Clone Name | rbasd11g12 |
---|---|
Clone Library Name | barley_pub |
>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2 Length = 4120 Score = 317 bits (160), Expect = 3e-83 Identities = 277/316 (87%) Strand = Plus / Minus Query: 421 atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480 ||||||| || |||||||| | |||| |||| |||||||||||| |||||||| |||| Sbjct: 3511 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 3452 Query: 481 aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540 |||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct: 3451 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 3392 Query: 541 cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaacataggcct 600 ||||||| || |||| ||| | ||||||||| |||||| ||||||||||| || |||| Sbjct: 3391 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaacgtaagcct 3332 Query: 601 caatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttgacaa 660 ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct: 3331 caatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttcacaa 3272 Query: 661 tctccttgttaacctttgggactagtgtatcatcttcatccaacatgtaggctaggccac 720 |||||||||||||||||||||| ||||||||||| ||||| | || ||||| ||||||| Sbjct: 3271 tctccttgttaacctttgggacgagtgtatcatcctcatctagaatataggcaaggccac 3212 Query: 721 cggtcattccggctgc 736 | |||||||| ||||| Sbjct: 3211 ccgtcattccagctgc 3196 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 29 gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 88 |||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 3936 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 3880 Query: 89 cagaacaaaaaata 102 |||||| ||||||| Sbjct: 3879 cagaaccaaaaata 3866 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 263 aagatgccttggacagagcttccacaaaattgcagcctttgg 304 |||||||||||| ||||||||||||||||| |||| |||||| Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 170 cctagcgtcagcgaaccaatttacagggg 198 |||||||||||| |||||||||||||||| Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762
>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1 Length = 2851 Score = 317 bits (160), Expect = 3e-83 Identities = 277/316 (87%) Strand = Plus / Minus Query: 421 atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480 ||||||| || |||||||| | |||| |||| |||||||||||| |||||||| |||| Sbjct: 2242 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 2183 Query: 481 aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540 |||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct: 2182 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 2123 Query: 541 cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaacataggcct 600 ||||||| || |||| ||| | ||||||||| |||||| ||||||||||| || |||| Sbjct: 2122 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaacgtaagcct 2063 Query: 601 caatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttgacaa 660 ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct: 2062 caatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttcacaa 2003 Query: 661 tctccttgttaacctttgggactagtgtatcatcttcatccaacatgtaggctaggccac 720 |||||||||||||||||||||| ||||||||||| ||||| | || ||||| ||||||| Sbjct: 2002 tctccttgttaacctttgggacgagtgtatcatcctcatctagaatataggcaaggccac 1943 Query: 721 cggtcattccggctgc 736 | |||||||| ||||| Sbjct: 1942 ccgtcattccagctgc 1927 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 29 gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 88 |||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 2667 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 2611 Query: 89 cagaacaaaaaata 102 |||||| ||||||| Sbjct: 2610 cagaaccaaaaata 2597 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 263 aagatgccttggacagagcttccacaaaattgcagcctttgg 304 |||||||||||| ||||||||||||||||| |||| |||||| Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 170 cctagcgtcagcgaaccaatttacagggg 198 |||||||||||| |||||||||||||||| Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493
>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full insert sequence Length = 3596 Score = 317 bits (160), Expect = 3e-83 Identities = 277/316 (87%) Strand = Plus / Minus Query: 421 atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480 ||||||| || |||||||| | |||| |||| |||||||||||| |||||||| |||| Sbjct: 3126 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 3067 Query: 481 aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540 |||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct: 3066 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 3007 Query: 541 cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaacataggcct 600 ||||||| || |||| ||| | ||||||||| |||||| ||||||||||| || |||| Sbjct: 3006 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaacgtaagcct 2947 Query: 601 caatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttgacaa 660 ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct: 2946 caatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttcacaa 2887 Query: 661 tctccttgttaacctttgggactagtgtatcatcttcatccaacatgtaggctaggccac 720 |||||||||||||||||||||| ||||||||||| ||||| | || ||||| ||||||| Sbjct: 2886 tctccttgttaacctttgggacgagtgtatcatcctcatctagaatataggcaaggccac 2827 Query: 721 cggtcattccggctgc 736 | |||||||| ||||| Sbjct: 2826 ccgtcattccagctgc 2811 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Minus Query: 29 gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 88 |||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 3553 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 3497 Query: 89 cagaacaaaaaata 102 |||||| ||||||| Sbjct: 3496 cagaaccaaaaata 3483 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 263 aagatgccttggacagagcttccacaaaattgcagcctttgg 304 |||||||||||| ||||||||||||||||| |||| |||||| Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 170 cctagcgtcagcgaaccaatttacagggg 198 |||||||||||| |||||||||||||||| Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377
>ref|XM_479407.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4923 Score = 315 bits (159), Expect = 1e-82 Identities = 276/315 (87%) Strand = Plus / Minus Query: 422 tcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcaca 481 |||||| || |||||||| | |||| |||| |||||||||||| |||||||| ||||| Sbjct: 4923 tcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcaca 4864 Query: 482 agcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatgc 541 ||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||| Sbjct: 4863 agcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatgc 4804 Query: 542 ctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaacataggcctc 601 |||||| || |||| ||| | ||||||||| |||||| ||||||||||| || ||||| Sbjct: 4803 ctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaacgtaagcctc 4744 Query: 602 aatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttgacaat 661 |||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 4743 aatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttcacaat 4684 Query: 662 ctccttgttaacctttgggactagtgtatcatcttcatccaacatgtaggctaggccacc 721 ||||||||||||||||||||| ||||||||||| ||||| | || ||||| |||||||| Sbjct: 4683 ctccttgttaacctttgggacgagtgtatcatcctcatctagaatataggcaaggccacc 4624 Query: 722 ggtcattccggctgc 736 |||||||| ||||| Sbjct: 4623 cgtcattccagctgc 4609
>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds Length = 5617 Score = 278 bits (140), Expect = 2e-71 Identities = 251/288 (87%) Strand = Plus / Minus Query: 449 ttgcctggcaagtactctctcaaactcagcacaagcttcaggagagtcttcttcgctggg 508 |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 5151 ttgcttggcaagtactctctcaaactctgcacaagcctcaggcgagtcttcttcactggg 5092 Query: 509 tggcaccaactgccagaagagtggcagatatgcctcccactcgctcagaattttagcacc 568 || |||| ||||||||||| |||| ||| |||||||| || |||| ||| | ||| Sbjct: 5091 cggtaccagttgccagaagagcggcaaataggcctcccattccctcaaaatcgcaatacc 5032 Query: 569 tttcgtgctgcccgttttttcaacataggcctcaatcaagcccttgagctgcatctgccc 628 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 5031 tttctcgctgcccgttttttcaacataggcctcaatcaagccctttagctgcatctgccc 4972 Query: 629 agctggagcattaactctctgcatcttgacaatctccttgttaacctttgggactagtgt 688 |||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| Sbjct: 4971 agctggagcattcactctctgcattttgacgatttccttgttgacctttgggacaagtgt 4912 Query: 689 atcatcttcatccaacatgtaggctaggccaccggtcattccggctgc 736 |||||| ||||| | |||||||| || ||||| |||||||| ||||| Sbjct: 4911 atcatcctcatctagaatgtaggcaagaccaccagtcattccagctgc 4864 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 162 ccttgcagcctagcgtcagcgaaccaatttacaggggt 199 |||||||||||||||||||| ||||||||||||||||| Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence Length = 5572 Score = 270 bits (136), Expect = 6e-69 Identities = 250/288 (86%) Strand = Plus / Minus Query: 449 ttgcctggcaagtactctctcaaactcagcacaagcttcaggagagtcttcttcgctggg 508 |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 5151 ttgcttggcaagtactctctcaaactctgcacaagcctcaggcgagtcttcttcactggg 5092 Query: 509 tggcaccaactgccagaagagtggcagatatgcctcccactcgctcagaattttagcacc 568 || |||| ||||||||||| |||| ||| |||||||| || |||| ||| | ||| Sbjct: 5091 cggtaccagttgccagaagagcggcaaataggcctcccattccctcaaaatcgcaatacc 5032 Query: 569 tttcgtgctgcccgttttttcaacataggcctcaatcaagcccttgagctgcatctgccc 628 |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 5031 tttctcgctgcccgttttatcaacataggcctcaatcaagccctttagctgcatctgccc 4972 Query: 629 agctggagcattaactctctgcatcttgacaatctccttgttaacctttgggactagtgt 688 |||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| Sbjct: 4971 agctggagcattcactctctgcattttgacgatttccttgttgacctttgggacaagtgt 4912 Query: 689 atcatcttcatccaacatgtaggctaggccaccggtcattccggctgc 736 |||||| ||||| | |||||||| || ||||| |||||||| ||||| Sbjct: 4911 