15286.1|HVDHN17 Barley mRNA for dehydrin (dhn17) Length = 812 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 535 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 492
>gb|U60097.2|OSU60097 Oryza sativa dehydrin mRNA, complete cds Length = 864 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 572 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 529
>gb|AF181453.1|AF181453 Hordeum vulgare dehydrin (Dhn3) gene, complete cds Length = 1575 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 1350 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 1307
>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence Length = 176649 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aataagcaaataaacttaaa 76 |||||||||||||||||||| Sbjct: 121495 aataagcaaataaacttaaa 121476
>gb|AF043089.1|AF043089 Hordeum vulgare dehydrin 3 (dhn3) gene, complete cds Length = 1560 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 1313 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 1270
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 caggacctgactctggaccaaactgaag 111 |||||| ||||||||||||| ||||||| Sbjct: 80688 caggacttgactctggaccagactgaag 80661
>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete sequence Length = 136804 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 caggacctgactctggaccaaactgaag 111 |||||| ||||||||||||| ||||||| Sbjct: 102805 caggacttgactctggaccagactgaag 102778
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cctcctcggcggccggcgcaggcg 437 ||||||||||||||||||| |||| Sbjct: 21766726 cctcctcggcggccggcgcgggcg 21766703
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 350 ccgggcagcttgtccatgatcttgcccagtaggcccttcttctc 393 ||||||||||| ||| |||||||| ||| | |||||||||||| Sbjct: 14846993 ccgggcagcttctccttgatcttgtccatgatgcccttcttctc 14847036 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,916,445 Number of Sequences: 3902068 Number of extensions: 3916445 Number of successful extensions: 87048 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86230 Number of HSP's gapped (non-prelim): 805 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)