>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  151 bits (382), Expect = 1e-36
 Identities = 83/139 (59%), Positives = 97/139 (69%), Gaps = 13/139 (9%)
 Frame = -3

Query: 526 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 380
           MA S+++S  + P+S           LPSLSR  +SF V  SG KKIKVDKPLG+GGG+ 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 379 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 206
           +   +D++GRK   KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YAGGTTGLLIWAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

Query: 205 XXXXXXXXXXLVYNTSALA 149
                     LVYNTSALA
Sbjct: 121 LAGLLAGGALLVYNTSALA 139

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  142 bits (359), Expect = 5e-34
 Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 11/137 (8%)
 Frame = -3

Query: 526 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 377
           MA+++++S  + PT          LPSL+R  SSF VV SG KK+K DKP G+ G + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 376 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 200
             +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120

Query: 199 XXXXXXXXLVYNTSALA 149
                   LVYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  142 bits (359), Expect = 5e-34
 Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 11/137 (8%)
 Frame = -3

Query: 526 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 377
           MA+++++S  + PT          LPSL+R  SSF VV SG KK+K DKP G+ G + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 376 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 200
             +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120

Query: 199 XXXXXXXXLVYNTSALA 149
                   LVYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  137 bits (346), Expect = 1e-32
 Identities = 71/117 (60%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
 Frame = -3

Query: 493 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 320
           A   LPSL+R  SSF V  SG KK+K DKP G+ G +++   +DA+GRK   KGVYQFVD
Sbjct: 19  AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78

Query: 319 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 149
           KYGANVDGYSPIY  ++WS SGD Y GGTTGL IWAVT          LV+NTSALA
Sbjct: 79  KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  132 bits (333), Expect = 5e-31
 Identities = 74/139 (53%), Positives = 86/139 (61%), Gaps = 13/139 (9%)
 Frame = -3

Query: 526 MAASMITSPIV-----------APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 380
           MAAS++ S +            A   LPSL+R   SF +V SG KKIK DKP G+ G + 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 379 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 206
           +   +DA+GRK    GVY++VDKYGANVDGYSPIY   EWS SGD Y GG TGL IWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 205 XXXXXXXXXXLVYNTSALA 149
                     LVYNTSALA
Sbjct: 121 LAGILAGGALLVYNTSALA 139

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  131 bits (330), Expect = 1e-30
 Identities = 75/140 (53%), Positives = 89/140 (63%), Gaps = 14/140 (10%)
 Frame = -3

Query: 526 MAASMITSPI-----------VAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGL 383
           MAAS++ S +           ++   LPSL+R   SSF +V SG KKIK DKP G+ G +
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 382 TV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAV 209
            +   +DA+GRK    GVY+FVDKYGANVDGYSPIY  +EWS SGD Y GG TGL IWAV
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 208 TXXXXXXXXXXLVYNTSALA 149
           T          LVYNTSALA
Sbjct: 121 TLAGILAGGALLVYNTSALA 140

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  123 bits (309), Expect = 3e-28
 Identities = 68/137 (49%), Positives = 82/137 (59%), Gaps = 11/137 (8%)
 Frame = -3

Query: 526 MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPLGLGGGLTVD 374
           M+A ++ S  + P+S P L R            S  +V    KK++  +P G GGG+   
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60

Query: 373 --IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 200
             +DA+GR    KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT  
Sbjct: 61  EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120

Query: 199 XXXXXXXXLVYNTSALA 149
                   LVY+TSALA
Sbjct: 121 GILLGGALLVYSTSALA 137

>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)|
          Length = 24

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 436 SGGKKIKVDKPLGLGGGLTVDIDA 365
           SGGKKIKVDKPLGLGGGLTVDIDA
Sbjct: 1   SGGKKIKVDKPLGLGGGLTVDIDA 24

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 339 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 473
           P+LP   P  S   + PPPS P G  T I   PL++ AK +   ++
Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = +3

Query: 297  PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 446
            P T  P  +T   TP         PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 297  PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 446
            P+T+    + N   P  PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928

>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 446

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = -3

Query: 481 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRKVGKKGV 335
           L  ++ R    AVVC GG + K D  L L  G+T DI   G KV  + V
Sbjct: 354 LSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMT-DILTVGSKVDSESV 401

>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor|
          Length = 265

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 442 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 275
           +CSG   KI+  K +G    + T D +A   + VG  G Y +V  Y A  DGY+  Y+P
Sbjct: 59  LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116

>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3036

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 25/79 (31%), Positives = 33/79 (41%)
 Frame = +3

Query: 297  PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERD 476
            P  L P+   ++  P L T+           PP   G +    LPP  TT    PRR R 
Sbjct: 2285 PPALPPWARPDYNPPLLETW-----KRPDYQPPVVAGCA----LPPPGTTPVPPPRRRRA 2335

Query: 477  GRLVGATIGEVIMEAAIVS 533
              L  + +GE + E AI S
Sbjct: 2336 VVLDQSNVGEALKELAIKS 2354

>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)|
          Length = 433

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 436 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 287
           SGG  + V   +G  LGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 436 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 287
           SGG  + V   +G  LGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 360 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 479
           P+    T KPP  P G +     PP Q T  E+P  E+ G
Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387

>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor|
          Length = 893

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = +3

Query: 384 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 509
           +PPP+PR  S     PP Q        TT    PRR RD R  G   G+V
Sbjct: 53  RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101

>AAS_SHIFL (Q83JV7) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 414 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSR 536
           TL  LPP Q    + PR     ++ G  + +++MEA +  R
Sbjct: 161 TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVR 201

>AAS_ECOLI (P31119) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 414 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSR 536
           TL  LPP Q    + PR     ++ G  + +++MEA +  R
Sbjct: 161 TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVR 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,127,722
Number of Sequences: 219361
Number of extensions: 919653
Number of successful extensions: 3593
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3580
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)