atcatcctcatctagaatgtaggcaagaccaccagtcattccagctgc 4864 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 162 ccttgcagcctagcgtcagcgaaccaatttacaggggt 199 |||||||||||||||||||| ||||||||||||||||| Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 421 atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480 ||||||| || |||||||| | |||| |||| |||||||||||| |||||||| |||| Sbjct: 27669980 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 27670039 Query: 481 aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540 |||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct: 27670040 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 27670099 Query: 541 cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttc 589 ||||||| || |||| ||| | ||||||||| |||||| |||||||| Sbjct: 27670100 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttc 27670148 Score = 125 bits (63), Expect = 2e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 597 gcctcaatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttg 656 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 27670239 gcctcaatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttc 27670298 Query: 657 acaatctccttgttaacct 675 ||||||||||||||||||| Sbjct: 27670299 acaatctccttgttaacct 27670317 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 29 gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 88 |||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 27669553 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 27669609 Query: 89 cagaacaaaaaata 102 |||||| ||||||| Sbjct: 27669610 cagaaccaaaaata 27669623 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 671 aacctttgggactagtgtatcatcttcatccaacatgtaggctaggccaccggtcattcc 730 |||||||||||| ||||||||||| ||||| | || ||||| |||||||| |||||||| Sbjct: 27670680 aacctttgggacgagtgtatcatcctcatctagaatataggcaaggccacccgtcattcc 27670739 Query: 731 ggctgc 736 ||||| Sbjct: 27670740 agctgc 27670745 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 263 aagatgccttggacagagcttccacaaaattgcagcctttgg 304 |||||||||||| ||||||||||||||||| |||| |||||| Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Plus Query: 170 cctagcgtcagcgaaccaatttacagggg 198 |||||||||||| |||||||||||||||| Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 421 atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480 ||||||| || |||||||| | |||| |||| |||||||||||| |||||||| |||| Sbjct: 126973 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 127032 Query: 481 aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540 |||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct: 127033 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 127092 Query: 541 cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttc 589 ||||||| || |||| ||| | ||||||||| |||||| |||||||| Sbjct: 127093 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttc 127141 Score = 125 bits (63), Expect = 2e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 597 gcctcaatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttg 656 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 127232 gcctcaatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttc 127291 Query: 657 acaatctccttgttaacct 675 ||||||||||||||||||| Sbjct: 127292 acaatctccttgttaacct 127310 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 29 gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 88 |||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 126546 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 126602 Query: 89 cagaacaaaaaata 102 |||||| ||||||| Sbjct: 126603 cagaaccaaaaata 126616 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 671 aacctttgggactagtgtatcatcttcatccaacatgtaggctaggccaccggtcattcc 730 |||||||||||| ||||||||||| ||||| | || ||||| |||||||| |||||||| Sbjct: 127673 aacctttgggacgagtgtatcatcctcatctagaatataggcaaggccacccgtcattcc 127732 Query: 731 ggctgc 736 ||||| Sbjct: 127733 agctgc 127738 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 263 aagatgccttggacagagcttccacaaaattgcagcctttgg 304 |||||||||||| ||||||||||||||||| |||| |||||| Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Plus Query: 170 cctagcgtcagcgaaccaatttacagggg 198 |||||||||||| |||||||||||||||| Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 421 atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480 ||||||| || |||||||| | |||| |||| |||||||||||| |||||||| |||| Sbjct: 49082 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 49141 Query: 481 aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540 |||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct: 49142 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 49201 Query: 541 cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttc 589 ||||||| || |||| ||| | ||||||||| |||||| |||||||| Sbjct: 49202 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttc 49250 Score = 125 bits (63), Expect = 2e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 597 gcctcaatcaagcccttgagctgcatctgcccagctggagcattaactctctgcatcttg 656 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 49341 gcctcaatcaagcccttcagctgcatctgcccggctggagcattcactctctgcatcttc 49400 Query: 657 acaatctccttgttaacct 675 ||||||||||||||||||| Sbjct: 49401 acaatctccttgttaacct 49419 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 29 gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 88 |||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 48655 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 48711 Query: 89 cagaacaaaaaata 102 |||||| ||||||| Sbjct: 48712 cagaaccaaaaata 48725 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 671 aacctttgggactagtgtatcatcttcatccaacatgtaggctaggccaccggtcattcc 730 |||||||||||| ||||||||||| ||||| | || ||||| |||||||| |||||||| Sbjct: 49782 aacctttgggacgagtgtatcatcctcatctagaatataggcaaggccacccgtcattcc 49841 Query: 731 ggctgc 736 ||||| Sbjct: 49842 agctgc 49847 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 263 aagatgccttggacagagcttccacaaaattgcagcctttgg 304 |||||||||||| ||||||||||||||||| |||| |||||| Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Plus Query: 170 cctagcgtcagcgaaccaatttacagggg 198 |||||||||||| |||||||||||||||| Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831
>gb|AF061515.1| Spinacia oleracea ferroxin-dependent glutamate synthase precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 5015 Score = 69.9 bits (35), Expect = 1e-08 Identities = 170/215 (79%) Strand = Plus / Minus Query: 486 tcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatgcctcc 545 ||||||| ||||||||| || ||||| |||| |||||| || ||||| ||||| ||| Sbjct: 4496 tcaggagtgtcttcttcacttggtggaaccagctgccaaaatagtggaagatacttgtcc 4437 Query: 546 cactcgctcagaattttagcacctttcgtgctgcccgttttttcaacataggcctcaatc 605 || || | ||||| |||||||||||| || || ||||||||||||| ||| ||||| Sbjct: 4436 cagtcctttagaatactagcacctttcgaacttccagttttttcaacatgggcttcaatt 4377 Query: 606 aagcccttgagctgcatctgcccagctggagcattaactctctgcatcttgacaatctcc 665 | | ||| || ||||| |||||| | ||||| | || ||||| || || || |||||| Sbjct: 4376 aggttcttcagttgcatttgcccaacaggagctgtcaccctctggattttcactatctcc 4317 Query: 666 ttgttaacctttgggactagtgtatcatcttcatc 700 ||||| |||||||| | ||||||||||||||||| Sbjct: 4316 ttgtttacctttggaatgagtgtatcatcttcatc 4282
>gb|U03006.1|SOGOGAT Spinacia oleracea ferredoxin-dependent glutamate synthase mRNA, partial cds Length = 4948 Score = 69.9 bits (35), Expect = 1e-08 Identities = 170/215 (79%) Strand = Plus / Minus Query: 486 tcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatgcctcc 545 ||||||| ||||||||| || ||||| |||| |||||| || ||||| ||||| ||| Sbjct: 4391 tcaggagtgtcttcttcacttggtggaaccagctgccaaaatagtggaagatacttgtcc 4332 Query: 546 cactcgctcagaattttagcacctttcgtgctgcccgttttttcaacataggcctcaatc 605 || || | ||||| |||||||||||| || || ||||||||||||| ||| ||||| Sbjct: 4331 cagtcctttagaatactagcacctttcgaacttccagttttttcaacatgggcttcaatt 4272 Query: 606 aagcccttgagctgcatctgcccagctggagcattaactctctgcatcttgacaatctcc 665 | | ||| || ||||| |||||| | ||||| | || ||||| || || || |||||| Sbjct: 4271 aggttcttcagttgcatttgcccaacaggagctgtcaccctctggattttcactatctcc 4212 Query: 666 ttgttaacctttgggactagtgtatcatcttcatc 700 ||||| |||||||| | ||||||||||||||||| Sbjct: 4211 ttgtttacctttggaatgagtgtatcatcttcatc 4177
>emb|X98541.1|VVGLUSYN1 V.vinifera mRNA for ferredoxin-dependent glutamate synthase (clone pGOGAT5) Length = 578 Score = 63.9 bits (32), Expect = 7e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 464 tctctcaaactcagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgcca 523 |||||||||||| || | |||||| || | |||||| || ||||| || |||| ||||| Sbjct: 180 tctctcaaactctgcgctagcttctggggtgtcttcctcactgggaggaaccagttgcca 121 Query: 524 gaagagtggcagatatgcctcccactcgctcagaattttagcacctttcgtgctgcccgt 583 |||||||||||| |||| |||||||| ||| ||| | ||||| |||| || || Sbjct: 120 gaagagtggcaggtatgtatcccactccttcaaaatagctgagcctttgctgcttccagt 61 Query: 584 tttttcaacataggcctcaatcaagcccttgagctgcatctgcc 627 ||||||||||| ||| ||||||| || ||| ||||||||||||| Sbjct: 60 tttttcaacatgggcttcaatcaggctctttagctgcatctgcc 17
>ref|NM_180432.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT GLUAMATE SYNTHASE 1) AT5G04140 (GLU1) transcript variant AT5G04140.2 mRNA, complete cds Length = 5199 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 4900 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4841 Query: 535 gata 538 |||| Sbjct: 4840 gata 4837
>ref|NM_120496.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT GLUAMATE SYNTHASE 1) AT5G04140 (GLU1) transcript variant AT5G04140.1 mRNA, complete cds Length = 5304 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 5001 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4942 Query: 535 gata 538 |||| Sbjct: 4941 gata 4938
>emb|Y09667.1|ATFDGSYN A.thaliana mRNA for ferredoxin-dependent glutamate synthase Length = 5178 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 4900 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4841 Query: 535 gata 538 |||| Sbjct: 4840 gata 4837
>emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BAC clone F21E1 (ESSA project) Length = 97451 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 41686 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 41627 Query: 535 gata 538 |||| Sbjct: 41626 gata 41623
>emb|BX833273.1|CNS09Z3E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZB10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 946 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 684 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 625 Query: 535 gata 538 |||| Sbjct: 624 gata 621
>gb|AY189525.1| Arabidopsis thaliana ferredoxin-dependent glutamate synthase gene, complete cds Length = 8628 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 8365 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 8306 Query: 535 gata 538 |||| Sbjct: 8305 gata 8302
>gb|U39287.1|ATU39287 Arabidopsis thaliana ferredoxin-dependent glutamate synthase precursor (GLU1) mRNA, complete cds Length = 5303 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534 ||||| |||||||||||| |||||| || || ||||| |||| ||||||||||| || | Sbjct: 5000 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4941 Query: 535 gata 538 |||| Sbjct: 4940 gata 4937
>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157448 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 472 actcagcacaagcttcaggagag 494 ||||||||||||||||||||||| Sbjct: 102896 actcagcacaagcttcaggagag 102918
>gb|AC139365.3| Homo sapiens chromosome 8, clone RP11-643N23, complete sequence Length = 185549 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 582 gttttttcaacataggcctcaat 604 ||||||||||||||||||||||| Sbjct: 112791 gttttttcaacataggcctcaat 112769 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 145268 tttttcaacataggcctcaat 145248 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 59463 tttttcaacataggcctcaat 59443 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 56227 tttttcaacataggcctcaat 56207 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 48861 tttttcaacataggcctcaat 48841 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 33920 tttttcaacataggcctcaat 33900
>gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq partial sequence Length = 645 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 89 cagaacaaaaaatataattaca 110 |||||||||||||||||||||| Sbjct: 245 cagaacaaaaaatataattaca 224
>gb|AC128676.2| Homo sapiens BAC clone RP11-65G11 from UL, complete sequence Length = 159143 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 86370 ttttttcaacataggcctcaat 86391 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaa 603 ||||||||||||||||||||| Sbjct: 71686 ttttttcaacataggcctcaa 71706
>gb|AC073534.4| Homo sapiens chromosome 19 clone CTD-2027I19, complete sequence Length = 106169 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 104480 ttttttcaacataggcctcaat 104501
>gb|AC073535.3| Homo sapiens chromosome 19 clone CTD-2037K13, complete sequence Length = 150840 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 35232 ttttttcaacataggcctcaat 35253 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 128372 tttttcaacataggcctcaat 128352 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 50677 tttttcaacataggcctcaat 50697
>gb|AC011512.8| Homo sapiens chromosome 19 clone LLNLF-101G11, complete sequence Length = 39588 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 32665 ttttttcaacataggcctcaat 32686
>gb|AC109490.3| Homo sapiens chromosome 16 clone RP11-65B9, complete sequence Length = 161024 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 582 gttttttcaacataggcctcaa 603 |||||||||||||||||||||| Sbjct: 72963 gttttttcaacataggcctcaa 72942
>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete sequence Length = 198653 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 32093 ttttttcaacataggcctcaat 32072 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 28200 tttttcaacataggcctcaat 28180
>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence Length = 190137 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 163770 ttttttcaacataggcctcaat 163749 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 583 ttttttcaacataggcctcaa 603 ||||||||||||||||||||| Sbjct: 178450 ttttttcaacataggcctcaa 178430
>gb|AC007794.1|AC007794 Homo sapiens chromosome 19, cosmid F17540, complete sequence Length = 39387 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaat 604 |||||||||||||||||||||| Sbjct: 6881 ttttttcaacataggcctcaat 6902 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 22326 tttttcaacataggcctcaat 22346
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 89 cagaacaaaaaatataattaca 110 |||||||||||||||||||||| Sbjct: 268710 cagaacaaaaaatataattaca 268689
>emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chromosome X, complete sequence Length = 79248 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 cgggtataaatataagaactaa 82 |||||||||||||||||||||| Sbjct: 7441 cgggtataaatataagaactaa 7420
>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence Length = 133860 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 643 ctctctgcatcttgacaatct 663 ||||||||||||||||||||| Sbjct: 75100 ctctctgcatcttgacaatct 75080
>gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complete sequence Length = 137446 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 71843 tttttcaacataggcctcaat 71823
>gb|AC118943.2| Homo sapiens BAC clone RP11-747A11 from 7, complete sequence Length = 25507 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 3098 tttttcaacataggcctcaat 3078
>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence Length = 142048 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 115370 tttttcaacataggcctcaat 115350 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 61627 tttttcaacataggcctcaat 61647 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 15585 tttttcaacataggcctcaat 15605
>gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, complete sequence Length = 161367 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 112231 tttttcaacataggcctcaat 112251 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 111743 tttttcaacataggcctcaat 111763 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 107525 tttttcaacataggcctcaat 107545 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 80812 tttttcaacataggcctcaat 80792
>emb|AL512884.15| Human DNA sequence from clone RP13-775K13 on chromosome Xp11.1-11.22, complete sequence Length = 157064 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 133327 tttttcaacataggcctcaat 133347
>gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, complete sequence Length = 190427 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 23940 tttttcaacataggcctcaat 23960
>gb|AC131051.4| Homo sapiens chromosome 11, clone CTD-2649L15, complete sequence Length = 37149 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 21815 tttttcaacataggcctcaat 21835
>gb|AC125790.2| Homo sapiens chromosome 5 clone CTD-2263N8, complete sequence Length = 106412 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 6980 tttttcaacataggcctcaat 7000
>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156422 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 87733 tttttcaacataggcctcaat 87753 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 43622 tttttcaacataggcctcaat 43642
>gb|AC144532.4| Homo sapiens 12 BAC RP11-613J12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131101 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 98901 tttttcaacataggcctcaat 98921 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 98044 tttttcaacataggcctcaat 98064 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 41022 tttttcaacataggcctcaat 41042 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 30826 tttttcaacataggcctcaat 30846
>gb|AC127495.2| Homo sapiens chromosome 11, clone RP11-463K8, complete sequence Length = 178648 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 583 ttttttcaacataggcctcaa 603 ||||||||||||||||||||| Sbjct: 125171 ttttttcaacataggcctcaa 125191 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 45013 tttttcaacataggcctcaat 45033 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 7582 tttttcaacataggcctcaat 7562
>gb|AC090009.9| Homo sapiens 12 BAC RP11-724J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 53631 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 20021 tttttcaacataggcctcaat 20001 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 2720 tttttcaacataggcctcaat 2700
>gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, complete sequence Length = 167763 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 126515 tttttcaacataggcctcaat 126535 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 39116 tttttcaacataggcctcaat 39136
>gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, complete sequence Length = 119883 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 111328 tttttcaacataggcctcaat 111308 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 107110 tttttcaacataggcctcaat 107090 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 43730 tttttcaacataggcctcaat 43710
>gb|AC124608.1| Homo sapiens chromosome 19 clone RP11-620G10, complete sequence Length = 176761 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 110559 tttttcaacataggcctcaat 110539 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 80638 tttttcaacataggcctcaat 80618 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 14507 tttttcaacataggcctcaat 14527
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 13862331 tttttcaacataggcctcaat 13862351
>gb|AC113435.14| Pan troglodytes clone rp43-153p22, complete sequence Length = 161703 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 13101 tttttcaacataggcctcaat 13081 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 9563 tttttcaacataggcctcaat 9543
>gb|AC110283.4| Homo sapiens chromosome 11, clone RP11-350A7, complete sequence Length = 162170 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 134909 tttttcaacataggcctcaat 134929 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 92535 tttttcaacataggcctcaat 92555 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 42958 tttttcaacataggcctcaat 42938
>gb|AC087377.7| Homo sapiens chromosome 11, clone RP11-292L2, complete sequence Length = 190650 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 86000 tttttcaacataggcctcaat 85980 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 56243 tttttcaacataggcctcaat 56263 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 7157 tttttcaacataggcctcaat 7177
>gb|AC091644.7| Homo sapiens chromosome 11, clone RP11-808H14, complete sequence Length = 183187 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 80955 tttttcaacataggcctcaat 80935 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 51198 tttttcaacataggcctcaat 51218 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 2112 tttttcaacataggcctcaat 2132
>gb|AC073541.4| Homo sapiens chromosome 19 clone RP11-21H14, complete sequence Length = 176941 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 83391 tttttcaacataggcctcaat 83371 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 28997 tttttcaacataggcctcaat 28977
>gb|AC138697.2| Homo sapiens chromosome 11, clone RP11-242O20, complete sequence Length = 149516 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 142249 tttttcaacataggcctcaat 142229 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 99860 tttttcaacataggcctcaat 99840
>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence Length = 167832 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 29586 tttttcaacataggcctcaat 29606
>gb|AC137719.5| Homo sapiens chromosome 8, clone RP11-260I22, complete sequence Length = 171164 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 6070 tttttcaacataggcctcaat 6050
>gb|AC136433.3| Homo sapiens chromosome 16 clone RP11-21C14, complete sequence Length = 164765 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 151652 tttttcaacataggcctcaat 151672
>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence Length = 221622 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 186494 tttttcaacataggcctcaat 186474
>gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, complete sequence Length = 109999 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 76870 tttttcaacataggcctcaat 76890 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 10625 tttttcaacataggcctcaat 10605
>dbj|AP006724.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-17M1, complete sequence Length = 171460 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 156693 tttttcaacataggcctcaat 156713
>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence Length = 182046 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 29586 tttttcaacataggcctcaat 29606
>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence Length = 184294 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 72688 tttttcaacataggcctcaat 72668
>gb|AC125789.2| Homo sapiens chromosome 5 clone CTD-2262G7, complete sequence Length = 135052 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 125515 tttttcaacataggcctcaat 125535 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 77097 tttttcaacataggcctcaat 77077 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 17256 tttttcaacataggcctcaat 17276
>gb|AC126750.3| Homo sapiens chromosome 5 clone CTD-2055H2, complete sequence Length = 120765 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 74141 tttttcaacataggcctcaat 74161
>gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, complete sequence Length = 145789 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tttttcaacataggcctcaat 604 ||||||||||||||||||||| Sbjct: 92951 tttttcaacataggcctcaat 92931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,906,272 Number of Sequences: 3902068 Number of extensions: 6906272 Number of successful extensions: 127884 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125331 Number of HSP's gapped (non-prelim): 2543 length of query: 736 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 713 effective length of database: 17,143,297,704 effective search space: 12223171262952 effective search space used: 12223171262952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)